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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0537400 |
| Transcript ID | LotjaGi3g1v0537400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome maturation factor UMP1 family protein; TAIR: AT1G67250.1 Proteasome maturation factor UMP1; Swiss-Prot: sp|Q0DWQ7|CCB12_ORYSJ Cyclin-B1-2; TrEMBL-Plants: tr|I3SXF4|I3SXF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0537400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95413015..95416700) extracted from Lotus japonicus Gifu genome v1.2.
AAATCATTAGCGTAAATGCGAAAATAGTTGTTAGCAAATAATAAAACAATTAAATAAAACCCCTTTATATATAGATTATT ATCACATTTACTTGCTAGTTGCTATTGTAGTGTGTGTGTTGGTGACTCGAGAAAGAGAAAGACAAGAAGAAAAGAGAAGA GAAGATCGTAAGGTAGAAGAAGATGGAAGAAGCTTCAAAGACCATTCCACACCAAATCGGAGGTGTCCACAACGATTTGC TCCGCTTTGGAATCCATGGAGTCAAGAGCGACATCGTTGGTGCTCACCCTCTCGAATCTTCCCTCGCATCTGTAATCTCT CTCTCTCGCTTGTTCTCAGTTTCAATTTCTGCACTTCCTGCGTTTTTCTGATCTGATATATGCAATGCTTCTGTAACTGC TTTATCGAATTTCATCTGTTAGCTATTTTCCCTCTGAATTAGGGTTTAAAGAATGAAAAAAGCAAGATAACCTAAATTTC AATTTCAATTTCAATTTCAATTGAATCAAACAAACCCTATGTTTCTCTCGTTTGGTTTTTGAAGTATAATTGGCAATTCT TTTGTTAATTTCAGGCTAGGAGCACGGAAGAAGCGATGAAGAGGCAGTGCAAAGTCAACTTGTATGGAGCTGCTTTTCCA CTCAAGGAGGAACTTGACAGGCAAATTCTGTCTCGGTACGCGTCTTTTTTCCTTTTTACTGGAATGATCTGTTAATAGTC TAACTGACATTGAATGATTCAATTTCACAACTCATAACTATTTCAGTGACAATTTGTCCTAATGAACTTTGTTTGAGCCT GGTGTGAATGATTAACTTTGTATAGTAGGAATTTTAGACACAGATCTAGATTTCATAGGGGAATGGCATAAGAATGTTAA CAAAAAATGTGTTTGTCCTGTGAATATGAAAGTGATTATTAGTATGTGAGCGAGAGTGACTCACATTACCATATTGGTTA GCTCGAGTGGTTATGTCAGGTGGAAAGCACTTTGGCTCTTGGTAGAGATTCAAGTTTTGTAGGATCAAATAAATTGCTTC AATATGTTTTTATTAAGAAGGGTGAAAGGGGTTTGAGTTTGTTTGACGTATATGCTACTGTTCCATGTAGGTTCCAGAGG CCTCGCGGGGCAATTCCATCTTCAATGCTGGGTTTGGAGATTGTTACTGGAAGCCTTGATCACTTTGGTTTTGAGGATTG TCTTAATGGTGAGTTGATTTGCCTTTCATTTTCAAATTGTTGGTAGTGCTTATTTATTACCTATTTTGTTTTTCTTTTAT AAAGTGGATTAGCTGCATCATGTGTGAAGTTGCATATAGTTAGAGGACTTACTGTTGAACTTTGAAACGTTTGGTTTCTA CTTAAGTAGTGCATCCTGCATGATATATTAATTTTATGCTTCATTAACATGAAATGTTGAAATAACTATGCTTCCTTTTC ATTGAACATGATCTGTACAAGTAGTCCAGTAGTGGTGAGTCCATGGCATAGCTTGAGTTTGTCTATGTTTTCAATTGTTT TCCTGATTGAATAACTTGTTGGATCATCTTGGACCTTTTCTTTTGCCTAAATAAGATTTGAAATGAACTTATGCTCTGAA CCTTAAACCATTATTTTCAACTGTTTAGGATGGGCTAAGTTGTTTTTGGGTATATGCAATTAAGTCACTTCCTGTTTTGA GATAATTGCAGTCTTGTGAATTGACTTTGACTATGTCTTTTTTTGTTTATTTTAATTTTTTATAATGGGTACATACTGAC ATGCCGTTATATTCTATTTTGTTTTGAGATGATTGCAAAGGTTGTGGCAACCTGCGTGACACTTTGAATGATCTATCTAG GTTTAGGGATCTAAGGAGTAATGTATACTAAAGTCTGTAAAGTTGAATCAGAATTATTTAGAATCTGCGTTGTTATTGAA ATTTTACAGTCTTAAGATTTGATTTGCATTGTAATTTAAACATGATACTCTGAGATAGATGCTAGTTGTATCCACCAGCG GTAGTGTTTTAAGCTTTGCAACATTATTTTTAACCACCAAAAGAAGTTAGATACACAGCCATTTTGGAATAAACTTCTTA ACACAAACTTGTAGAGTTAAAAGTTAAAATGGTATTGGAGGAATTATGTGTCTTGTAATAATAGTTTCCCACATAAGTTA