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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0532700 |
| Transcript ID | LotjaGi3g1v0532700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT3G54820.1 plasma membrane intrinsic protein 2;5; Swiss-Prot: sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5; TrEMBL-Plants: tr|I3SFY5|I3SFY5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0532700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94965699..94967221) extracted from Lotus japonicus Gifu genome v1.2.
GCCACCAGCTCAATGTTTCTGCACTGCAAATTGAGGTGATAGTTAGTTATGGATCCAACTGATTGCAGAGTAGTTGACAT TGATGATGCAAGGTGCAGCATGGTTGACAAGAAGTCTCCCAATTTTCTTGCTTCCATTGGTGCTCATGAATTTTACTCAA TTGAGGTAATTCATCTTTGAACTTTGAACAAGAGTACTACGCTTCCTATTCATAGAAGAATTTTTGCAGGAGTATTTACA TGATTCAGGATAATTTACTCTTTCTTAACACAACACAACCAATTAAAAAGTTCAGGATAATTTACATGATTACTTGGGTG AGAAGTTACAAAGTATAGCTTTTAAACTTACATGTTTTGGATTTTATGTTACCACAATCAAAATATTATATATGTTATTA ACCAACTATTCTTAAAACTTAGGCGGTTAGGTGAAAACACATGAATAATTTTATATTATATTTCTAACACCGTCATCTTT CAGATGTGGAAAGCAGCGCTGACAGAGTTAATGACAAGTGCTTGTCTAATGTTCACTCTGATAAGTACAATTATTGCGTG CCTGGATTCACATGAGGTTGATCCAAAGCTTATTGTCCCCTTTGCGGTCTTTGTCATCACCTTCTTGTTTCTTATGGTGG CGGCGCCGCTTTCCGGTGGACTAATCAGCCCTGTTTTCACATTCATTGCTGCTTTAAAAGGTCTTGTGACACTTGCTCGT GCTCTTATCTATGTCTTAGCACAGTGCATTGGCTCGATCATCGGTTTCTACATGCTCAAGTCTGTGATGGACCCAAAATT AGTACACACATATTCATTAGGAGGCTGTTCCATTGGTGAAGATGGAGTTAGTATTGGTTCTAGTTTACAGCAACATGCTG GTGTTTTGTTGGTGGAATTTGCTTGCACGTTTGTGGTTTTGTTTGTGGGTATCACAGTGGCATTTGACAAGAAAAGGTCC AAGGAGTTGGGGTTGCCAATGGTGTGTGTGGTGGTATCTGCTTCTGTAGCACTAGCAGTGTTTGTGTCCATAACTGTGAC TGGAAGGGCTGGTTATGCAGGTGTGGGGATAAACCCAGGAAGATGCTTAGGCCCAGCACTGCTTCATGGAGGCTCACTAT GGAGTGGGCATTGGGTTTTCTGGGTTGGGCCTTTCTTGGCCTGTATAATCTATTATGGCGTCTCTGTGAACATGCCAAAG GAGAAATTTGAGTGGGTGGATGGGGAATATGATATCTTAACGTTGGCTTTGGGTCATAGGAGGATTGTGTCTAGTAATGC TGTTTGAAATGAAAAATGATTCTCTTAAGGTTCCAAGTGTAAAAGGAAAGAGTCAGGTTCATGATTTCATTGCCAGTGTG CATTGGACTACCAAAATCAAATAAATTAGTGTAGGTTTAAGGAAAAGAAATAATCACTTTCTCACTTGTTTGAGGAGTGT TGATTTTCTTTTTAGAGAATTGCATGTATAATTTCTAATTTAATGTCAATGATATCTATGCATGTGTTTCATTTCCAAAT TTC
