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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0538700 |
| Transcript ID | LotjaGi3g1v0538700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT3G11290.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|I3SWC9|I3SWC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0538700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95547310..95551257) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATTCTTTTTGTGAGCAAAACCTTATCTCATTCGTTCATTGTTTTAGATTCTGCTCCAGCCCGAAGTTTAGAGAAAT CCTCAAGCTCCATAACCAGGTATAAGCTTTTTCCTTTCAATTTTTCTTTACCGTGCTTTTTGCCTTTCATGACCAGATGC TGAGATGTTGTTCCTAGTCTGAATGGTTTCTCCATTTTTCTATATCCACCACTATGGATGTTTCTTTCTCTTGCAATCAA TCGAACTTGGATCATTGGTATTATTTTTTATTACAACCATATCAATCAAGAATCCAATATTGTGTATCTCTTCCTATCTG ATGTTTATTATTATTTTTTTCATGAATTGGTTTCTCCCTTTTCTATTATCTTTTTATTGTCATCAATCTGATCTGATGTT TATAACCATCTAATCTCCCTTTTTATTTTTGTTATCTGTTTCCTTTTGATGTATTTGTAAAGAACAAGTGGTGACAAAGA AAGTTGTCTTCACGGTAATATTTTTTTAAAGAAGGAACATTTTCAATTTGGTAAGGAGTTTTCAATTTAGTAGAGAACCT TTTTGATCTATCAGATTCTATTAGTCCTATTATTTGGTCTTTATTATTTCAATTTGGCAAAGACTTTTCTAGCTTAGAGG AAGTTTTATTTCCTTTGATAAGGGATGTTTATTAGCCACAATTTCCCCTACAAATGGTACAAGTATATGTATCAGACTTA AACTATTGATCTTGCATCTTTTGTATATTATTTTCTATCTTTGTATCTTGGGACTATAAGGGCAAAGTCATGAATGATCT TAACCATGAAGATGACATAGAGGACACCATGGATGAAAATGATCTACTTCAGTCCCAAGTTACATAAATCACAAATGTTG AATTAGGGATAGACATGCAAATTTTGACTTATGTTAGACAACAATTAGAATGTAGGCAATGTCTCTGTTCTGTAGTTTTA TTGTACTATATGGTCCATGCTTTGCATATGTTGGAAATGATGTCAAGATACATGCATAGTTCGTTTATGGAGAGAATTTC TGAAAGAGAGACTAGGCGTTCCCAACTAATGAGGCAATTAGTAGAATCAGAAAGAAGTAGAGATATCATCGCATGAGTCC TCAAGCATTTATGTACTTGTGTCAAAAATTAAGATGTACTGGTAGGGTGAAGGATTCAACACGAGCTATTGTGGAGGAGC AAGTGGCTAAGTTCTTGCACATTATAGGTCATAATGTGAAAAATCGAACTGTGTCTTTCTTTTTTCATCGATCCGATGAG ACAGTTAGTCGCCACTTTCACAATGTTTTGCGGGCTATAATATCATTGCATGATGAATTTCTGGTCCAACCTTCTGGGGT AGAGGTGCATCCTCAAATACTTAACAATAGTAGGTTTTATCCTTATTTTAAGGTAACAACTTTTCTCTTCATATTCGTGT AAATGCATTGTAGCCCTTTAATCTTTTATTAACTTATATTTCTAACATATAAATATTGCTTTTAAAAAGGATTCTATAGG ATCCATAGATGGAACACATATTCGAGTGATGGTTCCTAGGGCACAAGCACCTCGATTTCGTGGCCGAAAAGACTACCCAA CCCAAAATGTCCTTGCTGCATGTGATTTTGATATGAAATTTACATATGTCTTAGCTGGGTGGGAAGGAACGACATCTGAC TCTAGGATTTTAAAAGATGCTTTAACTAGAGAAGATCCACTAAGAATTCATGAAGGTTTGTGGTTGTTTGATATTGATCG ATACTATAGTCAAAAGTACAATATAGAATATCAACACGTCATATGTTCATTATAATTTTTGTAGGAAAATTTTATATTGG GGATGCGGAATATATGCTAAAACGTGGTCTCCTCACACCATACAGAGGTGTCAAGTATCACCTGAAGGAGTATTCAGCTC GTGGGCCACAAAATTATAGAGAGTTATTCAACCTTCGACATTCTTCTCTTCGGAATCTTATTGAAAGAACTTTTAGAGTT CTTAAGAAAAGGTTTCCTATAATATCTAGTGGCACTGAAGCTCATTATTCCGTTGACATAATGACAGACATAATACTTGC TTGTTGCATTTTGCATAACTTTTTGATGGAAGTCGATGTTGACGAGCAGCTAATTGCGGAGGTAGATCGCGAGTTACAAT AGAATGAAATGGATACATCCTTTGGTCAAGTGCGAGATGAGGACTATAGACAAGGAGCACTATTAAGAGATAATATATTG CTATTGAGATGTGGAACATGTACCACCTCAATTAGCTAATATTTTATAAATTCTAGTTAATCTACATGGTTTTAGTTCTA