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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0523300 |
| Transcript ID | LotjaGi3g1v0523300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ; TAIR: AT2G17880.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic; TrEMBL-Plants: tr|A0A151TMU6|A0A151TMU6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0523300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94041038..94042044) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATCACAGTTGTCAATTCACCGCATATTACATTTACACCTTGGACACACTCTCTTGTACTTCCTCTGTTCTATATAT ACACTCTTCCTCCTCAACCCTTATCCACCACCTTCCTTCAATCTCCCAAACTCAAGAGTTCATTCCATATGATTTTATCT CCTTTATCCAACCCTCAATCTTAGCCTTCTCAAGAAAAACCGTTGCCACAGCTCAAAACAGAGTACCCTGTTCTCGTGCA AAAAAGATGGGTTCCCTCTATGAGGTGCTGGGAATTTCAACTGGTGCAAGCTGCCTTGAGATAAAGACAGCTTACAGGAA GCTTGCGAGGACGTGCCACCCTGATGTTGTGGCCATAAATCAGAAGGAAAGCTCAGCGAACCAGTTCATGATGATCCACT TAGCTTACTCAACATTGTCTGACCCAAATAAGCGTGCTCAATATGATATAGAAATCTATGGACACAGAAGGCCAACAAGT GTAATTTCTATGTCAGCAAGAAATAAGACATCTTCACGTGCAGGAAGGAGATGGGAAACAGACCAATGCTGGTAGCTTAG CTATGTACCATGTTAGCCTTTATTTTCCTCTGTTCTACTATGAGAAATATTACGTCTATGCTCTTCCTTAAGATATTCTT TATCACAGTCTTTACTTTCGGAGAAATGGCTAATAACGAAAACAGTACCAAAAGAATAAGATAAGTACATAAAAGAACAC TTTCATAAGTATACCCAAAACAACCTATATGCACCACGTTGTTTTTCTATCTCTTTTACAATTACATCTCATCAAATACT TCACGTTTTTCTCTTCCTTTCTCACTGTGATGTCTTAACCCATTGAGTGTCTACCCAACATTTTGTTAAGGAATTGTTAA GAGCCAGATAAATTAAACATGTATCACTTGCACGTCATTAAATGATAGCTCAAGTGATAAGAGTCAAGGGTTAAGAGTTC AAACCCGGAGAAAGACTAATTTACTATCATTACTAACAACTAAATTT
CDS sequence (LotjaGi3g1v0523300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCCCTCTATGAGGTGCTGGGAATTTCAACTGGTGCAAGCTGCCTTGAGATAAAGACAGCTTACAGGAAGCTTGC GAGGACGTGCCACCCTGATGTTGTGGCCATAAATCAGAAGGAAAGCTCAGCGAACCAGTTCATGATGATCCACTTAGCTT ACTCAACATTGTCTGACCCAAATAAGCGTGCTCAATATGATATAGAAATCTATGGACACAGAAGGCCAACAAGTGTAATT TCTATGTCAGCAAGAAATAAGACATCTTCACGTGCAGGAAGGAGATGGGAAACAGACCAATGCTGGTAG
Protein sequence (LotjaGi3g1v0523300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLYEVLGISTGASCLEIKTAYRKLARTCHPDVVAINQKESSANQFMMIHLAYSTLSDPNKRAQYDIEIYGHRRPTSVI SMSARNKTSSRAGRRWETDQCW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 98 | 97 | 2.8E-21 | ||
| SMART | 2 | 62 | 61 | 1.1E-15 | ||
| PANTHER | 3 | 102 | 100 | 1.3E-47 | – | |
| ProSiteProfiles | 3 | 70 | 68 | 16.447 | ||
| PANTHER | 3 | 102 | 100 | 1.3E-47 | – | |
| SUPERFAMILY | 3 | 70 | 68 | 6.02E-21 | ||
| Pfam | 4 | 67 | 64 | 1.5E-20 | ||
| PRINTS | 5 | 23 | 19 | 1.3E-12 | ||
| CDD | 5 | 59 | 55 | 3.84306E-16 | ||
| PRINTS | 23 | 38 | 16 | 1.3E-12 | ||
| PRINTS | 42 | 62 | 21 | 1.3E-12 | ||
| ProSitePatterns | 47 | 66 | 20 | - | ||
| MobiDBLite | 82 | 102 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0523300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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