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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0514800 |
| Transcript ID | LotjaGi3g1v0514800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9; TAIR: AT4G34700.1 LYR family of Fe/S cluster biogenesis protein; Swiss-Prot: sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9; TrEMBL-Plants: tr|I3S9X5|I3S9X5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0514800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93190618..93194335) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGATGGCCCAGAGACTTGTCCATGTTTCATGAGTCGAGCTATACGACGTCGTTAGAAACAGTGCTGGTCGGAGTTAG CTAGCTTGTGTTGATGTTCTGTCTGTGTTTCATCGTTCCTCAGTCGTGAGAGAGAGAAGAGAGAAAAAGAGAGATGAGCG TGACAGCGTACTTTGCTCGGCGAGCGGCGCAGAAGGAACGGGTTCGGATCTTGTACCGCCGCGCCCTCAAAGACACCCTC AACTGGGCCGTCCACCGCCACCTCTTCTACGACGACGTATCTTCCCTCTTCCTCCTTTCAATTTCACCCTAACCTTCTCT CTCTCATCTTCCATTTCTCTCATCATTCATTCAATCTCTCTTCTCTTTTCAGGCTGCAAACCTTCGCGATCGCTTCGAGC AAAACAAGCATGTGGTTCGTTCCCTAATTGTCATTTCTCTGGTTCCCAATTCACATTGTATCTGATTATCGCAGAGATTT CAGATATATTCTGCATTTCGTGCAAGAATTATTAATTATTAGCTTATTTTCTATTCTGTAATGCTTTGCTTTGCGTGGTT TGGATTTACAGGAAGATCTTGATACTATCGATAGGTTGATCGATGATGCGGAAGCACACTACAACAAGTTTCGTCACCCT GATCCTTACATAGGTAAACCTGTCATTTCACTGTTGGGAGTTGAGGTTTCTGCAATTTTTTAGCATTTGTTTAGTGTGTT TATTTGTTACTGTAGTACAGCTAGTACAGCAATCAAATTGGCAAAATAGGTTTTCAATTCATAGTGAAAAATGTAGTTTC TCTGAGGTGCAAATTTATTGAAGCTTGGTGTTCTATCATCTATGTCATTTTGAATTTTGCAATTTTGGCTGGATTTTGTG ATATTCCATGTAGTGGTCTTTTCTCATTCCTGTTTTGTTATTCGATCCGGTTCTGATGTTAACCCTTTTACTTTTCTGAT GTATGATAGTGCCTTGGGCTCCTGGTGGTTCAAAGTTTTGTCGCAACCCAGCTCCACCTCCTGGGGTAAGTCTAAGTCAT TATGGTTGTAGGGTACATATTAAGTTTATCTTTTCCTTTTTGGTTTGTTTGTATGCCTGTGTGTGATTGTGGAATTTGGA TCCTCTCATTTGACACTTGCATGACCGGTTCATTTGATGAGGTCATGGGAGAGTGAGACAGAACAATGTCATGTGCCAGG CCCAAAATACCTGCACAGGGCACTGCCAATTCTCTCCGTTTTCCTTTTGTAAAGCTATTATTGATTAAATTACTCCCCTT GTAACATGTCATTGTCTTGCTTAAATCAGTAAACTGTGCTGTTTTCTAGTTATAACTTGTAACAATTAAATAAAATTTTG GTGAGTCTGAGAGATATGTAAAAGCATAGGAGAGTAATAATTTCTATGTGAGTAACTTTCTTTCTCATATTCCTCAATGA TTTTCTTCTATTGCGCATGAGATCCTCAAGTTATTAGTATTTGGTAATTGGTTGATGCTATATGTGGATAGTTATTATAT GATGTTTTAGTGCTTTGGAAAATATGCTTATTTCTGACTGCATTTGATATTCTATTCCCGATGCAGATTGAGATAGTTTA TAATTATGGCCGTGAAGATAATGACTAAAATCACCATCTTTTCCTTGCAATAAATAAAGGTTAGTTCTAATTGTTTTAAA TTTACTGGTTTGCGGATTTAGTCACCTTCGTTTGTTCTTATGCAATGAGTCATAGAATATACATTTTACAGATAAGACAT ACTTAGAATGATTGACTACTGAAAATTAATTTTGCATCTCCGATCACTTGTTCCTTTTTATTTTGTTTTCACCAGATCAA TCATAGGAGTTAGGACTTGTAGTTACAAGATTTTAGGTAAGGAAGGTAGGGAGAGAAAGAATAATTTTTGTTATGATATG ACGTATGATACAAAAGGCAAAACACTAACCCTTAGTTATACTGACACTAGACTTCCAAGTTCCAATCTTAATCAAATAGT GAAACTAATTAAATACATTCAATTTCAGATAGGGTTGATTTATTTATCCAGCAAAAAAAATGTCCTACTCTCAAGTGCTG