Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0525300 |
| Transcript ID | LotjaGi3g1v0525300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT3G19850.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LT24|Y3985_ARATH BTB/POZ domain-containing protein At3g19850; TrEMBL-Plants: tr|A0A151TMU0|A0A151TMU0_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi3g1v0525300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94210385..94216677) extracted from Lotus japonicus Gifu genome v1.2.
CTATGCCTCCACCGCTCCACGTTTACAATAATACCAAAAATTGCCACAGATTGGAACATATATACATGGGATCTGTCATA AGATAGCCAAAAACTTAAAAATTAAAGTACAATAATTATCACTGTAGACTCACGGCAGAGAACAGATTCCATAACAAACA AAATAAATAAGAGAGATCTACACCTAAATATAAATAAAATCAGTGAGATCAGAAACCATTCAAATCAAATAGAGGGGTCT GATGTTTCCCTATTGCCACATAAAAACAATAGAGCTTACCATATCAACATATAATCTCTCTGCATATAAAAGCACAATTT TATCTGTTTTTGTTCAATGCAGAAATAGCTATGGTGAAGCCTTGTGACTTGCAAATCAACATTAATGGTCAGCAGATATT CCATTTGAAAGAGGTATTCAAATTATTTTCATTGAATATTTGTTGAATGATGTAGTTAGATATTTCAAAGAAAAGTTTCA AACATCAGATATGTGAGGTGACTCTAGTTCATTTGTTTTGCAGAAGATTATTTCAAAATACTGTGGAAAGGTGAAGAAGA TCATGAATCATCAAAAGAGAAGGTTTCAAGTGAAGGACTTGAGGATCAAAATCAATGATTTCCCTGGAGGCCCAGATGGG TTTGAGCTAGTTTCAAGGTTTTGTTACAACGATGGGAAAATACCAATCACTGCAGCTAATGTGCCTCACCTCCATTGCAG TGCTGTTTATCTTGGAATGACTGAGAAGGTTTTCAGCAACAATCTCTTGCAGCAAACAGAAGCTTTTCTTGAAGAAATCT ATCACTGGAAATGGAATGATGTACTTGTAAGCCTCATTAGTTGCCAGTGGTTTTACACATATGCAGATGACTATGGTCTC CTGGAGAAGATCATTTCTGCAGTCTTAGCAAAGATTTCCCAAAATTCAGACTCCAACCTTCTCCGCTACTCCTCTTCATC ATCATCACTGTCATTAACATCTTCGCCGGAAAGCAATTCTGCCAAGAGGTTCTCTTCTTCATCCCAAACTACCCCAGTTA AAAACAAGTCAGGTTTGCATAGCAAAGCATGGTGGTTTGATGATTTGGCAACTTTACCCCCAAATATAATTGAGAAGCTC TTTCAGACGGCTGGAGCATACAAAGATGATAACAACAATTTAATCCTCACAAGATTTCTGTTGCTTTATCTGAAAACAGC TACTCAAACCAGAGTGGTTAATTGTAGAAACAGAAGTGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGTGTAATAT CTGTTGGTAGGAAGAAGTTCTCTTGCAGAGGTCTTTTTTGGGTATTGAGGATTTTATCTGGGTTTGGGATGAGTAGTGGT TGCAGAACTGAATTGGAGAAATTGATTGGTGGAATGCTTGAGCAGGCTACACTGGATGATCTTCTGGTGTCAGGGCATGA TATGGGAGTTCATTATGATGTTGATTTGGTGATAAGGTTGGCTAGACTATTTGCTGATAGCAATGGCTCTGATGGATTGT ATTTACAGAAGATGAAAAGGGTTGGTAGATTACTTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATC TCTCAATTTCTTGGAGTTGCAGAGTGCTTGCCAGACCCTGCAAGGGATTACTTTGATGGTGTCTACAAAGCCATTGACAT CTATCTTGAGGTGAGTGAATATAAAATGCCCTTTTCTATTGCTTTTCTTATACAAGAAAGTGAAGTGTGAATGTATTGTT GTAACAAAATTCTTGTCTTTCATCCCACCAGATTTTGGAACTGGGATAATATTATGCAAATTTCTCATTTTTGAAACCAA