ATATCATCTTCACATAACTTATTTAGAAGCTCCTTCATTTAACTTCTCTATAAGCACCTATAAACTTGTAAGTGATTTTT TGTAGATGGGAATCAAATACTTATCTCCGTTGAAAAGTTTCTCATAAGCTTAAAGCTAATCCATACTGAGCCATAGTCCA CTCAATAGCATACTTTTTTTTTTAACTTTCACTTCTGTTGTAATTGTGATTATTGGCATATGGAACGCTGTTGTTGGCTT GTTGCTGGCACTTCCCTCAGTTTCTCTTTTAATGTTAATGTTGCTTGCAGACCCTCGTGAATCAGAGACTTCACTGCCAG TGGACATGCATCATGGGATGGAAGTTCGTCTTGGTCTATCTAAAGGACCAGTGTACCCAAGTATTGTATAATTCAGTTTC ACTGTTATTCTAGTACCAAAAATATGAGAGTAATTTTTAATTGAAGCTTCTCGTTATTGATTAGAAGGAAAGTGTCCAAG GAACATGCAAGTTTATTCATAGACTTATGTTTTCCTCATAACATATTTGAATCAGTTTGTTTTTCCCAGAAATTACTCAC AGAAGCTTTTCCCCTGAACTGATTACGATTTTAGACTTAGTTGAAAAAGGATTTCTTATCATGATGGTCCAATCAAATGC AGCCTATCTTTCAAAAGTAAAACTGAATATTTATGTGTTTGAGGCATTTGAGTTGAGCATCTGTTTACTTTTAGCATATC TCGCCTTTTTAACTGACTGTTGAGCAATCATGCTTTCAATCGCTTATTGCCGTTGTGTTCAAAGAAATGGTAGCTACATC TTATTGGGTTGTTTTTTAAAGAGATAGTTAGATTCCTGCTGTTGAATTCTTAAAGAGATAGTTAGATTCCCAGAAAGATC AGATTACTGCTGTTGAATTCTTAAGCATGAGTCGGAACGAGTTTTTGTGTTGAACCATATTTGATATCCATAGATGTTTG ATGTTTGAAAAGCCTTTAGATTTTCATTTTTGAGAGAAGTGATTTTTGAGAGGTTTAACTATGAATGTAAACATACTGTA AGAATATATATTGTGCCTGGTGGATGGTCATGATCTCTGCACTGCCTCATCCAATAGATCAATTACATTAGGAAAAAAGG CTGATATAAAGGGTTTGATCATACTGGTGGAGGAATTATTAGTTAAAAATGGACTATCCTCTTTATTACTAGACGAATTA CAAGAAATAAAATTTCTTCAGCCCTCTTTCATGAAGGATTTCGGACTCTTTGCTTTAATTTTCCATGGTTTTAAATCTTT AAAATTGCAACTTAGTCCTTTATTGTCTAAAAGTAATCTGCAAGATACTTTTTTTTTGGTCAATAATTGCAAGATACTAA ACTCTCTCATTTTCAGAAAATACTAGAGCAGTGCTCATTAGGGATGATAATGGGTTTACCCGCAAAAAATACCCACTATG GGTAGGGTAAAAACCCGCTAGATGGGTATGGGGTTGGGTATGGGTTATTACCCGTAAAAAGTATTGGGTATGGGTGCAGG TATGGG
CDS sequence (LotjaGi3g1v0537400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGCTTCAAAGACCATTCCACACCAAATCGGAGGTGTCCACAACGATTTGCTCCGCTTTGGAATCCATGGAGT CAAGAGCGACATCGTTGGTGCTCACCCTCTCGAATCTTCCCTCGCATCTGCTAGGAGCACGGAAGAAGCGATGAAGAGGC AGTGCAAAGTCAACTTGTATGGAGCTGCTTTTCCACTCAAGGAGGAACTTGACAGGCAAATTCTGTCTCGGTTCCAGAGG CCTCGCGGGGCAATTCCATCTTCAATGCTGGGTTTGGAGATTGTTACTGGAAGCCTTGATCACTTTGGTTTTGAGGATTG TCTTAATGACCCTCGTGAATCAGAGACTTCACTGCCAGTGGACATGCATCATGGGATGGAAGTTCGTCTTGGTCTATCTA AAGGACCAGTGTACCCAAGTATTGTATAA
Protein sequence (LotjaGi3g1v0537400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEASKTIPHQIGGVHNDLLRFGIHGVKSDIVGAHPLESSLASARSTEEAMKRQCKVNLYGAAFPLKEELDRQILSRFQR PRGAIPSSMLGLEIVTGSLDHFGFEDCLNDPRESETSLPVDMHHGMEVRLGLSKGPVYPSIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 131 | 129 | 3.7E-53 | – | |
| PANTHER | 3 | 131 | 129 | 3.7E-53 | ||
| Pfam | 16 | 130 | 115 | 9.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteasome assembly | The aggregation, arrangement and bonding together of a mature, active proteasome complex. |
Expression pattern of LotjaGi3g1v0537400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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