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LotjaGi3g1v0520600.2

Overview

Field Value
Gene ID LotjaGi3g1v0520600
Transcript ID LotjaGi3g1v0520600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Phosphatidylinositol N-acetylglucosaminyltransferase subunit P; TAIR: AT2G39445.1 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit; Swiss-Prot: sp|O64792|PIGP_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit P; TrEMBL-Plants: tr|I1M1H5|I1M1H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0520600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:93697602..93698964) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAAGTCCCCACTCTGTCAACAGTCCTAGAAGAACGCTCAGTTTGTCAAGACAGCGGAGGCCATATGCATCCTTTCC TGACCAAGATGACAAAACCTCTGGCTTTGGATTGTCTGGCGACCATGGTCCTAAGCCTTCTGAAGTTTATGGTTTTCTGG GATCCATAACCACTGTTGTTGCTTCAGGTTTTCTCTCCTTCCTGCTTTTCACAATTTCATATTCTCTCGTTTGACAAAAT ATCTCCTGTTTAATTATAAAAGTACTGATTAGTCCCCGTAGGAAGGATAGCTCAAGTGGTAGGAGATGGAGACATATGGA TTGGGTAGGGGAGGTCCAGTGATTGATTCCTGGCGGGTTCAAAAAAAATACTGATTATGATTAGTACAATACAAACTTTT TAAATCCAAATGTCTCAGATTTATTTTGATTTTCATATTGTATTTTATGTTTTTGATTTTCCTATGTCAACAGTTATTTT CTTGGTATGGGCATATGTTCCAGAATCATGGCTACATTCTATTGGCATCACTTACTATCCTAGCAGGTTCGACAGCTCAA CTCCTTTTAGTATTTTAAGCTTGGGCAATATCTTAGCTCTCTACCATATTGAATTGTTTGAGTACCCAAAATAAGAATTT TGCTTTGAAAAAAAACTATGGAGTGTTAATTTAAAGGTTGTAGTTGTACAAATGTCTTCTCAGTTATGGTGCATGGAATG GGCAAACAACTTAGCTGTAAAATCTAAGCAGAGATTTGGGAGAGGAATGGAGGGAGGTCAGCCAACTTTTTCATTCGGAG TGCTTAATAATTATGTAGAAAAGGATTGTAAATTTGAAAAACTCACATCAGTTTTCACTTTCAAGCTTCCAAATTTCAGG CTGGGGAAATCAGCTCAGACTTATGGAAATAACATTGTGAATCCAACTGTTCATGATAAATGATAGAAATAACTTTTGCT TTTCAGATATTGGGCTCTGGCAGTACCAACTTATGTGATGGTGAGCATTGTATTAATGCTGGGATTCTACATTGGTCTTA ACTTCATTTCAACTCCTTCTCCTGCATCTATATACACAGTTTTTGGTGAGTTTGCTACTGAATTCTTTAGTGATACTGGT GTGGTGAATTTCGATTGCTAGATTACTTCATTTGTTTCCTGCACATGTGTTCAGGATATAGTGCAATGTTTGTTAGTTGA AGTTTTTTGATTACTGATATGGACATATATTTGTTCAGATGAATTCAGTAGGGATCCTCTGAGTCTTGATTGCTCGCTAG CGGGAGAGGAGAAGCCTATCGACCCTATATCTGATATTGGTATTGACAGAATCAATGATGTTATGTTCAATAATGCGGCC TAA 

CDS sequence (LotjaGi3g1v0520600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAGTCCCCACTCTGTCAACAGTCCTAGAAGAACGCTCAGTTTGTCAAGACAGCGGAGGCCATATGCATCCTTTCC TGACCAAGATGACAAAACCTCTGGCTTTGGATTGTCTGGCGACCATGGTCCTAAGCCTTCTGAAGTTTATGGTTTTCTGG GATCCATAACCACTGTTGTTGCTTCAGTTATTTTCTTGGTATGGGCATATGTTCCAGAATCATGGCTACATTCTATTGGC ATCACTTACTATCCTAGCAGATATTGGGCTCTGGCAGTACCAACTTATGTGATGGTGAGCATTGTATTAATGCTGGGATT CTACATTGGTCTTAACTTCATTTCAACTCCTTCTCCTGCATCTATATACACAGTTTTTGATGAATTCAGTAGGGATCCTC TGAGTCTTGATTGCTCGCTAGCGGGAGAGGAGAAGCCTATCGACCCTATATCTGATATTGGTATTGACAGAATCAATGAT GTTATGTTCAATAATGCGGCCTAA 

Protein sequence (LotjaGi3g1v0520600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESPHSVNSPRRTLSLSRQRRPYASFPDQDDKTSGFGLSGDHGPKPSEVYGFLGSITTVVASVIFLVWAYVPESWLHSIG ITYYPSRYWALAVPTYVMVSIVLMLGFYIGLNFISTPSPASIYTVFDEFSRDPLSLDCSLAGEEKPIDPISDIGIDRIND VMFNNAA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 165 165 1.2E-86
MobiDBLite 1 22 22 -
PANTHER 1 165 165 1.2E-86
MobiDBLite 1 42 42 -
Phobius 1 48 48 -
Pfam 47 163 117 1.3E-32
TMHMM 49 71 23 -
Phobius 49 71 23 -
Phobius 72 90 19 -
Phobius 91 111 21 -
TMHMM 92 114 23 -
Phobius 112 167 56 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0520600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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