Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0523200
Transcript ID	LotjaGi3g1v0523200.1
Related isoforms 1	LotjaGi3g1v0523200.2
Lotus japonicus genome version	Gifu v1.2
Description	Mediator of RNA polymerase II transcription subunit 32; TAIR: AT1G11760.1 mediator of RNA polymerase II transcription subunit-like protein; Swiss-Prot: sp\|Q84VW5\|MED32_ARATH Mediator of RNA polymerase II transcription subunit 32; TrEMBL-Plants: tr\|I1JVU8\|I1JVU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0523200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:94034964..94039525) extracted from Lotus japonicus Gifu genome v1.2.

TCGAGTTGTCTTGCTGCATAATAATAACTTCAATGAATTTTTTTGGCCTATAACACAACATAATATCTATAAAATGGATC ATATTGTTGAAGGGCATGTTTTGTTGAAAAGCTTCAGCCAGGGGCGGACCCACAGCCAGCCCAGGGGTTTAGTTGAACCC CCTGAAAATAAAAAAATTCTACTTACCCCCCTATTATATGTTTTTTTGAACCCCCTGAAAATTTAGATTTGCACCCAGAC CCCAACTCCTCTCTCTCTCACACAGTCAGATCTGTCACGCCCTTCTCTCTCTTTTCTGATTTCTCTCACACGATACACCA CAATCGCTCCCACCAGACCTCATCAACGCGCACCACCACGCCGGCCGCCGCTCCACCACCGATCAGTCCAGCCGTCCCTC TCTCTGGCTCTGCGGTTCTATAGACTACAGGTATTACTGATTTCCTTTCTCTTTCTCTTCTCCTAACCCTAAATGGCAAA ATTGATTTCCTTTCTCAAGCTTGATTTCCCTAAATTGATTTCCTCAAATCATTCAAATTATGCAAACTCTCAGCTTGGTT TTGTCTCAAACTCTCTCTCTCTGATGTGCTGTCAATTAGATGATTGCAGGGTGGGAATATATGTGTTAGTGATGGGTTGC TAGAAAATGCTCTCTGCATTCTTGTTTTGGTTTCTCTATTTTAGTGGGGCTGTCATGAGTTGAGGGGGATGAAAATCTGA TTGAGTTAGTTTAGCTTTAGTTTTTTTTTTTAGAGCAAAATGCATCAGTTCAGCCTATAGCCATAACCAAAGGTCCAGGA CCAGCTTTTACATGTTTCATGTGAATTGATAAGTGTGATACAAGTTGAATGCAATAGAAGACCATTCTTATTCATTAAAT TCCATCATATGTACGCAGATCAGTTTTCTCACTGAGTTGGGTGGTTAGATTCTTTTCTCCCAATTACCCCCTGAACTAGT AGTTCTTTGTTTATTTCGCTCTATAGAAAATGAATAAAATATACAATCACTTAGCTTTAGTTAGTTGAAGTGATTATTGG TTTTTTTATTAGAGTGAACTTTAGTTAGTTGAAGTCATTATCTCGTGGCTGCCTTCTTGATCTACATGAATAAAAGAACA TGAAAATATAGGGAAAAAAGAAGTAAAGAATTATAAGTTTATAACAAAAGCAGTGGAGGCTCTAAGAACCCAATTGTCAA ATTTCAGTCCCACATAAGGCATAAGAGACTCATGGGTACAAAGGAGGAAGTGGTAATGTTTACAATGAGCTCAGCTTACA CAGTTTTACAAGGAGAGGTCAAATGTGCTATCGCTGGCTTGGAAAATTCTATTAGATAGAGTTCAGTAGATTGGTGCGTG TTTTCCTTCTGTTTTTGGCCTTTGGTCCCTTGCTGGATGGTTTAAAAGGAGGGACATGGTGGGAGGTCTCCTTCACTGGT TGCCCGTGATTATATGCCCTGGCTAATGGGTTAGAATCTGAATTGTTTTGTTCTGTTTTTCTAAAGGCCTATAGTCTGTT AATGTAGGGCCTTAGATTATATTCCCTTTTCATTTTACATTCTTACCAAGGGTTGGAATACCCATTGTACTCTACTTTCT ATTATTAATAACACTTTGGTTTATCAAAAAAAATTGCTGTTGAAATATTGCATTTGGTTAATGACTTGAAATACCACATT ATAGTACTATGAAAACTTGACAGTTTATGCACTAACTTGAAATTCTAAATATGTGCTACATTTGAGTGAAATGTGTGTTG ATGTGATTAAAGTTGTTTTCAATTATATTTTTATCGATGCGTTCATTTGAAAAATTTGAACCCCCTGACCCCGGGGTCCT