Transcript — View — Lotus Base

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LotjaGi3g1v0528700.3

Overview

Field	Value
Gene ID	LotjaGi3g1v0528700
Transcript ID	LotjaGi3g1v0528700.3
Related isoforms 2	LotjaGi3g1v0528700.1 LotjaGi3g1v0528700.2
Lotus japonicus genome version	Gifu v1.2
Description	Peter Pan-like protein; TAIR: AT5G61770.1 PETER PAN-like protein; Swiss-Prot: sp\|Q9ASU7\|PPAN_ARATH Peter Pan-like protein; TrEMBL-Plants: tr\|I1LPJ3\|I1LPJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0528700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:94546199..94549377) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTAAGCTCAGCTTCTCTCTCTTGTTCTCTGTCTTATCATCCTCTCTTTGCACAAATATCGATTTATTGTATTGCTAT GTTGAATATGGAACTGGGTATTGGTTTTTATTCAATTTCGTTTCAAACCCAACTGAAAAGTTCCAAACTTGGGTTCGTTT ATGTTGGTTGTATTTTGACACTGCACTTGTGAATGAACCAGAGGAAGCAGAAGAGTGGGGGGTTTAGGAGGCCTGTTGTC ATCAAGAACCATAAGCAACCACAGCAGCAGCCAACTGTGGATCCTATCACAGGGAAGAAGATCCCTAAGAGTTTTGTGTT TTCACGAGGGAAGTTGCCTGCTCCTCTCAAGCAGCTTCAGATGGACCTCAGAAAGTTGATGCTGCCATATACTGCTCTTA ACCTCAAGGTGAATTTTCATTTATTTTTCATGTTCCTTATTCATATTCGGACGTGCTATGCTAGGTGTATCTTTTTTATT GTATTCTGAAGATAATGAAATATTGTTTTAGTTGTTAGTAGTTTATGTAATTATGTGTTTAAGTCGCAACTCATGAGGAG GCTAAATTATGCTGGGAGTGTCTCGTAGTATTTTTGTTTAAAGATAAACTTCAGGTATTATGTTAAGACAAAGGAGGGAG GCTATTGGTAACGTGCTACCAAATTTGGATTGATTTATTGTCAGCTTAACATAGTGTTTCCTGATTTTCTTAATTTGAGA GAAATTTTTGATATATTATTAGGCGGGCATAAAAAAAGACTGTCATACCATTGAGTTTAAGCTTTAGATGTAGTACCATG TTGAACTTTGCCTAGTGTTCTGATTTCTGACTCCTATTGCAAATCTTGAACTTACTCTTGGCAGCTCTAACTTTTCAAAT ATCTATTTTTCTCAGTGCAACATAATAAGTTGGATTTTTAATAATAAAATACAATGAATTTGATTTTAGCAGAGATTTGT AGTTGTTACACTAGATAATACACGGCATGATTTCAATCTACATATGCCATGGTGGTTATGTGTTTGTGTTGACTGTATTC TATGATGTCTCCTATTTGCAGGAAAAGAAACGGAATAATCTGAGAGACTTTCTGAATGTTGCTGGACCTATGGGCGTCAC ACATTTCCTCATATTGTCAAAAACTGCTACTTCACCTTACTTGAAAGTCGCAACAACTCCGCAAGGACCTACTCTTTCAT TTAAGATACATGAATACGCATTGGCTGCTGACGTTGTTCGATCTCAATTGCATCCTCGATGCCCTAAAGATCTATTTAAA AATTCTGCTTTGGTAAAGTATTTCTTTGTATTAACATGCAACTGCGGCATCACATTTTCTTAAAATTTAGATAACAAAAT GAAATGTCAGGACTAGTTACTTTTCATGTCATTTGTTCTTCAAATGCCAGTGTGGCTGAGTTTTTTCCCAAGATTAAAAT TTGTTAATTGAATGCAAGTAAATGACTTCTATCTCTTAGTCGGTTGCTTTGCTACTAATTGTTGTTACACCAAACAGGCA TTTGTTTAATCTTTGTGATGTCCATTCTCATCTTATATCAATGTCTTGTATGATTTAACTCTTAGTGAGGGTATTTAAAT GTTCAAGGTTTGGCACCAAAATATGTGATTGTCTATCAGTGTAACTATTAGTAGTTAACTTGTATGCTTTTATTATTCAT CCAAGATTGATCCCTTATTGTTTTCTTGGCAGATTGTGCTTTCTGGATTTGTGAGTAGTGATTTACATCTAAAGCTTACA ACAAACATGTTTCAGAATATCTTTCCAACAATTGATGTCAAAACTGTGAGTTTGACTGACAGACATGCACATATCAATGA CTTGCTTAACATCCAAGCTGTTCATCTCCTAATGCAACAACATTTTGTTTCAGGTTAAACTCACCTCTTGCCAAAGGATA GTGTTGCTTAACTACAACAAAGACACGAAGCTCATTGATTTTCGGCATTATTCCATAAGATTACAACCTGTAGGTGTTTC ACGCAGATTAAGAAAACTTGTGCAGAGCCATCAGGTGCCTGATCTAAGGAATCTCCATGACGTGAGTGATTTTGTCACAA AGTAAGAAATCTGCTTATTTAATAAGCTTTCTTGTTTCCTTTTATAATGATTTACTGTAAGAGGGACCTAATGCAATCCC TTTCTGATATCTGACATTTGCATTCCGCCCATTATTTCCTTCTTTATGTATGTTAATTTATGATATTTCATAGTATTGAT GTGTTGAGCTGAATCCTGTCTAGCTCTTAGTTCCCCTTTTTTGTTTTTTTGGTGTGACTCTTTCTTTTTCTTTTGAGTGC ATTAATATATTTTGATTGGGAGATTCAAATATTAGTTTACTTTACTCTGAAAAAAAGGGGAGATTTGCTTATGGTTTTAG AATTTGATTGGGACCTCCTCCAGGTGCTAAATGACGCACCCTTGCAATTATGTAATCGTATAGCATAGATCATAAGCAAC AAAACAGCTTTCTCTATTTCATTTCTCAGCAGAATAATGAGATTAGCCTTTAAAGCAGTTGTCTTGTCTGTATTAATTTG ACATGTGGCTTTCTAAGATTTTTCCCTCATGGCCTACTATTTCCTCAATTGTTGTATTTTACTTGTTTCTATGTGAGAAG