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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0542100 |
| Transcript ID | LotjaGi3g1v0542100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G52680.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0542100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95868663..95870551) extracted from Lotus japonicus Gifu genome v1.2.
CACATATTGAGACAGATCATTTGACAACATAGAACAAGAATGACCTAGTGGAAGATCATTAGATCAACGACCTCCTATGT GAGTTCTACTTCTGTTTCTGTGCTCTCATCAAGCGCATAATTAACATCCATATATAATGGCCAGTGCTTGTGGTGGGTGC AAATGCAATGAAAGCAGAACCTACATGCACTACGAGATTCAGTGATGATTTGTGAATTTGCTGCATTTTATCTAACATGG ACGACGACACCATTAGCAGCTTACCGGACGCGATCCTCAGCCGCATACTCTCTTTTCTCCCAACCAAACACGCGGCTGCA ACAAGCGTTCTCTCCAAACGATGGAAGCCACTATGGCGTTCAGTCTCTACTCTCCACTTTGATGACACCCTCTATGTCAA AAGCAACTATACTGGCATGAACAACTTCCACAAAATCAGAGAGGATTATTCTCGCTTTCTCCAATGCGTCTATGCAGTCA TGCTCTATCGAGATCTCCACCTACCCATCCATACATTCCGCCTTCACTGTGATTCCTGTGAATTTTATGATCCTACCAAT GTAACCATATGGGTTAATGCTGCAGTTCAGCGCAAAGTTCAGGATTTAGAACTCTCCTTAGGTTTTCATCCGTGTAATAT TGACAGACGACCCACCAACTTGTCTTCCATCTTCACTTGCACCACTCTTGTGGTTCTCAAGTTGTGCCAGATAGATTTGA TTCCGTTTTCCTCTGGTGTTGATTTGCCCTCCCTCAAAGTCTTGCATCTACAAGATTTGATTTTCTTAGAACGTGAATCT CTTGCAAAGCTTCTTTCTGGATCTCCAAATCTTGAGGATTTCAAGGCGAGGGGATTGCGTTTTGATAATTATAACACTGA TAGAGAGTTTAAACCCTTGCCCAAGTTGGTCAGAGCAGATATTTCAGCCACACAAACTTGTTTTTTGTTCACAGAAGTGG TTAACAATGTCCAGTTTTTGCACTTAGACAAGGTAGTAGTATTATATGTGATTTACTGATTTATTATCCATCATTCTTTT TCATTCTTATTCAAAATGGAGTTTTTTATTTCTTTGAATTGTAACTCATGCAGATTCCTTCTAGACTCTTACTTGAGCCT CAATGGATAGACTTGGACCTCGGCTACATTTTCCCCATGTTTCACAATTTAACCCATGTTGAGCTTGTCTATCAACGCTA TAATTCTGATTGGTCTCAAGTAGTGGAATTCCTCCATCATTGCCCCAAGCTTCAAGTTCTTTCCATACACCAGGTTTGCT TAGAGAATTAGGAGGATGATTTTTTTCTAATTTTTGTCACATGTTTTCATTTGTTTATTTTGTGTTGTTTATTGTTGACA GACAGATTTTCATTACATTGACTCTAGACAAATTGAAAAATCAGGAGATTGGCAATTCCCACCGTCTGTTCCTCAATGCA TTCTATTACACCTTAGAAGATGCTATCTAAATGGTTATAGAGGCACCAAAGCTGAGTTTGAATTTGCAAGATATATTATG GAGAATGGAAGATTTTTAAAGAGTATGGCCATATCCAGTGGCATTGCCGGAAATCAAAAGTTTAAGATGTTAAAAGAATT GTCCTATTGCCAGAGGTCTTCTGCAACATGTAGACTTTCCTTTAAATGAAACAAAATTTGGTAGCTGCATGTATGCAAGA GGGGCTCTGCAACTTTTAGACTTTCCTTTCATTTCTTCACTTTTAAGTTTTAACTAGGATCAAGCTACAAGGATATTTAC TGTCTTAATTTTATAGTTGAACTTGTTCTGTACTGCTGAATAAATTGCAAATTTTAACTCACTTTTCTCTTTCGGCATAA TTAATTTTTGGTATTATTTTGTATCCATTTTCTAGCAGAATTTGGTCAG
