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LotjaGi3g1v0530300.1

Overview

Field Value
Gene ID LotjaGi3g1v0530300
Transcript ID LotjaGi3g1v0530300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185); TAIR: AT3G28700.1 NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185); Swiss-Prot: sp|Q54S83|NDUF7_DICDI Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151RBA0|A0A151RBA0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0530300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:94730272..94734900) extracted from Lotus japonicus Gifu genome v1.2.

CATTAATCTTGTTTGCATAATTAGTGGGGGTACCGTATACTTACATTCACCCGCTCTAACAAATGAGTGTCAGTCGGCGA ATGTGCCTTAAAATTCACAATAACAACGTGGAACAACATTCCAATAACAACTTGTGTAGTCAAACACAACAACAATACCT TATTCTAGCAAGGGTATGAATGAATCATGGAACAAGATATAGATAATTGCTTCTTTTTTTTTTTTTGTCTATTTTCACAA GAAATGCTCAATTTAATTTCCAATTAGAAATAGTTTTCACATAACAACAATATTACAAACTCCCTTTCATTAGAGTGAGT GAATGATAGTGCAGCAAAGCCAAAATGCTGAGGAAAGTGCTACACCAATCTCTCCCATTTAACCGTCGCATCGCCACCGC CGGTTCGGCAGCACCGCCATGGTTATCCTCCTCTTTTTCTTCTTCTTCAATCTCCATCGACCGCTCTGGCCTTTACAACC CACCTGGTAGGTACTACTACTCTCCTCAAGTTTCCATTCGTTCTCCCCTTCTTTTACTTCCCATTCAACTTCTCTTCCTT GTTCCTTCTCGCAGACCATTCTCACCACCCCACTTCCGATTCTGAGCTCGTCAAACACCTCAAAGGAATCATCAAGGTTC CCATTTCCCCCATTTCCATTACTTGGTTGGATTCAATTTTATATTCTATGTTTGAATTGAACTTGCTCAGCTATAACCAA TTGTGACTAATCCAATTTTTACATGATAAAGTTTTGATTTTAATGGCACTATCTAACTTGGGTCTTGCTGGTTTTTTAAT TTATGTTTGTTGGTTATTGCTGAATTCTCAGTTCCGGGGAGGCCCTATTTCACTAGGTGAGTACATGTCAGAAGTTTTGA CAAATCCTAAAGCTGGATACTACATCAATAGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCTCCTGAAGTGAGC CAGATGTTTGGTGAGGTGAGGTTAATAGTGCACTTATCTTTGATTAACCTTATGATGTCTTTTGTGGAATCAGGACCCTC TTGTGAAAATTTCATGACATTGTCATATTTAAATTTTGTGTATATGTCTCTTTTCATGTGTATTAAATATGTGGTACCCT CTGGGGAGAGATAGTCACGATGTTTTATTTGACATTGTCATGTGATATGAGAGGGTACGAATCAGTATTTTCGGGCATTA ACTAGACTTGACTTTGATTGTGCTTCCAATTAATGACAAGAAGATTCTAATGTCTTGTTCATGTAAATGTAGATGGTTGG TGTCTGGGTGATGTGTCTATGGGAGCAAATGGGCCAACCCCAAAGAGTAAATCTAGTTGAGCTAGGCCCGGGGCGAGGAA CTCTAATGGCTGATCTTCTTCGTGTAAGAAACCACAATTTTGACATGCTTTTATCCTGCAATTTTTATTATAAATGTTTG GCACTTTTGTTTACTTGTCAATTAAACGTTAAAAAGGCAACATCCCTTCATTATGATTAAAGTTCTTAACTTCTTATAGG GTGCTTCAAAATTTAAGAACTTTGTTGAGTCATTGCATGTGCACCTGGTGGAGTGTAGTCCAGCACTGCAGAAGCTTCAG CACCAGAAGTTGAAATGCATTGATGACGAGAATGCAGCTCAAGATGCTGATAAAAGAACTGTAAGCTCTTTGGTTGGCAC TCCTGTATCATGGCATGCTACACTGGAGCAGGTTCCTTCAGGATGTATGTATTGCCTTTCCAATCAAAATAGGCTTTTGG ACACGAAATACCAAGTTTAACTTGTTATATGAAAAATCTAAGTTTATCTTAAGTTATGTGTTAACATAAATATCTTTTAG TACTGTATTGAATTATGCCCTGAACAAGTTATTCCTTTTGTTGTTCTCCAGCACCGACAATTATCATTGCACATGAGTTC TTTGATGCCCTACCAGTCCATCAATTTCAGGTGATAGAATGCTTGAGCTATTAAACTGAAATAAAACTAAGGACATGATT