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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0531900 |
| Transcript ID | LotjaGi3g1v0531900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT3G19860.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LT23|BH121_ARATH Transcription factor bHLH121; TrEMBL-Plants: tr|A0A151RLV3|A0A151RLV3_CAJCA Transcription factor bHLH121 family; Found in the gene: LotjaGi3g1v0531900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94897644..94901729) extracted from Lotus japonicus Gifu genome v1.2.
TTAATGAAGTTATTTAAAAGAAACACATTATATATAATTTTTTATTTTTTGCTCTTCAGTTGTGCTGCCCCAAACCAATC ATTAGCGAGGATTGAAAAAAGATAACAGAGGAATACAATACGACAGCAAGAACCTATCGTTTCATATGAGACAAAACCAC AAGGCAATAGGGTTGATTCGAACAACACAACACACGAATTCAAGTGCCAAACATCAAAATTGAAGATAACCACCGATCAC CGATCACAGTTTCCGAGGTAAAACCTCTTCCTCAATCGCCGCGAAATCTTATTCAACCCGAATTGAAGCTGATTTCCCCA TCTGTTTTCAACCCCAATTCGGGTACTAATTTTTCAATCTTTATCGTTTAATTGACATGGGTTTTTGTTGTCCTGCTATG ATGCCTTTGGGTTAGTTTTGGGTATTCCCTGCGTTAAAAAATTGAACCCTTATCTCTCTGAAATTACTGTGATTCCATAT AAGTGTGTATATGACCATTGCTAGTTGTAATAAAATTGTGAATGCCTTTGATCCCAAATTGGTATTGTTTACTACACGAA CTTGCCTTGATGATAGTTATGTTATGTGTATTCTAGTTTGTGTTTGAGAATTGTATTAGTTTACTTAGGAGTGAGAATAA TAATTAAAGCGGGTTTGTTATTGTACTGCTACTGCTTGATTATAACTACAATGGTTAGTGTTTGAGACAACTTATGTAAA TAGCTTATGACCTACCTATAAGTTGTTTTAAACTTATTTTCATAAGCTGCTCAGATTATCTTATGAATAAGTGCTTATAG CTTGATACCTACTTATAACCTATTTTGAGCTTCTTTCAATAAGTTTCCTACATTAGCTTAAGCACTTATTATGTGTTAAG CGCTTAATTAAACTCTTTGCCAAATGCTCTTGTGAGTTGTGACCCTATTCCCACTTGAGCAGTATAAGAACAACAGAAAC ATTAAAATAAACGGATAGAAGTAAAAGCTTTGGAGAGTTTTTGAATAGTGGAAATTTTCTATGGGATTTTAACTCTAGAA ATTCAACCAGACTTGGTTACGGGGAACTTAGGTTATACTTCTATGAAATTAAATATCTTCATTAGAAGAAGTGTTGGAAC AAATTCTTAAGTGGTGGCCTTTGGATGTGACAAAGCTTTCTTCTTGATTTTACTTGCTTTATTTTGATTATTTTGGTTTG TATGATTAATGAAAGCTCAAATCAATGACGTAACCTTAGATTAATCATTCTGTTTTTTGGAACTCACGTAGCTGCTGCCG AAGCCCTGAAGTCGAACTAATGGATTGTACAGCTGCAAGAAAGACGCAAAAGGCTGACAGAGAAAAGTTAAGGAGGGATC GACTCAATGAACAGTTTGTAGAACTGGGTAACACTTTAGGTATATCGAGTTTCACTTTCACAAATTGGAAAATAACAAAA ATTGAGTGGACCGCTGAAAAATGTCATGGGTTCTTGATATATTGTTATTCCTGACTTTCCAAGATGTACAACTAGAAGGT TCTCCTTCATTAAATAATGTTTCAACTTTCAATAACTGAAGTATTGCAACTAACAGTTCCCTCATTGCTTTTGTTATACA AATAACGCATAGGTTTCAATTTTGTTATTTCATTCCCAATTATTCTGAATTTGCCCACCTTATTTCTTCTCTTCTAACAT TTTCCTTCTCTGTCCTCTTACCTGCCCTCCACTCTCATGGGAGAGAACAAGTTGTGTTTCCTCTGGAAAGATTTCAATTT