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LotjaGi3g1v0540000.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0540000
Transcript ID	LotjaGi3g1v0540000.1
Lotus japonicus genome version	Gifu v1.2
Description	AIG2-like (Avirulence induced gene) family protein; TAIR: AT3G02910.1 AIG2-like (avirulence induced gene) family protein; Swiss-Prot: sp\|Q9M8T3\|Y2910_ARATH Putative gamma-glutamylcyclotransferase At3g02910; TrEMBL-Plants: tr\|I1LP52\|I1LP52_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0540000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:95730442..95731798) extracted from Lotus japonicus Gifu genome v1.2.

GTTTATATAAAAAAAATATAAAATTAAAAAATGGGGAAGAAAACAAAAAAAAAAAAAAGGTCACGAATTATACACGTAGA AATTAGAATCCCACTATAAAAAGGTGACTCACATTCCCCATTTTCATAGCCACTCATTCATTCAATAAAATAACTTCCTC TTCTTCTTCCTTCTCCTTCATTCTCTCTGTGTGATTCCAATTCCATGCCCAAATCCCTAATCCCCAAACAATGGTAGCGG GGAGAGACATCGCCGTCAACGCCGTCATTGACGCCGGCGACAGAGCCCTCATTTTCACCTACGGAACCTTGAAACGCAAC TTCTCCAACCACCCCCTCCTCCAGGATCTCATGCGCACCGGCGACGCCACCTTCATCGGACCCTACCGAACCGCCGCAAA CTACCCTCTCGTCTGTGGTCCCTACAAGGTCCCCTTCCTCCTCAACCTCCCGGGGTCAGGTCAACCGGTCCACGGCGAGC TCTACTCAGTCTCCGCCCGCGGCCTCGCCCGCATGGACGATCTTGAAGGAATTGACCGCAACCACTACGAGCGTCTCCCA ATCAGGCTCCTCCCTGCCGGAGGCGAGGAAGTGGCCGCGGCGGAGGCGGAGGTGGAGGCGTACTTCGCCCACCGGAGCTA CGCGATGGAGATGTGGAAGAAGAACGGGAAGAGAGGGTTGAGGTGTTATTCAGAGAAAGAGACGATTGGGTATGTGAAGC GCAAAGATAGGCCTCAGAATCTCACGTTCCTCGATCACATTCGGAACTTCCTCTCTGATTGAACATTTCAATCACTGTGT GTTGTTGTTTGTTTCTCTGTTTTCAATTCACAGAGAAGCTGTTGTGTGTTGAATGAAAAAGTTGAAAATCCAAACACACA CTACAATATACAAGTACAACCCTCTTTGTTGATGTTTGGTGAGACTGAGAGATGGAGATTTTGTTGAAAATTCAGAGTGG TTGGTTAGCACAATTGCAAGTTCCTTTTTTATTGTGTTGTACCTTTAATTTACCAAATGGGAAAAAAATCAGTACTTGTT ATCTTTCTCTATAATGTTTCTGTAAATTAGTATTACTATATCACTTTCAATTTGAAGATATAAGTCCTATCTTGTAGTGA ATATTTGTGCAAATTGTGAAACTAAACATTAGTGTGTTATCCACGAAAGGGTTGTCAATAGTGTGCTATAGCGTTGTAGC GGTTGTTGCGTCTGCTAAAGCAGAGAAATAGCAGCCATAGGGGCGATATTTGGCTGCTAAATGGTGGATTGATGTAAGCA CAAAAATAACCCACAAAAAGTTCATTTAAGGCATTTTGTGGAGGTATTTCAGAGTTTTTCTTGGGAAACATACTGAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0540000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAGCGGGGAGAGACATCGCCGTCAACGCCGTCATTGACGCCGGCGACAGAGCCCTCATTTTCACCTACGGAACCTT GAAACGCAACTTCTCCAACCACCCCCTCCTCCAGGATCTCATGCGCACCGGCGACGCCACCTTCATCGGACCCTACCGAA CCGCCGCAAACTACCCTCTCGTCTGTGGTCCCTACAAGGTCCCCTTCCTCCTCAACCTCCCGGGGTCAGGTCAACCGGTC CACGGCGAGCTCTACTCAGTCTCCGCCCGCGGCCTCGCCCGCATGGACGATCTTGAAGGAATTGACCGCAACCACTACGA GCGTCTCCCAATCAGGCTCCTCCCTGCCGGAGGCGAGGAAGTGGCCGCGGCGGAGGCGGAGGTGGAGGCGTACTTCGCCC ACCGGAGCTACGCGATGGAGATGTGGAAGAAGAACGGGAAGAGAGGGTTGAGGTGTTATTCAGAGAAAGAGACGATTGGG TATGTGAAGCGCAAAGATAGGCCTCAGAATCTCACGTTCCTCGATCACATTCGGAACTTCCTCTCTGATTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0540000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAGRDIAVNAVIDAGDRALIFTYGTLKRNFSNHPLLQDLMRTGDATFIGPYRTAANYPLVCGPYKVPFLLNLPGSGQPV HGELYSVSARGLARMDDLEGIDRNHYERLPIRLLPAGGEEVAAAEAEVEAYFAHRSYAMEMWKKNGKRGLRCYSEKETIG YVKRKDRPQNLTFLDHIRNFLSD

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12510:SF15 View details on PTHR12510:SF15 Search for proteins/transripts with this domain View external data on PTHR12510:SF15	15	182	168	9.1E-65	–
PANTHER	PTHR12510 View details on PTHR12510 Search for proteins/transripts with this domain View external data on PTHR12510	15	182	168	9.1E-65	IPR039126 Show description in modal box View details on IPR039126 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.10.490.10 View details on G3DSA:3.10.490.10 Search for proteins/transripts with this domain View external data on G3DSA:3.10.490.10	19	167	149	2.2E-35	–
SUPERFAMILY	SSF110857 View details on SSF110857 Search for proteins/transripts with this domain View external data on SSF110857	19	133	115	4.71E-25	IPR036568 Show description in modal box View details on IPR036568 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06094 View details on PF06094 Search for proteins/transripts with this domain View external data on PF06094	21	136	116	4.9E-19	IPR009288 Show description in modal box View details on IPR009288 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd06661 View details on cd06661 Search for proteins/transripts with this domain View external data on cd06661	21	113	93	7.70523E-15	IPR013024 Show description in modal box View details on IPR013024 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0061929 View details of GO:0061929 AmiGO InterPro QuickGO	Molecular function	Gamma-glutamylaminecyclotransferase activity	Catalysis of the reaction: epsilon-(L-gamma-glutamyl)-L-lysine = L-lysine + 5-oxo-L-proline.	Subterm of View details of GO:0016842

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0540000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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