AAGCTGCAAAATTATGTTATGAAATTTGAAATTCTGCAAGAATATTGCTTTCAATTTGTCTTGCATAGTGTCTTGGCTAT TTTCTCTCTAGCATTCTTTCATCCTCTGTTCTGTTTTTGTCCTTTTTTTTTTTTGCTGGTAACTGATACATAGTTCTACC CGTTGTTTTCATTTGAGTTAGTCCATCTATTAAGTTGTGCCAAACCTGTGCATTGCTATGGCCTGTCTTAACTATGTCTT TGCTATCTCACTGTTTGATCATCAAGGGACTGAATAATATTTAAGATGTTCAAGTTTTGTGCATGAACTGTTGCTTCTCA TATTTAAATGATTCAAATTTCTTACATTTTTTGGCTTTGAAGAGCTTGGTCTTGGCAAACAATCTTTGTGTTCCTTAGAG TAAAAGTCTTTTCCTACTCATACTTTACACTGTTTTTATAAACAAAAAGATACCCAACTTGGCTGCAGCCACCTTTTATA TATTTTCTATTAGCATCACATTTCCATGAAATATGATAGTGATTATTTATCTACAGAAAGCATCTCGTGGCTGGTGTGAA AAAATGGTTGATGTCGCTGAAGATTCATCATCGTAAGTATTGTAATGTAATATACTGAAACTGCATTTCTGCTGAATTTA GTGTATCTTACTTCTTACATACATTGGGTAGGTTTCATTTTGTTCTATCACCACATCCTACACCTACAACACTATATTTA TTGAAACGGTGCAAGTGGGCTGCAACTGAGGAGATTGCAAAACTCGATCAAATTGAAGTTTGCCCCAAAGCTATGGAGTT GAGCCAGGACATTGCTGAAAGAATAAGCTCTGACGGTGGTGGAGCTCTAATTATTGACTATGGTTCAGATGGAGTGATCT CCGATAGTCTCCAGGTCAAGCATTCCAGTCTTATTCCTTGTAGTATTACTATCTAGTTTTTACTGTGTTTTATCTCCCAA GTTTGCATCCTTTATCCTAATTTTGTCTTGCATAGTACTTCCATGAAAATATTAACATTAGCACAACATGTTGATTAAGT TTATGATAAAAATTGACAAACATCATGATACTAGTCAGAACCTGTACGTTTAAGTACATCTTTTCATCTAGATGAATGTA TGTGCTTTGCGAAATCTAAGGGTTAGGTATAGAACCTGGAGAGAAACGTCCTTAGTATCTGTCTTTTTCTTCTGCTTGCT TTGCTTGTGAAATTGTAACCTATGCTGTCACTGGAATCTATTTGTGTGCCATTGGGGAACCATTAGGTGTGTTGCTGTAA ACAAGTTTCTTCTTGAAGATTAAATTACAACTTACGGATATTTTTTTACAAACCTTTGCACAGCCCAATGTCTGAGTAAA CCTTTCAATTCAATGTGAAGTTGATACATTATATTTAAATTGTCCCCCCTCCCATTGCTTTCTTTAACATGGTTTATGAA TTTTTGCAGGCGATTCGGAAACACAAGTTTGTCAACCTTCTAGATGATCCTGGGTCTGCTGATATCAGTGCATATGTTGA TTTCGCTTCCATCAAGCATTCCGCAGAGGAAGCTTCAGGTGCTTTTCTACCTAATAATAGGTGTAACATAGTATTTAAAA TGAAAACATATTTGCTTAACAAATAAAGATTAGTTTTCAACTGATTTAGTCTGTGTTTGGGTAAACATCTAAATTAACCA TTTATAGCGATAAGTGCTTCTATAATCTAATTTGATTAACTTTTTGAAATAAACTCAAAAATAGGTTATAGGTAGACATA AACGCTTATTCATAAGCTAATCTAAGCGGCTTATGAAAATAAGCTCAAAGTGGCTTATATGTTGGTCATAGACTCATAAG CTATTTACATGAACTCTCTCAATCACGTGCATAAGTGTTAACTGTGTAGCCTGTAAGATTAACTCAAATAAGCTTTTTGA AACGGTAATTTAATATTTATGCAGGAGAAGTATCTGTCCATGGGCCAATTACTCAATCACAATTTCTTGGCTCCCTTGGA ATAAACTTTCGCGTCGAATCTCTCCTTCAAAACTGCACTGAAGAACAGGCTGAATCTTTGAGGACAGGATATTGGCGTCT TGTCGGTGATGGTGAAGCTCCCTTTTGGGAAGGACCTGATGAAGGTGCCCCCATTGGTATGGGTACCCGGTATAAGGCAA TGGCTATAGTAAACAAGAAGCAAGGTGTTCCAGTTCCTTTTCAGTGAAAACCCAAACCATAGTTGGTTTTTAGGTGCTCG TGACATTATAAGGTGACCCTAATCAGAAGTTGGGACTTAGGTTCCTGCTTTCCCTTTTCTTTTTCTTATTCATTAATTTA CCTTTTTTGTACTTCTGTATTATAAGGGTAGCAAGATGTAACAGTTCACGTAATAGTTTTGATATCGGTCCCCTCATGGT GCTCAGAAAGGAATAAAAATGTTTGAATATGCATTTTTCAGGTGTAAAAATAAAAGTAGAAAGATTGACTATGTTAGTTG CATGCTCACCTCTTGTAAAAATTTATCTGCCAAGAATTTCACTTGATTTTTACCTAAAGCAATACGCCCTTCCGTAAGTT