CATGCTTTCTATTTGATCTATTATCCAGGTTGGGAAGCATTTGGACTTGTATTTCCTCTGCAATTATGCATGACTGTGCA ATTAGGTTGTATGTTTTAGGGCTAGGGGAAAATACTGTGTATGAATGATCTAACATGCTAAATTAAGGTGTCTTAGGTTA ACTTGCCCGAAGTGCTGGTTCGGCCATAAGGTACTATAGTGCTGCAGTTTAGGTAGAAGAAAATGATTTTTCTTTGGCTT TTTCCTATTTGTATATTGTCAATGATTTCAGTTTACATTCAGTAAAGGTTAATTTAGGTTTCAAATGCTGATGATTTGTA CCAAACAAATTGTTTCCTTGTTTCTTTAGAATTTATCTTTGTATTAGTATTTGATGCTTAGAACTAAGAAAACAGAACTC AAATCACTCTGTGCCTGTGGTGACTCTGAAATGCAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGAT ACTATTCAATTGCTGAAGGACCTTACTTCTCAAGTCGGTAAACTCAAAGATGAATATACTATGCTAAATGAAGAATCTCG CGAGGTAATAATGTCTCTTAATGCTTTGATGAAACACCTTAATGATTTTGGGTCATAAAGTAATAAAGGAAATGATTTTA TTTTATTTCATTTTCAGTTGGCCCAAGAGAAAAATGATCTTAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAC TTGAACAATCAGTATCAGCAGCAACTCAGGAGTATCTACCCGTGGACTGCAATGGATCCTTCAGTTATGATGGCTCCTCC TCCATCATATCCATATCCGGTACCAATGGCAGTACCTCCTGGTCCGATTCCTATGCAACCGTACCCTTTCTATGCTAATC AACATCCTGCAGTCATGCCTAACCCCTGCTCAACATTTGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCT ACCCATTACGTATCCCCTCCACTTCATCCAGGTAGTCGGTCCAATGTGTCAGGAAAACAAAACTCCAAAAACAAATCATC CAGGGAGAGCAAGGCTGATAAAAATGAAGATTCAACTGATGTCACTACAGACCTGGAGCTGAAGACACCCGGGTCATCAG CAGATCAGGTTAGTGTTGTTTTTCATGCAAATCTTGTAAGCATTAGCTCTGGTAGAAGATATTGTATTCAAGTGGTGTTC GGTGTTGAGTTTTGCAGGTTTTGTCATCCGGAGAAAGAAAATCCAGCAAGTTGCCAAGGAAGGATAGCAGTTTCACAGAT GGTAGTTCATTTGGTAGGTGTTCTTCATCTCATAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAAGAAGTC TAATGAATGAGAAAGGACATACTTTTAGACAGGTGCTAATGCCTTTGGAAGCCACCATGAAGTTTATCATTGTGTATCTG CTGCAACTATCTGGAGGTATAAGTGTATGTTTGGATACCAGTTCAGTGCAATGTGAACGGACTTCCGTCCTAATCCATAA GTAAAGTTCTATTCACTTTTTTCTCCAAGTATGTCCATTTGCAATGGTGTCAACGTGTATCCAAACATAGCTTTAGTTAC TTTTTTCTAATCCAAATAAAAGTCTCTTCTGTTCCTTCTTCCTGACGACAAATTTATTGTAAGTAGGTTTAATTGTTACT ATTTCTTGTAAAAATGTGAAATTGCAGCTGGACAATCTCCAGGTTGACCATTGTGGCTAATGTGTAAAAAGGAAAGGTGT TTGAGCTAACTACACCGTCTTTTAGTCCAACTAAGGTCGTTTGATTCTTGAATCTTGATATTATGTGTAAGCAATAGAAC TTATGCTTGCACGTCAAACTCACACTCTCTGGTAGTAATATTTTTTAAATATAGTTTTTTGAGCGTTTTGCAAAGTATTA AATCAATTTTCCTGGTGATGATTTTTGGCACTAAAACTACAAGTGAATAATTTTTTGCCTCTTCTTCAGTTTTAAGAAAA TCTTATCGACCAGCTTAGATTGTCAAGTTCTTTCTTGTAAATGAGAAGATCAATCAGTCCAAAAAAATGTCACAAGTATG ATAAAGAGAGAAGAGATTGGATGTGTTTGGTTTTTGTTGAACTCAATGTGGATATACGTTTAAATTGATGTAATAAAATT TTGCTTTACTGGTCAAATTTCTGCTTCTCAGTTGGTGGTATATTGAGATATGGAAATCCACGTTTCCATTTACATAAATT CCAATTCAGAAACATATGCACACTACAAAGTTCGAGAATAATCAGAACTAGAAGGGTACCTGTCAATTAGAGATACATAA ACAGAG