TAATGTTTTGCAGTCTCATCCAACTATGACATTTGAGGAAAGATCGAGATTGTGTGGATGCCTTAATTGCAGTAAACTCA GCTTTGAAGCTAGTAAAGATTTGGCCAAGAACCCCAGAATACCTCCAAGAATAGCAATGGAGGCTCTTATTTCTCAAGGA TCAAAAATTCCAACAAGCGACTTTGTAACTGAGAGTCCAAGGATGAAGAAGCCTTCCAAAATATTTTTGTACAATGAAGC CAACAGAGATAGCTTCTCCCGAGAAAATAAAGATAGAGCAAACCTTCAGAGAATGCAATGGAAAGTAGCAGAACTGGAGA GCTTAGACAAAGAAATGAATGGTCAGATTTCAAAGTTGTTTAGCCATAATCTCTTCCGTAGTCCTGCACGTGCTAGAGCC TCGCCAAGATTGTGTTGAATATATTCCTCCAGTTACCTGTTTATTACTATCCATCATAAACTGGTATTTCTAGAATTGTA AAAAGCTGTAGTTTTACTTCTATTATATATTTGGTTCAGAATTTCAACGTGATAGAAGAAATGAAATATATTTGGTTCTT CATTATTGCAGTTACACAAATACACAACAAATATTATTGGATACAAGAAATAATCACCCCTCCTATTCGGTATACTATCA TCTAATGAGAACAAAACAACACTTCTATTCCGTCAGTTTCATAAAATTTAAAAAAAGAAGTGAAAATGCATATAAGTTTG TACTAAAAGTCTAAAACCCCAAAGTTACTTCCTTTCCCTCCAAAAGAACATACATAAGAAAGTGGTGGGGCTCACAAATT CTATCACTATCACCCCTAATCATTTACTTCTTTTAGCTAACATGCTGCCAAACATGGGATGAACTTCATCCTTCCAAGTC CCAACCTTTTCTGTGCATCCTAAAAAGACATACCAAACAAAGTTAAAAGAATTGGTCCGTAACAGATAAGCAAAAATGCA ATGACCACTTTAAAAGGAAAGGTAGTTCTATTTTAGGATGACAAGATAATAATTGAGGGACAGACATTTTTCTTATACTA AGAATGTAATATTTGTACAGGATCTACTTATGATAAGAAGCATCAGAATTTAAACCTGTCTATGGGTCTCAATGATTTTG TTTACTCATGAAAGTAAAATCACGAATAGAAAAGGATTTGGTAGGCATATAGAATTTAGAAACCATGATTGCTATGCTAG ATGTTTTCCTAAATCAGGTTGGCAATATTAGGTCCTTGTCCTTCTTTTGATGATGCCAAATCTAAAATGGGTTCATGTGA TCTAGGAGTACAAATCCTCTCACCCGTCAATATCTCATGGAAGCTCACGAATCTTCCAGTGGAGTTTCTTTCACATGATT GTACCTTGTCCAATAATTACACTTCGGGTGCTCCCGATTGAATATCCTCAGTCAGTGCTGTTGTCCTGCTGTATAGGATT AAAAGAACGGTCAATCTTACCGTAACAGCAAAGTTAAATATAACATTGTTCATTTTCTGTTGTAGCATACACGAGCTAGT TTTTTTTTTTAAATGTACAAAGAGCTAGTTAATGTCAGATGAAAATGGATCTTGACAATGACTTTGATACTTTTTTTTGC TGAAGAGCTTTAATTGAATCTGTATCACATCAACTAGCAACACAAACAATAAATCAGAATGCAAATGAGAGACTGCTATT TTAAGTAATAATGATGAGCACATATGTAGAAAGTTCAGAAATGAAGAATTTCGTTACCCTCAATTGAAAGAGGCAGTAAT GGATCACAAATGGACATTCCTCTGCAAATATGCTTTATGAATCGACAAAAACACCGGCCTACAAGTTCAATAAAAAAACA ACCAACAGAGTCCAATAGAATTCCCAAGTTTGATTACCTTAAAATTATGTAAAAACCATGATCTGAACATAATGTTCTTA CATCTTTCACTACAATCTTGTCCGGAAAACTCAATCTTGGCAATAACCACTCCAACAAATAGAATGAGGAGTTTTGACAA CTGCCTGTAATAGAATGATCATCTGAAAAGCAAAGAATATGCTGGAATCATGGTTGATGGAAAAAGCAATTGTCAATGGT AATTAGTAGCAATGGGACCAAACCTGAAGAACGTACAAGTATTCTGTGTGTAACAAAGGACTGTGACAGTTGAAGGGACA AACAGCAAATTAGAAATCTTAATACTGAAGAAAAAAGGCATGTAGATTGGAAACTACGAAACTAAAACGACATTAGGAAT GGGATTTTGCCTCCTTATATCTACCCGGGAGAACATAAGAACACCCACCTTTAAGCCATGCTCAGTATCTCATTTCCGAA AGAGAGATTCAACCTTAATTATTTAGAAAAGGCACTTTCTGTAAACAACTGCTTTACATCTCCAAAAAATTACAGTTAAC TAACTTGAGAAGGTTACTTGAGGCTCCACTTGAAAGATAAAAACTGAACAAAAGAACTCCCATGTTTTAATGATTGTCAT