CAGTTCAGATCAGATTAAGAATAACGTAGTTTAGAAATGAACTAAAAATCGTGTGTTAGACAAGATAGTTAATCGTGGTA TTTTCTTAATATACTTAATTTCTTCATTTGTGACTTGTAAGGGCTGGGTATGGATCAGAAAGTGAAGCAGATGAAGAAGC AGCAACAGTGACTTTGTCTAGTGATATTGGTAGAGTTAACCGTGCTTCCACAAAAAGTGCAGTCAAACTTCAAGAGATTG GTCCCAGGATGACTCTTCAACTAGTTAGGATCGAGAAGGGACTGTGTTCCGGTGAAGTCCTCTTCAGCGAATATGGTACA TCATCCTACCCTTTTCCTTCGAATACTAATTGAGAAATCTATGGCATAGAATGCCACAATACGATTATCTTTTGTTGTCT AAATTCATTGAAGGCATAGATGTCAATAGAAGTTCTTTTGAGCTATTCTTGACTTAGACTCTTCATTAATGACTTTGAAC TATTTTCATGTGCAATACAGTTAAAGTTTTCTTCCTCCACGAAACATTTTTCATGTTAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0528700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAAGCAGAAGAGTGGGGGGTTTAGGAGGCCTGTTGTCATCAAGAACCATAAGCAACCACAGCAGCAGCCAACTGT GGATCCTATCACAGGGAAGAAGATCCCTAAGAGTTTTGTGTTTTCACGAGGGAAGTTGCCTGCTCCTCTCAAGCAGCTTC AGATGGACCTCAGAAAGTTGATGCTGCCATATACTGCTCTTAACCTCAAGGAAAAGAAACGGAATAATCTGAGAGACTTT CTGAATGTTGCTGGACCTATGGGCGTCACACATTTCCTCATATTGTCAAAAACTGCTACTTCACCTTACTTGAAAGTCGC AACAACTCCGCAAGGACCTACTCTTTCATTTAAGATACATGAATACGCATTGGCTGCTGACGTTGTTCGATCTCAATTGC ATCCTCGATGCCCTAAAGATCTATTTAAAAATTCTGCTTTGATTGTGCTTTCTGGATTTGTGAGTAGTGATTTACATCTA AAGCTTACAACAAACATGTTTCAGAATATCTTTCCAACAATTGATGTCAAAACTGTTAAACTCACCTCTTGCCAAAGGAT AGTGTTGCTTAACTACAACAAAGACACGAAGCTCATTGATTTTCGGCATTATTCCATAAGATTACAACCTGTAGGTGTTT CACGCAGATTAAGAAAACTTGTGCAGAGCCATCAGGTGCCTGATCTAAGGAATCTCCATGACGTGAGTGATTTTGTCACA AAGGCTGGGTATGGATCAGAAAGTGAAGCAGATGAAGAAGCAGCAACAGTGACTTTGTCTAGTGATATTGGTAGAGTTAA CCGTGCTTCCACAAAAAGTGCAGTCAAACTTCAAGAGATTGGTCCCAGGATGACTCTTCAACTAGTTAGGATCGAGAAGG GACTGTGTTCCGGTGAAGTCCTCTTCAGCGAATATGGCATAGATGTCAATAGAAGTTCTTTTGAGCTATTCTTGACTTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0528700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKQKSGGFRRPVVIKNHKQPQQQPTVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPYTALNLKEKKRNNLRDF LNVAGPMGVTHFLILSKTATSPYLKVATTPQGPTLSFKIHEYALAADVVRSQLHPRCPKDLFKNSALIVLSGFVSSDLHL KLTTNMFQNIFPTIDVKTVKLTSCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKLVQSHQVPDLRNLHDVSDFVT KAGYGSESEADEEAATVTLSSDIGRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGIDVNRSSFELFLT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	29	29	-	–
PANTHER	PTHR12661 View details on PTHR12661 Search for proteins/transripts with this domain View external data on PTHR12661	16	306	291	4.0E-123	–
PANTHER	PTHR12661:SF5 View details on PTHR12661:SF5 Search for proteins/transripts with this domain View external data on PTHR12661:SF5	16	306	291	4.0E-123	–
ProSiteProfiles	PS50833 View details on PS50833 Search for proteins/transripts with this domain View external data on PS50833	36	297	262	31.429	IPR007109 Show description in modal box View details on IPR007109 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00879 View details on SM00879 Search for proteins/transripts with this domain View external data on SM00879	39	291	253	1.5E-64	IPR007109 Show description in modal box View details on IPR007109 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04427 View details on PF04427 Search for proteins/transripts with this domain View external data on PF04427	47	290	244	1.8E-45	IPR007109 Show description in modal box View details on IPR007109 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0528700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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