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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0533700 |
| Transcript ID | LotjaGi3g1v0533700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT2G17040.1 NAC domain containing protein 36; Swiss-Prot: sp|Q9ZVP8|NAC35_ARATH NAC domain-containing protein 35; TrEMBL-Plants: tr|I1LPE9|I1LPE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95042368..95044448) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATACATTCCCTCCCATCACAACTTTATTCAACACAACAGACAGGATTTTCCAAGTGTCTCTTTGTGTTTCTTTGC AGGAAAAGAAAAAAAAAGAAAACTGAAAAAATAGGTGAAGTGAGTTTGCAGTAGCTAATTAAACAGTTCCTAGTCATAAT TAAGGAAGCAAATTGATGAAACATGGCATCCATGGAAGACATGAACAACATCACTGAGGAAACAGCACTTCCAGGCTTCA GATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTCAAAAACATGGTTGCTGGCAAGAAACTTCGTTTCGACGTC ATTGGCTTCCTCAACATCTATCATCATGATCCTTGGGACTTGCCTGGTAATGAATTTTCTTATTAGTTAAACATAGCTCA ATTACTCTGTCTCTGTCTACTCAATTTATGTTTTCTGCTATACTATGTCATGTTAGTTCATACACATTTGACAATATTAA TTCATATTTACATAGAATTTAACAGATTGTTACTCCAAAAGTTATTTTGTGAAAATAAACATGATATTGCAATCTATTGT CATTAACGTGTATTTTTTCTATGATATAGGTCTGTCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTACCAAGGGACA AAAAACATGGAAGTGGAGGAAGGCCTAACCGCACAACAGAAAAAGGGTTCTGGAAAGCAACCGGTTCAGACCGGAAAATC GTGACCTTGTCTGATCCGAAGCGTATAATCGGGTTGAGGAAGACCCTGGTTTTCTACCAGGGAAGAGCTCCAAGGGGATC CAAAACCGATTGGGTCATGAATGAGTACCGTTTGCCTGACAATTGCCGACTACCTAAGGTATATACACAATTTGGGGTGT GTGCAAGCTGAATTTTGACCGGCCCAACTCGCTCGCAAGCCAAGTTGGACCGAGTTGGCTTGCGGGTTGCAAGCCAAATT GACGGCTCTATTAACCCGACAAAACTCTTGTTTGATTAACTAGAAAATAATAAAGACTTGCAACTTATGACATGTCTCTA AATTCCAAATAAACATTATATTAAAATTAGTGGGGGTACTATAATCAAATATTAATAATTTGTTGTACTTGTGTGAATGC AGGACATAGTGCTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGCTGGAGCAGAGGGCAGCACTGGAGGAAGAG ATGAAGCAATTTGGTTCTTCCCCTGCATCCCCTCCTTCATCCACAGACACCATGTCCTTTACACATGAAGACCAAAACAT TATGTCCCTTCCTTTGTTCCAAGACGTTGTTCTTAAGAAAGAATCTGAAGCTGAAGCTGAAAATGAAGAAATGATGCTAT CTATGTCAATGTCAGTGCCAAAGCAAGAAAAATCACAGACTCAATTGGTTTTCAACGACAGCAACAAAAGCACTTGTGGT GGTGGTGGTTCATCTCTTCAATTGCCCTTGGGGAATGACAAGCTACCAGAGCTTCAGTTGCCAATGGTTACTGACTGGAC CACCCAGCTAACCCAAGATACATTTTGGGCTCACTTGAACAGTCCCTGGCTGCAAAACTTGACTCCTTCAAGCATCCTCA ACTTTCATTCATAGCATGTTTGGAACAACTTATTTTTGAATTAATTCTGACACTGGGAGTTACTAACAGGAGTTTCTCCC CACAAATGATTTTCCCTTCAGAATCAATTTTAGAATGATTTTCAAACATGCTATGATCGTGATGCATCATGACTCAACTG