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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0537200 |
| Transcript ID | LotjaGi3g1v0537200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myosin-related family protein; TAIR: AT1G51405.1 myosin-like protein; Swiss-Prot: sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1; TrEMBL-Plants: tr|A0A0L9V7W1|A0A0L9V7W1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0537200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95390915..95395037) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAAATTCCCATGAAGAAACAGTGTCCAACTCAGACGCTGGAAATAAATAGAGAGGCAAAAAGCACACAAACAAACAC AGACAGACACACATAACATAACATAACGTTGTCATTAACAACAACACACTCACACCACCACCTTTCATTTGAAATCCCTG TTCTTCCTCTTCACGAGGTTGCACGCCAACGAAGTAAGAAACGACACACCACTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTTATATACTCTCTCTACCTTGTGTGAACTTGCTTCATTCATTCCACTGCATGAGACAATGTCCACAGCACCACCACCA TCAAGAAGACCCAAATGGCACCACCACCCACCTCCTCCTCCCACACCCAGAATCCTTCACTTCCCTCGCCGCCCTCGCCG GAGACCCTCCTCCTCCGCCGCCCGAACGGACCTTAAATGGAACAGGTTGGGAGCTTTGTTTGATCGAGAGAAACGGGTAC CTGATCATAAGAATGTTCCGATAGTGCTGTTGGACCATGGTGGTGGTGAGGGGAGAAGGGAGAGAGTTGAGAGCAGCGAA TGCGGTGGTGGGTCGGCGTTGGAGGAAGAGAAGTGGAAGTTTCAGGCGGAGATGTTGAGGGCAGAGTGTAACTTGTTGAG GATGGAGAAGGAGATTGCGGTCAAGAAGTTGGAGAGGACTCGTGCAAAGATGGAGAGGATTCTAAGATCTGCAGTTCGCA CCCTTGTTTCTGTTAGTGCCTCTCTTTTCTTTTTTTCCAATTTGGAATTTCATTCTCCAACATTTCATATTCTCTTCTCC AATTGCTTTGATCAAATTGAATCACATTTTTTCATGATGAATGCTGAGGAAAAGTAAAATGCTTTCATTGGAAAGTAGTC CATATTTTATCATTACTAACACATGATTGAATGTTGTAATTTTCAATAGAAATTTTCTTATTCTCAATTAAGCTAAGGCT CTGGTTATCATGAAATTTTTGTTTACTTGAATAAACTTTTAGGGGTGTTTCATAATTTAGCTCCAAGGAATGTCTATATT GGAACGTTTTTATGATTTGTTTGTCTATGATTATGCTATGGTGAGTAACTTCTTCCTTTTCTTTGATTTTCTTAGCTAAT TATTCTCATAGCTTGTGCATGATGAATCGGCCGAATTCTTATGATTTGGCTCTAAGGAATATCTTATTTGAATGTTTTTT ATGATTTGTTTGTCTAAATTTCAAGGGGTGTTTTTGAATTTATCTCTAAGGAATGCCCATTTAAATGTTTTTTTATGATT TGTTTGTCTATGATCATGTTATGTTGCAATTGTAAGGTTGATTGCCCAAAATTTTGAAAGTAGGCTACATATTTTATAGC AGTATCTTCTTCCTTTTCTTTGATTTTGTGAGCTATTAAATCGTTATTCTCACAGCTGGTGCATTTGAACTGGCTTAGTT CTGTTTCAAGTTGCTAATAATTGTTGTAACTTGTAAACATAATATTTTTCAATGATTTTACTTGGCTTGTCTTCTTGTAA GACTCTGTTCTGTTTAACATGATGATTTGCATTGCCTGATCTTTAACTTGCAAAGTGGAATTGCAGGGAAGAATAAAGAT TTGTGAAGGAAAGAATATTAATATGGTTTTGGATGAAGAGATTCATGCCTTGACAGAGAAACTTCAGAAGTTGCAGAAGC GATCGTTAGTTAAGGACTTTGAGACTAGGAACAGCAGAAACTTTGACAAACAAGTTTCTGTTCTGCAGAGACGACTGGAG AGGATTGGAGGACCATCAGATGAGATTTATTTGAGAGAGTTTGAAGAGCTGGCAAATGTGAGCTTGTCAATTAAAACAAG TAGCAGATTTGATGATAGCATTGTTGCAAGTGGAAAACTAAATGTAAGTAAACTAAGTAACCCCCATGTTTTGCCTTAGT