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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0533700 |
| Transcript ID | LotjaGi3g1v0533700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT2G17040.1 NAC domain containing protein 36; Swiss-Prot: sp|Q9ZVP8|NAC35_ARATH NAC domain-containing protein 35; TrEMBL-Plants: tr|I1LPE9|I1LPE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95042366..95044294) extracted from Lotus japonicus Gifu genome v1.2.
CTTATAAATACATTCCCTCCCATCACAACTTTATTCAACACAACAGACAGGATTTTCCAAGTGTCTCTTTGTGTTTCTTT GCAGGAAAAGAAAAAAAAAGAAAACTGAAAAAATAGGTGAAGTGAGTTTGCAGTAGCTAATTAAACAGTTCCTAGTCATA ATTAAGGAAGCAAATTGATGAAACATGGCATCCATGGAAGACATGAACAACATCACTGAGGAAACAGCACTTCCAGGCTT CAGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTCAAAAACATGGTTGCTGGCAAGAAACTTCGTTTCGACG TCATTGGCTTCCTCAACATCTATCATCATGATCCTTGGGACTTGCCTGGTAATGAATTTTCTTATTAGTTAAACATAGCT CAATTACTCTGTCTCTGTCTACTCAATTTATGTTTTCTGCTATACTATGTCATGTTAGTTCATACACATTTGACAATATT AATTCATATTTACATAGAATTTAACAGATTGTTACTCCAAAAGTTATTTTGTGAAAATAAACATGATATTGCAATCTATT GTCATTAACGTGTATTTTTTCTATGATATAGGTCTGTCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTACCAAGGGA CAAAAAACATGGAAGTGGAGGAAGGCCTAACCGCACAACAGAAAAAGGGTTCTGGAAAGCAACCGGTTCAGACCGGAAAA TCGTGACCTTGTCTGATCCGAAGCGTATAATCGGGTTGAGGAAGACCCTGGTTTTCTACCAGGGAAGAGCTCCAAGGGGA TCCAAAACCGATTGGGTCATGAATGAGTACCGTTTGCCTGACAATTGCCGACTACCTAAGGTATATACACAATTTGGGGT GTGTGCAAGCTGAATTTTGACCGGCCCAACTCGCTCGCAAGCCAAGTTGGACCGAGTTGGCTTGCGGGTTGCAAGCCAAA TTGACGGCTCTATTAACCCGACAAAACTCTTGTTTGATTAACTAGAAAATAATAAAGACTTGCAACTTATGACATGTCTC TAAATTCCAAATAAACATTATATTAAAATTAGTGGGGGTACTATAATCAAATATTAATAATTTGTTGTACTTGTGTGAAT GCAGGACATAGTGCTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGCTGGAGCAGAGGGCAGCACTGGAGGAAG AGATGAAGCAATTTGGTTCTTCCCCTGCATCCCCTCCTTCATCCACAGACACCATGTCCTTTACACATGAAGACCAAAAC ATTATGTCCCTTCCTTTGTTCCAAGACGTTGTTCTTAAGAAAGAATCTGAAGCTGAAGCTGAAAATGAAGAAATGATGCT ATCTATGTCAATGTCAGTGCCAAAGCAAGAAAAATCACAGACTCAATTGGTTTTCAACGACAGCAACAAAAGCACTTGTG GTGGTGGTGGTTCATCTCTTCAATTGCCCTTGGGGAATGACAAGCTACCAGAGCTTCAGTTGCCAATGGTTACTGACTGG ACCACCCAGCTAACCCAAGATACATTTTGGGCTCACTTGAACAGTCCCTGGCTGCAAAACTTGACTCCTTCAAGCATCCT CAACTTTCATTCATAGCATGTTTGGAACAACTTATTTTTGAATTAATTCTGACACTGGGAGTTACTAACAGGAGTTTCTC CCCACAAATGATTTTCCCTTCAGAATCAATTTTAGAATGATTTTCAAACATGCTATGATCGTGATGCATCATGACTCAAC TGTATAAGTTGCAAGTTAATTTGGCATGTATATGCAGTGAATTAATTAATCGTAATTTATATTAGCTCAATTGATTAATA CTCTGATACATATATGCTTTGCTCAAGTTCTGCCTACCTGGAACTTGAGAACCCTACCCAGCACTTTCATGATGTTAATG ATGTTTTTG
CDS sequence (LotjaGi3g1v0533700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATTGCAATCTATTGTCATTAACGTGTATTTTTTCTATGATATAGGTCTGTCAAAGGTTGGGGAAAGAGAATGGTA CTTCTTTGTACCAAGGGACAAAAAACATGGAAGTGGAGGAAGGCCTAACCGCACAACAGAAAAAGGGTTCTGGAAAGCAA CCGGTTCAGACCGGAAAATCGTGACCTTGTCTGATCCGAAGCGTATAATCGGGTTGAGGAAGACCCTGGTTTTCTACCAG GGAAGAGCTCCAAGGGGATCCAAAACCGATTGGGTCATGAATGAGTACCGTTTGCCTGACAATTGCCGACTACCTAAGGA CATAGTGCTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGCTGGAGCAGAGGGCAGCACTGGAGGAAGAGATGA AGCAATTTGGTTCTTCCCCTGCATCCCCTCCTTCATCCACAGACACCATGTCCTTTACACATGAAGACCAAAACATTATG TCCCTTCCTTTGTTCCAAGACGTTGTTCTTAAGAAAGAATCTGAAGCTGAAGCTGAAAATGAAGAAATGATGCTATCTAT GTCAATGTCAGTGCCAAAGCAAGAAAAATCACAGACTCAATTGGTTTTCAACGACAGCAACAAAAGCACTTGTGGTGGTG GTGGTTCATCTCTTCAATTGCCCTTGGGGAATGACAAGCTACCAGAGCTTCAGTTGCCAATGGTTACTGACTGGACCACC CAGCTAACCCAAGATACATTTTGGGCTCACTTGAACAGTCCCTGGCTGCAAAACTTGACTCCTTCAAGCATCCTCAACTT TCATTCATAG
Protein sequence (LotjaGi3g1v0533700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILQSIVINVYFFYDIGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYQ GRAPRGSKTDWVMNEYRLPDNCRLPKDIVLCKIYRKATSLKVLEQRAALEEEMKQFGSSPASPPSSTDTMSFTHEDQNIM SLPLFQDVVLKKESEAEAENEEMMLSMSMSVPKQEKSQTQLVFNDSNKSTCGGGGSSLQLPLGNDKLPELQLPMVTDWTT QLTQDTFWAHLNSPWLQNLTPSSILNFHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 116 | 116 | 38.339 | ||
| Gene3D | 14 | 121 | 108 | 6.7E-37 | ||
| SUPERFAMILY | 17 | 116 | 100 | 4.58E-35 | ||
| PANTHER | 18 | 267 | 250 | 1.5E-73 | – | |
| PANTHER | 18 | 267 | 250 | 1.5E-73 | – | |
| Pfam | 19 | 98 | 80 | 1.9E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0533700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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