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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0540800 |
| Transcript ID | LotjaGi3g1v0540800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT3G23255.2 tRNA dimethylallyltransferase; Swiss-Prot: sp|A7EGK5|NPL4_SCLS1 Nuclear protein localization protein 4; TrEMBL-Plants: tr|A0A151TM85|A0A151TM85_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0540800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95798483..95799992) extracted from Lotus japonicus Gifu genome v1.2.
TAATTACCTTATTTGAGCCATGATACTTTAAAAAGATAAAACCAAAGGCACCAGCCTAATACAATTTATAGTGTGAGAAG AGCAGAGTGAAAGTGATGGTGGAGACATTCTTCTGGAGCGGAAGCAGCCACCTGAAACTGCTTCAACAACACTCCAATTC CAATCTGCTTCTTCTTTCTGGCCCTCCTTCTTCTGGGAAAACTTCTCTGCTCTTCCAATATGCATTCAATGTAGCTGCAG CAGCCAACTCTTCCAACCCAAATGTCCTCTTCATCTGCAACCGCCAAAGGTTGGATTCCAAACCCCCTTTTCTTTCTCAG GGTATTGACCCATCTTCTGATGTCTTCCACCGCATACAAATGAAGTACGTGAATGATGATGAGGATATTAGGAAGTACTT TGCTGCCTTCCATCTGCTCGATACATTGCCTGCGGCGGTTGTGATCGATGATTTTGGCGATTTCTTTGACAACAAGTAAT TTTGTCTTCTACAGATAACCACCCCTGTTATGTGTTTCTGTTTCATCTTTTGATTTTCAATTCTGATTTGAAAAAGGGTC TGCCAACAACGGTATTCGAATCCCCGCGGACGAGACTTGGCCATGGTTAAGAGTCTAGCATTGTGTCACAACGCAATTTC TTATGCAAAGTGAGTATGCATTGGTTATTGTTGTTCAGAATATGATTTTGCCATGTTAGATAATATAAAACCATGCATGA GGCTTCATCCAATAGTTTAAGCTTTTGTGATAGTTGATTCGTGACATGCTAGAGGCAACTGAATTGAGTTAACCAATGTT TGGATTAACTTCTATTTTTTAAGAATTAATTCTGGCAAACATAAGCTTTTCCCTGATTTGATTTTTGCTTTAGAATCAAC CTAGTATTTTCAAACATGCAATTAGCTGTTTAGCATCCACAACTCACAAAATGGTAAACTTTCTTTCTAAATTCTCTGGC AGTCAAAAAGGGTCTTGCAAGCTTCTCTTATCAGATACTCATACTCACCAGGGGGACTCTCCAAGGTTTCACTTCATCTA TAAGAAATGGATTCACACCACTTTTGCAATTAAAGGTTGGCTCCCTTAGTCCTCAGTGCTTGCGTTTTAAGGAAGGAGTA CATACTACTATATGCACTTCAGATTTTTTTGCACTTGTGGATTCCTGCAATGTGCTTTTTCTCTTTGTCATGTATAATTC CTTATTAGTTGTCATAGTATCTGGTGTTGCAGAAGGGGATGTGTCTGGATCATTTGTTCTGAAAGAAAAGGGCTATTCAC GAGCTGATGATAGAGGTAGGAATCTTAAAGCTGCAAAGTACTCCATAGCTCTTCAATATCTGGTCTATGATGGAATTGTC AAAGATGAAGTAGAATAGATATTAACCACTTCCACCATTAGAACTGGTTCTGTAACTATGTCATATGTTTTCTTGTTCCA TATAACTGCTATACTTAATGATAAACTGAAAACCAGTTTTGCTTCCATCTTCAGTGAATGAAACCTTACG
CDS sequence (LotjaGi3g1v0540800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGACATTCTTCTGGAGCGGAAGCAGCCACCTGAAACTGCTTCAACAACACTCCAATTCCAATCTGCTTCTTCT TTCTGGCCCTCCTTCTTCTGGGAAAACTTCTCTGCTCTTCCAATATGCATTCAATGTAGCTGCAGCAGCCAACTCTTCCA ACCCAAATGTCCTCTTCATCTGCAACCGCCAAAGGTTGGATTCCAAACCCCCTTTTCTTTCTCAGGGTATTGACCCATCT TCTGATGTCTTCCACCGCATACAAATGAAGTACGTGAATGATGATGAGGATATTAGGAAGTACTTTGCTGCCTTCCATCT GCTCGATACATTGCCTGCGGCGGTTGTGATCGATGATTTTGGCGATTTCTTTGACAACAAGGTCTGCCAACAACGGTATT CGAATCCCCGCGGACGAGACTTGGCCATGGTTAAGAGTCTAGCATTGTGTCACAACGCAATTTCTTATGCAAATCAAAAA GGGTCTTGCAAGCTTCTCTTATCAGATACTCATACTCACCAGGGGGACTCTCCAAGGTTTCACTTCATCTATAAGAAATG GATTCACACCACTTTTGCAATTAAAGTATCTGGTGTTGCAGAAGGGGATGTGTCTGGATCATTTGTTCTGAAAGAAAAGG GCTATTCACGAGCTGATGATAGAGGTAGGAATCTTAAAGCTGCAAAGTACTCCATAGCTCTTCAATATCTGGTCTATGAT GGAATTGTCAAAGATGAAGTAGAATAG
Protein sequence (LotjaGi3g1v0540800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVETFFWSGSSHLKLLQQHSNSNLLLLSGPPSSGKTSLLFQYAFNVAAAANSSNPNVLFICNRQRLDSKPPFLSQGIDPS SDVFHRIQMKYVNDDEDIRKYFAAFHLLDTLPAAVVIDDFGDFFDNKVCQQRYSNPRGRDLAMVKSLALCHNAISYANQK GSCKLLLSDTHTHQGDSPRFHFIYKKWIHTTFAIKVSGVAEGDVSGSFVLKEKGYSRADDRGRNLKAAKYSIALQYLVYD GIVKDEVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 3.9E-81 | – | |
| PANTHER | 1 | 245 | 245 | 3.9E-81 | – | |
| Gene3D | 14 | 218 | 205 | 3.0E-9 | – | |
| SUPERFAMILY | 20 | 214 | 195 | 1.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0540800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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