GCTTTGGTTACTATCCATCTTGAGTTTTGACTACCCTGTACCTTTAGCATTTCTTATCGATTTGATTGCCAATAAGCTAT TCTATTTATGTTTTTCAAGAGCATGTATGCTTTAGTGCGTGTTTGGATCAGGGTTTTCAGAATTGATTTTGCAATTTCGC TAAAATTGATTACGGAAGAAGTGAGTTGAAAATGAAGTGATTTATGTTTGGATTCAGTTATGAAAAATGAGACTCTTGTA GGGTATGTTGCGAAATCCAGTTGTGAAATCTCAAAATTGATTATGTTCAAAACTACTCTCTCTTGCTTCCACCAGAATTG ATTCTAGAACTGGAATCAAATTTAGCTTCTAAAAACCTCAGAATCACAATTCACGTATGACATGCACAAGCTACTATTTA GAGCTTATAAAATACACGACTCTCACGCACACGTGATTTTCGCTAAGATCAGTTTGATTGCCAATAATGTAGATGTTTAT GTGATGTTTTGTATTTTCTGTTTTTAGTTTCCTCTGTGTTCATTTCTCATGTATTTCATTAAAATTTACAGGTGGAAATT CTGAGAAGGAAAATGGAGGGATTGTCAAAGGGGATATTGTTACAGAGAATGGAGGAAGAGTATAATTCTCTGTTGTCCAC TGCTAATAGTTCTGTTACCAGTTCTGCTTCAACTTCCAAGAGAGTTGAATTTCAAGATTCATCTTCTTCAATACGAGTAC CTCATCAGGCAAATTCTTGATTTCTTTGCTCATCACTTGTAGGGTTGTTAACATTTTGTTTTTATCGTATACATCCAATG TTTTCGGTTGGCTACAATAAAGCCACCCCTAATAAGAAAATGTAGACATGAATTGATTCGACTTCCTTATTGCACTAATT CTTGTAAGGCTGAGAAAAAAATGCACAGTGTTAACCTTTTTCATGTAAAACATATTTTTCTTGACTAACTGAATTAGATG AATGAATTCTTACCAAAATCACATTGTCAAATCCTGCAGGAAAAGTTGTCTTATGAAGGGAACCCGTGTTCCGGACATTG CAAGTCAGTTGTACGAAGAATCGTAGAGCAAGTTAGAACTGAGACTGAGCAATGGTCCCAAATGCAGGAGATGCTTGGTC AGGTGAGGGAGGAGATGGAGGAATTGCAAGCTTCTAGGGATTTTTGGGAAGATCGGGCCCTGCATTCCGATTTTCAAATC CAATCCCTACACAATTCTGTAAGATACAGTTCGTTGTTGCCTGTTCTATATTTCCCATTTTATCTGCAATAATCAATATA TTGCCATATAAACTATAGAATAATTATACAATATATGCAGTTATTCAGAGTTTAAAATGTGATTACATATTGCTGATGAC ATTTCTAGTGTATCACTGGCTTTGTGTGAGGATATCATGTGACAAAAATAAATTCTAAAATTGAGTTTTTATCAGATAAA GCATGAGGTGGTGCTTCTTGGCATTTATCTTCTGATTTCTTTTACAGTTGCAAGAATGGAGACAAAGAGCGCTTTCATTT GAAAGTGAAAAGAATGAGCTTAGAGCAAAACTGTCCATGCTCAGTGGTGATCTTGAAAGGTTAAGAAAGGAACAAAATTC AGTTCAGGGGTCCAAATGTTCATCGATTCCCTTGGACACACAGAATGAGTTCGAGAAGCGTGTAGTGGTTTGTTGCTCAA AAGAGAACAATAGCATAGTTACAGAAAATAGCAAGCATAATGAGGGTATGAGGAATGGGGAAAGAAAGGCACATGCTGGT AGAGGTGGATTCCAAGCTCCAAAACGATCACCATTCCAAGACATTGGGAACTCATCATTGTTGATGAAGCAGAATGGTGG CAAAGCAATTTTCCCTTTGCATTGCCATCTTTCTTCAAATGTTGAGAAATTTTACTCATGACTCACTAACTCAGCACTTG AATGCAGGAGATGTCAGTTCTAACATAATCCGTGCTTATTCTGACATAACCAGGAGAAGAAGGTGCACAATGATTGGGGT TTAATGCTTTAAGATATGTGGTTTGAAATTTGTCATGTAATATGTAGAATGCCCAGAGGAATAAGGCAATGTGTTTTTGA ATTTCTGATACTTTCACTTAAAAGAACTTTAATTTCAATCCATGGATTTATGTTAAATGTGCTTTTAAGCTTTGCTAATG GAAATTCAAACACAAGAAATTGGAGTTTTTGTTTCACAAATAT