GGATCCGCCACTGGCTTCAGCCTTGCTCTGTTGCACATACTCGTCTCTGTCGAGTATCATTTCTCAATCAAAATTATTTT TCTCTATATTTATCCTGATCAAGTGAATAGTCAAAGAGAATTGTAATTAAAGATTATTTCTCTTGCAAAGTGGTGATAAG GCCATATAGCACATTTAGGCTATCTTGTGAGGCTTAGTGATCCCAAGTCCCAACTCTCACTCACATCTTTGGTCAAGAGG CTTTATAGTTTGAGCCTAGAAATTATATAAATTAGACAAATTAGGGATCATTTGCAAGATGGAAAGATGACAAGATGGAA ATTTCCTAGGCATTATAAGGAATAGTTACTCACCCCTAAGACCCTGATCATACTTCCAGTAGTGGTAATGTGTGATTCAT AGAGGGGTGAAACTTTAGACTGAGAATGCAGCTAATATTATCTGTCTTCCGCATCCTTCTTATAATTACAATCTGTTTAG ATTCTGTACATAATCCAATTGTTAATCTTCTTTATCTTTTATGTTTCTTTTCAAAAATAGAATGTCATATTTCATTGTTA AGTTCTGATGTTTTAAAATGAAACTTTTGCTACTACTGGATTCTGGTGTAGCATTTAAGACAAGTTATCCGGGCATGCTA TTGGAATATGAGACTATTGCATTTAACTGCTGTGAGAGAAACTTGATTTTTTTTTAAAATCCTTAATTCCTTTTTCTAAC CTTACTTATATTTGGATCAGTTTATTGTGACTAAGCATGCAGTCATTGGATTTCTCATAGATCTTTTTTTACCAATGATG GGGATCTGTCATGAACATTTGATTTATCAACCTGCCGACTTAGCAATTTTACTCCCCTATATACTGATACCTCAAAACTA TTTTGACATACCAATATTTTCTAACTTTTGATTCATGTGTGACAATCCTAAAAATATACAAGAAAGTGTGTCGTTCACTG TGTCTTCCTCTGCTGCATCTGCTTTTGGGTCCTGTGGAAGTTTCAACAATAAGCTATGTTGTATCTTGTCAAGATTGTTA TCTAGCAAACTTACATAACTTTTCCTTCCCCAAACTTCTGCTGTTGAGAGTCCTCACAAAAATTTCTTCGGTGAACTTCA GATGATTTTGCTAACCGATAATTATGGCTACATTTGTAGGTTTGTTTTCACCTATTGCCTTCTCAAAGTTTCAAAGAAAA GGGTTAACTTTTCATTTGGATTCAAAATTCCGAAGAATATTGGGATTGTCATGCTCTGTATTATATCCATCTTTGTTTAA CTCTCACTGTTTAACATGGCAAATTGCATATTTTGGATTATTTATTTTTTATATCTTATTTGGGTTTGTTCTATTGAAGT TGGCATTACAAAACCTTCATATTTAATCTAGGATTAAATGTTCTGCTTGTAATCTGGTCTTTGTTGGGTGAGAGTTTTCA GTGTTTTTTATCTTTAATAGTTAATTCCACAGGTCTTAATTCCTCCCAACATATGTAATTACAAGAACCTTAATCTTTCT TTTTCCTTTTTAACGTAAACAGGCACAATGGACAGCGTAGTTGATTCTCTAAATAATGCCTATCAAGATTTTGTTGCTGC AGCCGCAACCGTATTAGAAGCCAAAGAAAATGCCAGTGCCCTTAAAACAACAGCAACAGATACTGCTCTTGAAAACTTCA AACAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCA GAGTGTCTGGTTGATGAGGCGACAGGGTATGTGGGCGGAAAACCAGGACAAGCTACCACTGGTCTTCCACCCATCAGTGC AGTTCGCTTGGAACAAATGAGTAAAGCTGTTCGGTGGCTTGTGATTGAATTGCAGCATGGATCTGGATCTGGTTCTGCTA ATTCAGCTCTTTCCCATCCCTCAGCTCCTTTTGATGCCAGGTTCTCCGAAGATGCTGCTCAATAGCATTACTATTAAAGT AACTGTTATGATTAACGTTCTCTGGGTCAAATTTGAGTGAACCCTCAAATTCATCCCTGAAAGACACAACATTGGATAAG CTCGTCCCAGAAATAAGGAAATACCTTTAAAACTCCCTGACGTGTTATTGTCCCTCAAGTTGGTCCCTTTGTCACTTCAC AAGCCTCTGTGTGTTAGTTGACCAAAAGTGATGGAGAGATCAACTTGATTGATAACTGACACATATGAGGACTTCTAACA TATTTCAATCTTTTAGGGACAAACATGTTTGAGGTGTATCTTTCAGGGACGAATTTGAGCATTCACTATTTTTATATTTA TCTATGGTAATTGTTCCTAGGCTTAGACATATTTATGCATGTTTAAATACCAACTTCAGGTTTGCTTATCAAAATAAAAA AACCAACTTCATGTTTATGGATGTAACTTAGGGTGCATTCTGCACGAAACAATATTCTGGAGTAGACATTTGAATGTGCA TCTCTTCCAAATCGTTGGACACGAAGATTAAAATGAAAATAAAAAAGTACACTGAAACTTTAAAATGTAAAAAATGTTTG