TATAAGTTGCAAGTTAATTTGGCATGTATATGCAGTGAATTAATTAATCGTAATTTATATTAGCTCAATTGATTAATACT CTGATACATATATGCTTTGCTCAAGTTCTGCCTACCTGGAACTTGAGAACCCTACCCAGCACTTTCATGATGTTAATGAT GTTTTTGTGCCAACATTTGCTTTATTGATGATGATGTTATTAAATATTAACATACCAAACGGTGTTTCAAGTAAATTCAA CTATCTTATGAAAGTGGGATAAAGGTGTTTGTAAAAAAGGTTTGGGAGGATAGAAGCTCCACCACTAGATTCTGATTAAT G
CDS sequence (LotjaGi3g1v0533700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCATGGAAGACATGAACAACATCACTGAGGAAACAGCACTTCCAGGCTTCAGATTTCACCCCACAGAAGAAGA ACTCCTTGATTTCTATCTCAAAAACATGGTTGCTGGCAAGAAACTTCGTTTCGACGTCATTGGCTTCCTCAACATCTATC ATCATGATCCTTGGGACTTGCCTGGTCTGTCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTACCAAGGGACAAAAAA CATGGAAGTGGAGGAAGGCCTAACCGCACAACAGAAAAAGGGTTCTGGAAAGCAACCGGTTCAGACCGGAAAATCGTGAC CTTGTCTGATCCGAAGCGTATAATCGGGTTGAGGAAGACCCTGGTTTTCTACCAGGGAAGAGCTCCAAGGGGATCCAAAA CCGATTGGGTCATGAATGAGTACCGTTTGCCTGACAATTGCCGACTACCTAAGGACATAGTGCTATGCAAGATATATAGA AAGGCAACTTCCTTGAAAGTGCTGGAGCAGAGGGCAGCACTGGAGGAAGAGATGAAGCAATTTGGTTCTTCCCCTGCATC CCCTCCTTCATCCACAGACACCATGTCCTTTACACATGAAGACCAAAACATTATGTCCCTTCCTTTGTTCCAAGACGTTG TTCTTAAGAAAGAATCTGAAGCTGAAGCTGAAAATGAAGAAATGATGCTATCTATGTCAATGTCAGTGCCAAAGCAAGAA AAATCACAGACTCAATTGGTTTTCAACGACAGCAACAAAAGCACTTGTGGTGGTGGTGGTTCATCTCTTCAATTGCCCTT GGGGAATGACAAGCTACCAGAGCTTCAGTTGCCAATGGTTACTGACTGGACCACCCAGCTAACCCAAGATACATTTTGGG CTCACTTGAACAGTCCCTGGCTGCAAAACTTGACTCCTTCAAGCATCCTCAACTTTCATTCATAG
Protein sequence (LotjaGi3g1v0533700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMEDMNNITEETALPGFRFHPTEEELLDFYLKNMVAGKKLRFDVIGFLNIYHHDPWDLPGLSKVGEREWYFFVPRDKK HGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYQGRAPRGSKTDWVMNEYRLPDNCRLPKDIVLCKIYR KATSLKVLEQRAALEEEMKQFGSSPASPPSSTDTMSFTHEDQNIMSLPLFQDVVLKKESEAEAENEEMMLSMSMSVPKQE KSQTQLVFNDSNKSTCGGGGSSLQLPLGNDKLPELQLPMVTDWTTQLTQDTFWAHLNSPWLQNLTPSSILNFHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 13 | 161 | 149 | 2.09E-56 | ||
| PANTHER | 14 | 312 | 299 | 9.3E-103 | – | |
| PANTHER | 14 | 312 | 299 | 9.3E-103 | – | |
| ProSiteProfiles | 15 | 161 | 147 | 54.453 | ||
| Pfam | 17 | 143 | 127 | 1.6E-34 | ||
| Gene3D | 24 | 166 | 143 | 1.0E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0533700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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