ATTGCCACACAATAAAATTTAATAATAAACAGAAAACAGTGAGATTGTTGACCATCCAAAATCCTATAAGAATTATCTAA AACCTTATCTATAATACAAATAAAGATATCCCTGCATAGTTTTCTATCATAAAATGTTCCCTAAGGATGTTCGTATCATT AATAAGTTCATTTTACATGGCATGTTTCTCAGTGAATTAATAAAAGACATCAGGTTATTTTTACAATCATCAAAAAATTA TTTCAGATAATTACACTCACTTTCTCATATTTTCTTATCTCTCTCCCTCTACTTCTATATTATTGTCTGATGCTCTTCCA CTTTTGATAAATATTTTTAATAATATTTCAGATGTAACACCATTTTTTGGACCACCTAAACTTAAGATTTTACAAGAACC TTTGCACATGCTAGCAGCCTAACACACATGCATGTATGTATGCATGCATGTGATATAACAATAACAAAACCTTTACCTGC CAGACAGAAGGCATGTACTCACGATACTCAAAGTGTTGATGGTTTCTCGTTACACCTCTTGAACTTCTTTCTTCCCAATT ATTTTTCATAAAATTCCTGTATTAGGTTATCATCATACATAAAATCATGAAGTAGTACAACAGTATTGAGATTAGAACAC AGAGTACTGCCTTACGATTTATGAGTGACTGGTGGATGGTTTGCAAAATGACAACAAAATTAATTAGATGTTGAAAACAT AACGGGCATGATAAATCACTAATAAACTATAAAGTCAATTGGGTTTCACTTAGTTGTCTAAATTTTAGATAGAGAACATA CAAGCACAGAGGTGCTACCGCGGTAGAAGGAGACAGATTTACATAGAGAAAAGAAGACACTGTAAAAAGGAAGGAAGCTT AGTAGCTTACATTACCACTATGCCTATACCTGCAGTTTATACTGAAGGAAAGAGTAAATAATAGTGTAATTGTCAATGGA TTACTCCTAGATCTTCCTCCTAATATACAGCACTCAATCAACTAGAATGAACCCTCCCATTAATCACCCTTGAAGTTGGT CAAATCTTCTTTATCTCACAACTCTCCTAAATAGTTTGTCATATTCTTTCCACGAAGGTTTTATCAAATTTAACATGTAC CAAATAAAAAATAATAATCCTTCTATAAAAGATTTCAGGTTGGAATCAAGAACCTTTTCAATACTCTATCATCTAAAAAT AGATTCCCATAACCATCATAGAACTCACCCTTTGACCTCGATTGCAGCTTTAGAATATCTATTCCCAAAAATCACCGACT TTGTAGCTATAACGAGCATGGGATGCACCTGAAGAAGCTTTTTAATATCCTGAACTACAGCTTCTGACACACTTTGAAGA AAAAGTTTTTTCCTGTATTACATACAACATCTGCAAGTTAAAAGCAACATATATCTAGAACAATGATACAGATAGGTGCT ATTATTAAGAGAACCTCCGTTTAGTGTTATCTTTTCTCTCACTTTCAATCTAAGTTTTCATTCTTTCTTGAAAAAACAAA GAGATCCAAATTGATATTTGAGAATTCTTAATATAAATTGATCCTAAGGGAACTCTAACTGCAAAAGAGACAAATTCCAT CCACTAGAAAACACAAGTAATACTTACCTGTTATTTTCTTTTAGAGATAAGAATATAGATGCACGATCCATCCAATGAAA AGCCCCAATGCTGTAAATAGTCAAACACAGTTTGATCATTTAAAGTTTACCTATTAGTTATTACATCAGATCAGGTCTTC ATATAATAAATTTGGAGTCAAATCAATACCATCATAATCAACAAAGCAGTGGCAATTAAAGTATCAATTGGATATAGAAA GATCGTAGGCTTGAAAATAACTAAGTTGTTATATAGATATGTGGTTCTTTCGCAAAAAAAAACAATACCAGGTTCATCAA ATAATGAAGTTGATCACTCTTAACTACCCAAGTCTGCTAACTTTACCCAACCA
CDS sequence (LotjaGi3g1v0525300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGCCTTGTGACTTGCAAATCAACATTAATGGTCAGCAGATATTCCATTTGAAAGAGAAGATTATTTCAAAATA CTGTGGAAAGGTGAAGAAGATCATGAATCATCAAAAGAGAAGGTTTCAAGTGAAGGACTTGAGGATCAAAATCAATGATT TCCCTGGAGGCCCAGATGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAACGATGGGAAAATACCAATCACTGCAGCTAAT GTGCCTCACCTCCATTGCAGTGCTGTTTATCTTGGAATGACTGAGAAGGTTTTCAGCAACAATCTCTTGCAGCAAACAGA