CDS sequence (LotjaGi3g1v0542100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGACACCATTAGCAGCTTACCGGACGCGATCCTCAGCCGCATACTCTCTTTTCTCCCAACCAAACACGCGGC TGCAACAAGCGTTCTCTCCAAACGATGGAAGCCACTATGGCGTTCAGTCTCTACTCTCCACTTTGATGACACCCTCTATG TCAAAAGCAACTATACTGGCATGAACAACTTCCACAAAATCAGAGAGGATTATTCTCGCTTTCTCCAATGCGTCTATGCA GTCATGCTCTATCGAGATCTCCACCTACCCATCCATACATTCCGCCTTCACTGTGATTCCTGTGAATTTTATGATCCTAC CAATGTAACCATATGGGTTAATGCTGCAGTTCAGCGCAAAGTTCAGGATTTAGAACTCTCCTTAGGTTTTCATCCGTGTA ATATTGACAGACGACCCACCAACTTGTCTTCCATCTTCACTTGCACCACTCTTGTGGTTCTCAAGTTGTGCCAGATAGAT TTGATTCCGTTTTCCTCTGGTGTTGATTTGCCCTCCCTCAAAGTCTTGCATCTACAAGATTTGATTTTCTTAGAACGTGA ATCTCTTGCAAAGCTTCTTTCTGGATCTCCAAATCTTGAGGATTTCAAGGCGAGGGGATTGCGTTTTGATAATTATAACA CTGATAGAGAGTTTAAACCCTTGCCCAAGTTGGTCAGAGCAGATATTTCAGCCACACAAACTTGTTTTTTGTTCACAGAA GTGGTTAACAATGTCCAGTTTTTGCACTTAGACAAGATTCCTTCTAGACTCTTACTTGAGCCTCAATGGATAGACTTGGA CCTCGGCTACATTTTCCCCATGTTTCACAATTTAACCCATGTTGAGCTTGTCTATCAACGCTATAATTCTGATTGGTCTC AAGTAGTGGAATTCCTCCATCATTGCCCCAAGCTTCAAGTTCTTTCCATACACCAGACAGATTTTCATTACATTGACTCT AGACAAATTGAAAAATCAGGAGATTGGCAATTCCCACCGTCTGTTCCTCAATGCATTCTATTACACCTTAGAAGATGCTA TCTAAATGGTTATAGAGGCACCAAAGCTGAGTTTGAATTTGCAAGATATATTATGGAGAATGGAAGATTTTTAAAGAGTA TGGCCATATCCAGTGGCATTGCCGGAAATCAAAAGTTTAAGATGTTAAAAGAATTGTCCTATTGCCAGAGGTCTTCTGCA ACATGTAGACTTTCCTTTAAATGA
Protein sequence (LotjaGi3g1v0542100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDTISSLPDAILSRILSFLPTKHAAATSVLSKRWKPLWRSVSTLHFDDTLYVKSNYTGMNNFHKIREDYSRFLQCVYA VMLYRDLHLPIHTFRLHCDSCEFYDPTNVTIWVNAAVQRKVQDLELSLGFHPCNIDRRPTNLSSIFTCTTLVVLKLCQID LIPFSSGVDLPSLKVLHLQDLIFLERESLAKLLSGSPNLEDFKARGLRFDNYNTDREFKPLPKLVRADISATQTCFLFTE VVNNVQFLHLDKIPSRLLLEPQWIDLDLGYIFPMFHNLTHVELVYQRYNSDWSQVVEFLHHCPKLQVLSIHQTDFHYIDS RQIEKSGDWQFPPSVPQCILLHLRRCYLNGYRGTKAEFEFARYIMENGRFLKSMAISSGIAGNQKFKMLKELSYCQRSSA TCRLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 404 | 402 | 2.2E-69 | – | |
| SUPERFAMILY | 3 | 55 | 53 | 6.93E-12 | ||
| ProSiteProfiles | 3 | 56 | 54 | 10.213 | ||
| PANTHER | 3 | 404 | 402 | 2.2E-69 | – | |
| Pfam | 5 | 43 | 39 | 2.2E-7 | ||
| SMART | 9 | 50 | 42 | 0.0054 | ||
| SUPERFAMILY | 141 | 313 | 173 | 1.26E-10 | – | |
| Pfam | 172 | 197 | 26 | 3.3E-4 | ||
| Pfam | 334 | 376 | 43 | 1.6E-13 | ||
| SMART | 337 | 407 | 71 | 1.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0542100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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