CTTAGTAGGCTTGTAAATGCTTTAGTTCTGAGATTGGATATCTTCCTCCACCTTTCCTTCAACATTTTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0530300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGAGGAAAGTGCTACACCAATCTCTCCCATTTAACCGTCGCATCGCCACCGCCGGTTCGGCAGCACCGCCATGGTT ATCCTCCTCTTTTTCTTCTTCTTCAATCTCCATCGACCGCTCTGGCCTTTACAACCCACCTGACCATTCTCACCACCCCA CTTCCGATTCTGAGCTCGTCAAACACCTCAAAGGAATCATCAAGTTCCGGGGAGGCCCTATTTCACTAGGTGAGTACATG TCAGAAGTTTTGACAAATCCTAAAGCTGGATACTACATCAATAGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTC TCCTGAAGTGAGCCAGATGTTTGGTGAGATGGTTGGTGTCTGGGTGATGTGTCTATGGGAGCAAATGGGCCAACCCCAAA GAGTAAATCTAGTTGAGCTAGGCCCGGGGCGAGGAACTCTAATGGCTGATCTTCTTCGTGGTGCTTCAAAATTTAAGAAC TTTGTTGAGTCATTGCATGTGCACCTGGTGGAGTGTAGTCCAGCACTGCAGAAGCTTCAGCACCAGAAGTTGAAATGCAT TGATGACGAGAATGCAGCTCAAGATGCTGATAAAAGAACTGTAAGCTCTTTGGTTGGCACTCCTGTATCATGGCATGCTA CACTGGAGCAGGTTCCTTCAGGATCACCGACAATTATCATTGCACATGAGTTCTTTGATGCCCTACCAGTCCATCAATTT CAGAAAGCATCTCGTGGCTGGTGTGAAAAAATGGTTGATGTCGCTGAAGATTCATCATCGTTTCATTTTGTTCTATCACC ACATCCTACACCTACAACACTATATTTATTGAAACGGTGCAAGTGGGCTGCAACTGAGGAGATTGCAAAACTCGATCAAA TTGAAGTTTGCCCCAAAGCTATGGAGTTGAGCCAGGACATTGCTGAAAGAATAAGCTCTGACGGTGGTGGAGCTCTAATT ATTGACTATGGTTCAGATGGAGTGATCTCCGATAGTCTCCAGGCGATTCGGAAACACAAGTTTGTCAACCTTCTAGATGA TCCTGGGTCTGCTGATATCAGTGCATATGTTGATTTCGCTTCCATCAAGCATTCCGCAGAGGAAGCTTCAGGAGAAGTAT CTGTCCATGGGCCAATTACTCAATCACAATTTCTTGGCTCCCTTGGAATAAACTTTCGCGTCGAATCTCTCCTTCAAAAC TGCACTGAAGAACAGGCTGAATCTTTGAGGACAGGATATTGGCGTCTTGTCGGTGATGGTGAAGCTCCCTTTTGGGAAGG ACCTGATGAAGGTGCCCCCATTGGTATGGGTACCCGGTATAAGGCAATGGCTATAGTAAACAAGAAGCAAGGTGTTCCAG TTCCTTTTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0530300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLRKVLHQSLPFNRRIATAGSAAPPWLSSSFSSSSISIDRSGLYNPPDHSHHPTSDSELVKHLKGIIKFRGGPISLGEYM SEVLTNPKAGYYINRDVFGAEGDFITSPEVSQMFGEMVGVWVMCLWEQMGQPQRVNLVELGPGRGTLMADLLRGASKFKN FVESLHVHLVECSPALQKLQHQKLKCIDDENAAQDADKRTVSSLVGTPVSWHATLEQVPSGSPTIIIAHEFFDALPVHQF QKASRGWCEKMVDVAEDSSSFHFVLSPHPTPTTLYLLKRCKWAATEEIAKLDQIEVCPKAMELSQDIAERISSDGGGALI IDYGSDGVISDSLQAIRKHKFVNLLDDPGSADISAYVDFASIKHSAEEASGEVSVHGPITQSQFLGSLGINFRVESLLQN CTEEQAESLRTGYWRLVGDGEAPFWEGPDEGAPIGMGTRYKAMAIVNKKQGVPVPFQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 19 19 - –
PANTHER
PTHR12049:SF7
41 456 416 1.2E-176 –
PANTHER
PTHR12049
41 456 416 1.2E-176
IPR003788
Gene3D
G3DSA:3.40.50.12710
46 457 412 2.5E-107
IPR038375
SUPERFAMILY
SSF53335
69 456 388 9.97E-98
IPR029063
Pfam
PF02636
117 379 263 2.6E-76
IPR003788

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0530300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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