AGCTTTTCTTGAAGAAATCTATCACTGGAAATGGAATGATGTACTTGTAAGCCTCATTAGTTGCCAGTGGTTTTACACAT ATGCAGATGACTATGGTCTCCTGGAGAAGATCATTTCTGCAGTCTTAGCAAAGATTTCCCAAAATTCAGACTCCAACCTT CTCCGCTACTCCTCTTCATCATCATCACTGTCATTAACATCTTCGCCGGAAAGCAATTCTGCCAAGAGGTTCTCTTCTTC ATCCCAAACTACCCCAGTTAAAAACAAGTCAGGTTTGCATAGCAAAGCATGGTGGTTTGATGATTTGGCAACTTTACCCC CAAATATAATTGAGAAGCTCTTTCAGACGGCTGGAGCATACAAAGATGATAACAACAATTTAATCCTCACAAGATTTCTG TTGCTTTATCTGAAAACAGCTACTCAAACCAGAGTGGTTAATTGTAGAAACAGAAGTGAGTATGCTGCTCTTGCAGAAAC AGCTGCTTATGGTGTAATATCTGTTGGTAGGAAGAAGTTCTCTTGCAGAGGTCTTTTTTGGGTATTGAGGATTTTATCTG GGTTTGGGATGAGTAGTGGTTGCAGAACTGAATTGGAGAAATTGATTGGTGGAATGCTTGAGCAGGCTACACTGGATGAT CTTCTGGTGTCAGGGCATGATATGGGAGTTCATTATGATGTTGATTTGGTGATAAGGTTGGCTAGACTATTTGCTGATAG CAATGGCTCTGATGGATTGTATTTACAGAAGATGAAAAGGGTTGGTAGATTACTTGACAAGTATTTGAGAGAGATATCCC CTGACCAGAACCTCAAGATCTCTCAATTTCTTGGAGTTGCAGAGTGCTTGCCAGACCCTGCAAGGGATTACTTTGATGGT GTCTACAAAGCCATTGACATCTATCTTGAGTCTCATCCAACTATGACATTTGAGGAAAGATCGAGATTGTGTGGATGCCT TAATTGCAGTAAACTCAGCTTTGAAGCTAGTAAAGATTTGGCCAAGAACCCCAGAATACCTCCAAGAATAGCAATGGAGG CTCTTATTTCTCAAGGATCAAAAATTCCAACAAGCGACTTTGTAACTGAGAGTCCAAGGATGAAGAAGCCTTCCAAAATA TTTTTGTACAATGAAGCCAACAGAGATAGCTTCTCCCGAGAAAATAAAGATAGAGCAAACCTTCAGAGAATGCAATGGAA AGTAGCAGAACTGGAGAGCTTAGACAAAGAAATGAATGGTCAGATTTCAAAGTTGTTTAGCCATAATCTCTTCCGTAGTC CTGCACGTGCTAGAGCCTCGCCAAGATTGTGTTGA
Protein sequence (LotjaGi3g1v0525300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKPCDLQININGQQIFHLKEKIISKYCGKVKKIMNHQKRRFQVKDLRIKINDFPGGPDGFELVSRFCYNDGKIPITAAN VPHLHCSAVYLGMTEKVFSNNLLQQTEAFLEEIYHWKWNDVLVSLISCQWFYTYADDYGLLEKIISAVLAKISQNSDSNL LRYSSSSSSLSLTSSPESNSAKRFSSSSQTTPVKNKSGLHSKAWWFDDLATLPPNIIEKLFQTAGAYKDDNNNLILTRFL LLYLKTATQTRVVNCRNRSEYAALAETAAYGVISVGRKKFSCRGLFWVLRILSGFGMSSGCRTELEKLIGGMLEQATLDD LLVSGHDMGVHYDVDLVIRLARLFADSNGSDGLYLQKMKRVGRLLDKYLREISPDQNLKISQFLGVAECLPDPARDYFDG VYKAIDIYLESHPTMTFEERSRLCGCLNCSKLSFEASKDLAKNPRIPPRIAMEALISQGSKIPTSDFVTESPRMKKPSKI FLYNEANRDSFSRENKDRANLQRMQWKVAELESLDKEMNGQISKLFSHNLFRSPARARASPRLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 523 | 521 | 2.7E-225 | – | |
| PANTHER | 3 | 523 | 521 | 2.7E-225 | ||
| CDD | 4 | 103 | 100 | 1.88827E-17 | – | |
| SUPERFAMILY | 4 | 95 | 92 | 6.98E-6 | ||
| MobiDBLite | 168 | 196 | 29 | - | – | |
| ProSiteProfiles | 203 | 461 | 259 | 58.777 | ||
| Pfam | 204 | 437 | 234 | 1.3E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0525300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…