TTGATTGACTGCATGTCCATTTCCATCAATTTCCTTTACCTCGATTTCAAATGTTAGGTTTGATGAATTTGTGAAGAGTG TAGATATTTAGGGCTCGGCTTGGAGTTTGAAATCATTGTTTATTTAGTTCCAAAGTTTAGAAGAAAACACTTTGAAACAG AGCCTGAAAAATTGGTGTTTTCATAAAAAATAAAATAAAACCGGAAGACATAGGTTGGATTGGAGAAACAAGGACAGATC CAGGTAGATGACGTGGAGGCTCTGCTGATGGCTGGAGATATGGTAGGACATGTGGCCATGCACAAAAACAAGGCTTGAGA TGCTTTGGATGGTATTGGTTTTGACTGGAAAGTGGCTGGAAGTGGAAATAATGGCAGCTGACTGGAAAGTGGTCGGAGAA GGATTCTTAACACACCGGAAAGATGAGGTTGGAAACCAAAGATGATACAGTTGAGAGGGAAAGGGAATTTGTGCATGATA GAGGAAAAGTACAGAATCAGGGAGGTAATGACATTATTATGGTAGAGTTCCAAACTTAATGGAACTTGACAGCAGAATAG GATGGTATTGTTTTGACTTCATGTTGAAGTTATAGTGTATAGTTACGTATGGATTGGATAGAAAGAGTTAAGACTTCATT ATTATGATACAAAAGACAAACGCAATAAAGGTGTGTTTGTGTGTTTTTAGGGGAGGGGTGGGCAAGAGAGGGGTTAGGAG GGTAGCCCTTCCCTTGTTTGGGATTCTAAAACCCCTCGATTTGGAACTAAAAAGTATGACTAAGGGTTTCGGTGGGGTGT GGGAGGGTTTTTAGAAATACCTCGTAAGCCTCCCCCTTCTCTTCTCTCCTCTCCTCGCCAAAACTCAACTCACAAACATA CCCTAAGCCATATATATAGTAATATTAGTGCACTCTTTCTCCTACTTGTAGATTGCCTAAATTCTTGGTGAATAACTTCT TCATCAGAATTCAAATTTTGACTGTTTTTTGTTGATACAGATTGAGAAGAACCATGCTTGTGATGTTGAAGAAAACTATT ACATGCTTTGTCTTTAGTGTCACTTGACCGAAACCGGATGGTTCCTGGAACATTGAATGTATTGATATTCTGTTGCTGAT TCTTTTTTGTGTAATGGAGTTTCTATATGGTCATAAAAGTAGCTATATTCTACCGAAGGATTTGTATGAATTACATAAAT CAACTGCAAGTTCTGTGTTTAAGATTTGATTTCCATGCTCTTCCAGATTTTCTAGCAACCTTCCAATGTTGACTATTGAA CTGCATGTTTTTGCACTTGTTAATGAAGACTGGTTTACTAGTCATGATCATTAAATACTTACAGAGAATGTTTTGATTTA GGCTTTAAATTTAATCAAAAAGCATGTATGGCTATTATGTAGCACATTACATAAAAAAATTATCTGATTCTCTAGCGTGA TGCAAGAGTCACTAGGTAAAGAAAAGAGGAATGAGCGAAGGTTGTTGATTGGATTTATTCGATAGATTTAATCATCCAAA AATAATTAAGCAAATTGGTATAGATTAATTTCAACAAAAAAAGAAGATAATCGTTATACTTTACTTCAAAATCTAATTAA TTTAGTTTTTAAATTATCTTCTTCATCTAGAATTATCC
CDS sequence (LotjaGi3g1v0514800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGTGACAGCGTACTTTGCTCGGCGAGCGGCGCAGAAGGAACGGGTTCGGATCTTGTACCGCCGCGCCCTCAAAGA CACCCTCAACTGGGCCGTCCACCGCCACCTCTTCTACGACGACGCTGCAAACCTTCGCGATCGCTTCGAGCAAAACAAGC ATGTGGAAGATCTTGATACTATCGATAGGTTGATCGATGATGCGGAAGCACACTACAACAAGTTTCGTCACCCTGATCCT TACATAGTGCCTTGGGCTCCTGGTGGTTCAAAGTTTTGTCGCAACCCAGCTCCACCTCCTGGGATTGAGATAGTTTATAA TTATGGCCGTGAAGATAATGACTAA
Protein sequence (LotjaGi3g1v0514800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDTIDRLIDDAEAHYNKFRHPDP YIVPWAPGGSKFCRNPAPPPGIEIVYNYGREDND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 108 | 105 | 8.1E-51 | – | |
| PANTHER | 4 | 108 | 105 | 8.1E-51 | ||
| Pfam | 16 | 69 | 54 | 4.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitochondrial electron transport, NADH to ubiquinone | The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I. |
Expression pattern of LotjaGi3g1v0514800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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