CDS sequence (LotjaGi3g1v0537200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACAGCACCACCACCATCAAGAAGACCCAAATGGCACCACCACCCACCTCCTCCTCCCACACCCAGAATCCTTCA CTTCCCTCGCCGCCCTCGCCGGAGACCCTCCTCCTCCGCCGCCCGAACGGACCTTAAATGGAACAGGTTGGGAGCTTTGT TTGATCGAGAGAAACGGGTACCTGATCATAAGAATGTTCCGATAGTGCTGTTGGACCATGGTGGTGGTGAGGGGAGAAGG GAGAGAGTTGAGAGCAGCGAATGCGGTGGTGGGTCGGCGTTGGAGGAAGAGAAGTGGAAGTTTCAGGCGGAGATGTTGAG GGCAGAGTGTAACTTGTTGAGGATGGAGAAGGAGATTGCGGTCAAGAAGTTGGAGAGGACTCGTGCAAAGATGGAGAGGA TTCTAAGATCTGCAGTTCGCACCCTTGTTTCTGGAAGAATAAAGATTTGTGAAGGAAAGAATATTAATATGGTTTTGGAT GAAGAGATTCATGCCTTGACAGAGAAACTTCAGAAGTTGCAGAAGCGATCGTTAGTTAAGGACTTTGAGACTAGGAACAG CAGAAACTTTGACAAACAAGTTTCTGTTCTGCAGAGACGACTGGAGAGGATTGGAGGACCATCAGATGAGATTTATTTGA GAGAGTTTGAAGAGCTGGCAAATGTGAGCTTGTCAATTAAAACAAGTAGCAGATTTGATGATAGCATTGTTGCAAGTGGA AAACTAAATGTGGAAATTCTGAGAAGGAAAATGGAGGGATTGTCAAAGGGGATATTGTTACAGAGAATGGAGGAAGAGTA TAATTCTCTGTTGTCCACTGCTAATAGTTCTGTTACCAGTTCTGCTTCAACTTCCAAGAGAGTTGAATTTCAAGATTCAT CTTCTTCAATACGAGTACCTCATCAGGAAAAGTTGTCTTATGAAGGGAACCCGTGTTCCGGACATTGCAAGTCAGTTGTA CGAAGAATCGTAGAGCAAGTTAGAACTGAGACTGAGCAATGGTCCCAAATGCAGGAGATGCTTGGTCAGGTGAGGGAGGA GATGGAGGAATTGCAAGCTTCTAGGGATTTTTGGGAAGATCGGGCCCTGCATTCCGATTTTCAAATCCAATCCCTACACA ATTCTTTGCAAGAATGGAGACAAAGAGCGCTTTCATTTGAAAGTGAAAAGAATGAGCTTAGAGCAAAACTGTCCATGCTC AGTGGTGATCTTGAAAGGTTAAGAAAGGAACAAAATTCAGTTCAGGGGTCCAAATGTTCATCGATTCCCTTGGACACACA GAATGAGTTCGAGAAGCGTGTAGTGGTTTGTTGCTCAAAAGAGAACAATAGCATAGTTACAGAAAATAGCAAGCATAATG AGGGTATGAGGAATGGGGAAAGAAAGGCACATGCTGGTAGAGGTGGATTCCAAGCTCCAAAACGATCACCATTCCAAGAC ATTGGGAACTCATCATTGTTGATGAAGCAGAATGGTGGCAAAGCAATTTTCCCTTTGCATTGCCATCTTTCTTCAAATGT TGAGAAATTTTACTCATGA
Protein sequence (LotjaGi3g1v0537200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTAPPPSRRPKWHHHPPPPPTPRILHFPRRPRRRPSSSAARTDLKWNRLGALFDREKRVPDHKNVPIVLLDHGGGEGRR ERVESSECGGGSALEEEKWKFQAEMLRAECNLLRMEKEIAVKKLERTRAKMERILRSAVRTLVSGRIKICEGKNINMVLD EEIHALTEKLQKLQKRSLVKDFETRNSRNFDKQVSVLQRRLERIGGPSDEIYLREFEELANVSLSIKTSSRFDDSIVASG KLNVEILRRKMEGLSKGILLQRMEEEYNSLLSTANSSVTSSASTSKRVEFQDSSSSIRVPHQEKLSYEGNPCSGHCKSVV RRIVEQVRTETEQWSQMQEMLGQVREEMEELQASRDFWEDRALHSDFQIQSLHNSLQEWRQRALSFESEKNELRAKLSML SGDLERLRKEQNSVQGSKCSSIPLDTQNEFEKRVVVCCSKENNSIVTENSKHNEGMRNGERKAHAGRGGFQAPKRSPFQD IGNSSLLMKQNGGKAIFPLHCHLSSNVEKFYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 42 | 42 | - | – | |
| PANTHER | 8 | 491 | 484 | 5.3E-182 | – | |
| Coils | 114 | 141 | 28 | - | – | |
| Coils | 156 | 176 | 21 | - | – | |
| SUPERFAMILY | 325 | 415 | 91 | 6.21E-5 | – | |
| Coils | 341 | 361 | 21 | - | – | |
| Coils | 376 | 410 | 35 | - | – | |
| MobiDBLite | 449 | 478 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0537200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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