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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0540800 |
Transcript ID | LotjaGi3g1v0540800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | tRNA dimethylallyltransferase; TAIR: AT3G23255.2 tRNA dimethylallyltransferase; Swiss-Prot: sp|A7EGK5|NPL4_SCLS1 Nuclear protein localization protein 4; TrEMBL-Plants: tr|A0A151TM85|A0A151TM85_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0540800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95798479..95800004) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTAATTACCTTATTTGAGCCATGATACTTTAAAAAGATAAAACCAAAGGCACCAGCCTAATACAATTTATAGTGTGA GAAGAGCAGAGTGAAAGTGATGGTGGAGACATTCTTCTGGAGCGGAAGCAGCCACCTGAAACTGCTTCAACAACACTCCA ATTCCAATCTGCTTCTTCTTTCTGGCCCTCCTTCTTCTGGGAAAACTTCTCTGCTCTTCCAATATGCATTCAATGTAGCT GCAGCAGCCAACTCTTCCAACCCAAATGTCCTCTTCATCTGCAACCGCCAAAGGTTGGATTCCAAACCCCCTTTTCTTTC TCAGGGTATTGACCCATCTTCTGATGTCTTCCACCGCATACAAATGAAGTACGTGAATGATGATGAGGATATTAGGAAGT ACTTTGCTGCCTTCCATCTGCTCGATACATTGCCTGCGGCGGTTGTGATCGATGATTTTGGCGATTTCTTTGACAACAAG TAATTTTGTCTTCTACAGATAACCACCCCTGTTATGTGTTTCTGTTTCATCTTTTGATTTTCAATTCTGATTTGAAAAAG GGTCTGCCAACAACGGTATTCGAATCCCCGCGGACGAGACTTGGCCATGGTTAAGAGTCTAGCATTGTGTCACAACGCAA TTTCTTATGCAAAGTGAGTATGCATTGGTTATTGTTGTTCAGAATATGATTTTGCCATGTTAGATAATATAAAACCATGC ATGAGGCTTCATCCAATAGTTTAAGCTTTTGTGATAGTTGATTCGTGACATGCTAGAGGCAACTGAATTGAGTTAACCAA TGTTTGGATTAACTTCTATTTTTTAAGAATTAATTCTGGCAAACATAAGCTTTTCCCTGATTTGATTTTTGCTTTAGAAT CAACCTAGTATTTTCAAACATGCAATTAGCTGTTTAGCATCCACAACTCACAAAATGGTAAACTTTCTTTCTAAATTCTC TGGCAGTCAAAAAGGGTCTTGCAAGCTTCTCTTATCAGATACTCATACTCACCAGGGGGACTCTCCAAGGTTTCACTTCA TCTATAAGAAATGGATTCACACCACTTTTGCAATTAAAGGTTGGCTCCCTTAGTCCTCAGTGCTTGCGTTTTAAGGAAGG AGTACATACTACTATATGCACTTCAGATTTTTTTGCACTTGTGGATTCCTGCAATGTGCTTTTTCTCTTTGTCATGTATA ATTCCTTATTAGTTGTCATAGTATCTGGTGTTGCAGAAGGGGATGTGTCTGGATCATTTGTTCTGAAAGAAAAGGGCTAT TCACGAGCTGATGATAGAGGTAGGAATCTTAAAGCTGCAAAGTACTCCATAGCTCTTCAATATCTGGTCTATGATGGAAT TGTCAAAGATGAAGTAGAATAGATATTAACCACTTCCACCATTAGAACTGGTTCTGTAACTATGTCATATGTTTTCTTGT TCCATATAACTGCTATACTTAATGATAAACTGAAAACCAGTTTTGCTTCCATCTTCAGTGAATGAAACCTTACGATTATC AGTTCA
CDS sequence (LotjaGi3g1v0540800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGACATTCTTCTGGAGCGGAAGCAGCCACCTGAAACTGCTTCAACAACACTCCAATTCCAATCTGCTTCTTCT TTCTGGCCCTCCTTCTTCTGGGAAAACTTCTCTGCTCTTCCAATATGCATTCAATGTAGCTGCAGCAGCCAACTCTTCCA ACCCAAATGTCCTCTTCATCTGCAACCGCCAAAGGTTGGATTCCAAACCCCCTTTTCTTTCTCAGGGTATTGACCCATCT TCTGATGTCTTCCACCGCATACAAATGAAGTACGTGAATGATGATGAGGATATTAGGAAGTACTTTGCTGCCTTCCATCT GCTCGATACATTGCCTGCGGCGGTTGTGATCGATGATTTTGGCGATTTCTTTGACAACAAGGTCTGCCAACAACGGTATT CGAATCCCCGCGGACGAGACTTGGCCATGGTTAAGAGTCTAGCATTGTGTCACAACGCAATTTCTTATGCAAATCAAAAA GGGTCTTGCAAGCTTCTCTTATCAGATACTCATACTCACCAGGGGGACTCTCCAAGGTTTCACTTCATCTATAAGAAATG GATTCACACCACTTTTGCAATTAAAGGTTGGCTCCCTTAG
Protein sequence (LotjaGi3g1v0540800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVETFFWSGSSHLKLLQQHSNSNLLLLSGPPSSGKTSLLFQYAFNVAAAANSSNPNVLFICNRQRLDSKPPFLSQGIDPS SDVFHRIQMKYVNDDEDIRKYFAAFHLLDTLPAAVVIDDFGDFFDNKVCQQRYSNPRGRDLAMVKSLALCHNAISYANQK GSCKLLLSDTHTHQGDSPRFHFIYKKWIHTTFAIKGWLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 196 | 196 | 1.3E-73 | – | |
Gene3D | 14 | 192 | 179 | 2.4E-9 | – | |
SUPERFAMILY | 21 | 176 | 156 | 2.47E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0540800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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