TGTTATGTATGTTCTGAATATTTATACTTAAGTTAATTTATGACAGTTGTTCCATTTGTTGTTGATTATTTACACATTGT TATTTGGATAACCTTTGTTACTTACATTTTCACGTAATTTTTTTTATGATAATTATTATTGTCATAAACTTGTTTTGTAT GTATTTTAAAAATCACCTAGCTTTCACAATGGCAAGAATATGGAATACTTCAACGAACCCCACACAACAGCCTAGAGAAA ATCTTAGATGGAATGATCATGAGATGGATATTGCTTTGCTTCATGCACTGAGTGAAGAGGCAGCACGTGGAAATAGATCT GATGGACAATGGACTACCGAAGCATATGCAAATGTGGTTGAGTCATTGAGGTCATTAACTGGTCCACACATAACAAAGGA TAATGTAAAAAATCGGATGAAGTCACTGAAAGATCGTTGGAAAAATGCTTTTGACATGTTCAATGGGTTGAGTGGATTTG CTTGGAATCCCATAACTAGAAAATTTGACGCTAAGGAACAAGTTTGGGAAGAGTTAATCAAAGTAAGCACACATTCATTA AACTTTTTATTTATAGTTCTATCTTATATATGAAGTTCTACTGACCTTGTCTTATATATTAATCAGGCTAATTCTAATGC TGCTAAGTTTAAGGATGCCCAAACACTATGACATGATGAAAGAGCTATTTGGTGCTGACAGGGCAACTGGGAAACATGCC ATGACTGCAAGGGAGAAGATGAAGCAATTGGAAAAGGAGAAGGACTGTGCTAACCTTAATGATAATTCTGATGATTTAGG CATGAATGAGGCAAATTTTAGTATGTTTGATGAGATCCTCATTCAATCGCCAAATGTGGAGTCCTTCAGCCCTTCTGATG TTCCATCACATCAATCAACTGGGACTTCGGGGTCTAGGGGAACAAAACGCAAAGCTAGTATTGCGGAGGTTATGGAGACC CAATATGAAAGAGTCTCTATAGGCATCAATGCTTTGTCTGAGGCAGTTAAGGATGGGAATCAACTGTCTAGTAAGCTACA TGAAGTGGCTGAGAGACAAGTGGTTGTAGCTGAGAGGCATGTGGCTATTGCTGAGAAGCAAGCTATTTTTGTTCAGAAGC AACTTGAAATAGCAGAAAAAGGCTTAACTATTATGCAGCAAAGCAAGCCACGCCTCTATACTGAAAGTGATGTTTGGGAG TTGCTGACATTATTAGGTGTAAATAGTGGATATAAGAGAAAGTGTTACCGTTTTCTGTGTTCAAATGAACAAAAAGATCG AGAACTATTTGGGGTTCCTCCTGATGTGCAAGTTGTGACTTTGCTAGAAATGATGCAAAGAAGAGGGAATCATGTGAAGA GGGCTTTGGGATGAATAGTAGTAGCATTTTTTGGCAGGGCTATATGTATCTTTTTTGGAACCCTTATAACCAATGGTATG CTTATATGTATTTTGAAGAACTGGCTATGCATATGATATATGTATAACACTGTCTTGTATTTTGAGGGGTAGCTGTAAAG TGACTAAAGTCTCTTTCAACTAGGATGTGTGTATATGTATTTTCAAGAACTGGCCACTATATGTAGGTATTTCAAAATAT GTATGGATTATGTCTGTATTTTATAATT
CDS sequence (LotjaGi3g1v0538700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATTATTATTGTCATAAACTTGTTTTGTATGTATTTTAAAAATCACCTAGCTTTCACAATGGCAAGAATATGGAA TACTTCAACGAACCCCACACAACAGCCTAGAGAAAATCTTAGATGGAATGATCATGAGATGGATATTGCTTTGCTTCATG CACTGAGTGAAGAGGCAGCACGTGGAAATAGATCTGATGGACAATGGACTACCGAAGCATATGCAAATGTGGTTGAGTCA TTGAGGTCATTAACTGGTCCACACATAACAAAGGATAATGTAAAAAATCGGATGAAGTCACTGAAAGATCGTTGGAAAAA TGCTTTTGACATGTTCAATGGGTTGAGTGGATTTGCTTGGAATCCCATAACTAGAAAATTTGACGCTAAGGAACAAGTTT GGGAAGAGTTAATCAAAGCTAATTCTAATGCTGCTAAGTTTAAGGATGCCCAAACACTATGA
Protein sequence (LotjaGi3g1v0538700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIIIVINLFCMYFKNHLAFTMARIWNTSTNPTQQPRENLRWNDHEMDIALLHALSEEAARGNRSDGQWTTEAYANVVES LRSLTGPHITKDNVKNRMKSLKDRWKNAFDMFNGLSGFAWNPITRKFDAKEQVWEELIKANSNAAKFKDAQTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 24 | 151 | 128 | 9.3E-50 | – | |
| PANTHER | 24 | 151 | 128 | 9.3E-50 | – | |
| Pfam | 42 | 136 | 95 | 1.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0538700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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