ATCGACTCCTTTTTACATATTTGAGCTGAAAACTTGCTTTTTAGCTTACAAATTTAAAAACATGTTTTAGTTTTCTCAAC TTTTTTAAATTTAATATTCAAACCATCTCTATCACTAGCGTGGAGACTAGAATAAGCTTGCAAAGAAAATGGTTTACACA TG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0523200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAGCGTAGTTGATTCTCTAAATAATGCCTATCAAGATTTTGTTGCTGCAGCCGCAACCGTATTAGAAGCCAAAGA AAATGCCAGTGCCCTTAAAACAACAGCAACAGATACTGCTCTTGAAAACTTCAAACAGAAGTGGGAATTGTTTAGAGTAG CATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGTCTGGTTGATGAGGCGACAGGG TATGTGGGCGGAAAACCAGGACAAGCTACCACTGGTCTTCCACCCATCAGTGCAGTTCGCTTGGAACAAATGAGTAAAGC TGTTCGGTGGCTTGTGATTGAATTGCAGCATGGATCTGGATCTGGTTCTGCTAATTCAGCTCTTTCCCATCCCTCAGCTC CTTTTGATGCCAGGTTCTCCGAAGATGCTGCTCAATAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0523200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSVVDSLNNAYQDFVAAAATVLEAKENASALKTTATDTALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG YVGGKPGQATTGLPPISAVRLEQMSKAVRWLVIELQHGSGSGSANSALSHPSAPFDARFSEDAAQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR35989:SF1 View details on PTHR35989:SF1 Search for proteins/transripts with this domain View external data on PTHR35989:SF1	1	145	145	2.9E-76	–
PANTHER	PTHR35989 View details on PTHR35989 Search for proteins/transripts with this domain View external data on PTHR35989	1	145	145	2.9E-76	IPR033244 Show description in modal box View details on IPR033244 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	121	145	25	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0009631 View details of GO:0009631 AmiGO InterPro QuickGO	Biological process	Cold acclimation	Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.	Subterm of View details of GO:0009409
GO:0010150 View details of GO:0010150 AmiGO InterPro QuickGO	Biological process	Leaf senescence	The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.	Subterm of View details of GO:0090693 Part of View details of GO:0048366
GO:0016592 View details of GO:0016592 AmiGO InterPro QuickGO	Cellular component	Mediator complex	A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.	Subterm of View details of GO:0032991 View details of GO:0044451
GO:0048364 View details of GO:0048364 AmiGO InterPro QuickGO	Biological process	Root development	The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.	Subterm of View details of GO:0099402 Part of View details of GO:0022622

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0523200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0523200.1