CDS sequence (LotjaGi3g1v0532700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAACTGATTGCAGAGTAGTTGACATTGATGATGCAAGGTGCAGCATGGTTGACAAGAAGTCTCCCAATTTTCT TGCTTCCATTGGTGCTCATGAATTTTACTCAATTGAGATGTGGAAAGCAGCGCTGACAGAGTTAATGACAAGTGCTTGTC TAATGTTCACTCTGATAAGTACAATTATTGCGTGCCTGGATTCACATGAGGTTGATCCAAAGCTTATTGTCCCCTTTGCG GTCTTTGTCATCACCTTCTTGTTTCTTATGGTGGCGGCGCCGCTTTCCGGTGGACTAATCAGCCCTGTTTTCACATTCAT TGCTGCTTTAAAAGGTCTTGTGACACTTGCTCGTGCTCTTATCTATGTCTTAGCACAGTGCATTGGCTCGATCATCGGTT TCTACATGCTCAAGTCTGTGATGGACCCAAAATTAGTACACACATATTCATTAGGAGGCTGTTCCATTGGTGAAGATGGA GTTAGTATTGGTTCTAGTTTACAGCAACATGCTGGTGTTTTGTTGGTGGAATTTGCTTGCACGTTTGTGGTTTTGTTTGT GGGTATCACAGTGGCATTTGACAAGAAAAGGTCCAAGGAGTTGGGGTTGCCAATGGTGTGTGTGGTGGTATCTGCTTCTG TAGCACTAGCAGTGTTTGTGTCCATAACTGTGACTGGAAGGGCTGGTTATGCAGGTGTGGGGATAAACCCAGGAAGATGC TTAGGCCCAGCACTGCTTCATGGAGGCTCACTATGGAGTGGGCATTGGGTTTTCTGGGTTGGGCCTTTCTTGGCCTGTAT AATCTATTATGGCGTCTCTGTGAACATGCCAAAGGAGAAATTTGAGTGGGTGGATGGGGAATATGATATCTTAACGTTGG CTTTGGGTCATAGGAGGATTGTGTCTAGTAATGCTGTTTGA
Protein sequence (LotjaGi3g1v0532700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPTDCRVVDIDDARCSMVDKKSPNFLASIGAHEFYSIEMWKAALTELMTSACLMFTLISTIIACLDSHEVDPKLIVPFA VFVITFLFLMVAAPLSGGLISPVFTFIAALKGLVTLARALIYVLAQCIGSIIGFYMLKSVMDPKLVHTYSLGGCSIGEDG VSIGSSLQQHAGVLLVEFACTFVVLFVGITVAFDKKRSKELGLPMVCVVVSASVALAVFVSITVTGRAGYAGVGINPGRC LGPALLHGGSLWSGHWVFWVGPFLACIIYYGVSVNMPKEKFEWVDGEYDILTLALGHRRIVSSNAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| PANTHER | 20 | 300 | 281 | 5.6E-144 | – | |
| PANTHER | 20 | 300 | 281 | 5.6E-144 | – | |
| Gene3D | 28 | 282 | 255 | 4.2E-42 | ||
| Pfam | 36 | 267 | 232 | 1.0E-25 | ||
| SUPERFAMILY | 38 | 269 | 232 | 8.9E-31 | ||
| PRINTS | 42 | 61 | 20 | 4.0E-19 | ||
| Phobius | 44 | 64 | 21 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 65 | 75 | 11 | - | – | |
| TMHMM | 76 | 107 | 32 | - | – | |
| Phobius | 76 | 107 | 32 | - | – | |
| PRINTS | 81 | 105 | 25 | 4.0E-19 | ||
| Phobius | 108 | 118 | 11 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| PRINTS | 118 | 137 | 20 | 4.0E-19 | ||
| Phobius | 119 | 137 | 19 | - | – | |
| Phobius | 138 | 170 | 33 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 171 | 193 | 23 | - | – | |
| PRINTS | 176 | 194 | 19 | 4.0E-19 | ||
| Phobius | 194 | 204 | 11 | - | – | |
| Phobius | 205 | 230 | 26 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| PRINTS | 217 | 239 | 23 | 4.0E-19 | ||
| Phobius | 231 | 249 | 19 | - | – | |
| Phobius | 250 | 272 | 23 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| PRINTS | 256 | 276 | 21 | 4.0E-19 | ||
| Phobius | 273 | 306 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0532700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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