CDS sequence (LotjaGi3g1v0531900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTACAGCTGCAAGAAAGACGCAAAAGGCTGACAGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGT AGAACTGGGTAACACTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACTATTCAATTGCTGA AGGACCTTACTTCTCAAGTCGGTAAACTCAAAGATGAATATACTATGCTAAATGAAGAATCTCGCGAGTTGGCCCAAGAG AAAAATGATCTTAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAACTTGAACAATCAGTATCAGCAGCAACTCAG GAGTATCTACCCGTGGACTGCAATGGATCCTTCAGTTATGATGGCTCCTCCTCCATCATATCCATATCCGGTACCAATGG CAGTACCTCCTGGTCCGATTCCTATGCAACCGTACCCTTTCTATGCTAATCAACATCCTGCAGTCATGCCTAACCCCTGC TCAACATTTGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCTACCCATTACGTATCCCCTCCACTTCATCC AGGTAGTCGGTCCAATGTGTCAGGAAAACAAAACTCCAAAAACAAATCATCCAGGGAGAGCAAGGCTGATAAAAATGAAG ATTCAACTGATGTCACTACAGACCTGGAGCTGAAGACACCCGGGTCATCAGCAGATCAGGTTTTGTCATCCGGAGAAAGA AAATCCAGCAAGTTGCCAAGGAAGGATAGCAGTTTCACAGATGGTAGTTCATTTGGTAGGTGTTCTTCATCTCATAGTGT TCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAAGAAGTCTAATGAATGA
Protein sequence (LotjaGi3g1v0531900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCTAARKTQKADREKLRRDRLNEQFVELGNTLDPDRPKNDKATILGDTIQLLKDLTSQVGKLKDEYTMLNEESRELAQE KNDLREEKASLKSDIENLNNQYQQQLRSIYPWTAMDPSVMMAPPPSYPYPVPMAVPPGPIPMQPYPFYANQHPAVMPNPC STFVPYLAPNTLVEQQSTHYVSPPLHPGSRSNVSGKQNSKNKSSRESKADKNEDSTDVTTDLELKTPGSSADQVLSSGER KSSKLPRKDSSFTDGSSFGRCSSSHSVQDSSSSSVVGSKKSNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 282 | 281 | 1.7E-145 | – | |
| PANTHER | 2 | 282 | 281 | 1.7E-145 | – | |
| Gene3D | 3 | 86 | 84 | 3.2E-11 | ||
| Coils | 5 | 25 | 21 | - | – | |
| SUPERFAMILY | 6 | 75 | 70 | 1.18E-13 | ||
| ProSiteProfiles | 6 | 56 | 51 | 12.798 | ||
| CDD | 7 | 60 | 54 | 2.5289E-6 | ||
| Pfam | 7 | 56 | 50 | 1.6E-8 | ||
| SMART | 12 | 62 | 51 | 7.4E-7 | ||
| Coils | 53 | 108 | 56 | - | – | |
| MobiDBLite | 178 | 283 | 106 | - | – | |
| MobiDBLite | 178 | 200 | 23 | - | – | |
| MobiDBLite | 201 | 220 | 20 | - | – | |
| MobiDBLite | 221 | 240 | 20 | - | – | |
| MobiDBLite | 249 | 283 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0531900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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