Transcript — View — Lotus Base

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LotjaGi3g1v0545100.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0545100
Transcript ID	LotjaGi3g1v0545100.2
Related isoforms 2	LotjaGi3g1v0545100.1 LotjaGi3g1v0545100.3
Lotus japonicus genome version	Gifu v1.2
Description	Cell number regulator 6; TAIR: AT2G45010.1 PLAC8 family protein; Swiss-Prot: sp\|B6SGC5\|CNR6_MAIZE Cell number regulator 6; TrEMBL-Plants: tr\|I3SSP8\|I3SSP8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0545100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:96115110..96118058) extracted from Lotus japonicus Gifu genome v1.2.

TTGACCAAGACTGAACCGTGGTTAGTTTTTGACTTACCTCCCTCTGTTTCTTCTGAATTTCCGAGATAGATCGAATCAAC AGTAACACCATCTCATTTCAGGTACGCAATGTTTTAGGTCTTGTCTGATTTCTCTTCTTCTTCTCGTTGCATTTTCCTCT CTCACCATTCAATTCAATTCAATTCAATTCAATCAAAGCTGGAAGAAGAAGGAGGAATCGATTCCTCTCGAATTCGATGA TGGAAGAGAGTAGTAACCAATCGCGTTACGTGAAGCTCACAAAAGACCAGGCTCCTCTCGAAGAAGACATTGTCCCTGGT GAACTCAATCAACCCATCGAGGTTCCTCAGGTCAGAACGATCCATCTTCCCTGGATCTGTAACTTGTTTTGTTGGTTAAT TTGCTGATGATGGATTTTTGATGCTTTTGCAGTTGGCTGTTCGCAAGTGCCATGAATGTAGACAGCCTCTACCTGAAAGC TATGCACCTCCTGCTGATGAACCTTGGATGACTGGGATCTTTGCTTGTGCTGAAGACAGGGAAAGTTGTAAGTGATTACA TCACTAATCTCTCAATTGCACTTGAATGTAGCTATGGTCCATTTTAGATTACTCCAATAGCAGTTATGGTGTTAATAGTG TGTTTTTTTTTTTCTGTGTCAATGTAATTGTTTCCCATTGATATGATTAAACTCAGTTTTTATAAGTCTACAATGTAGGT CTGTGACTACTCTAAGGCCTCGTTTGGGAGAGCTTATTTGAGCTTATCTCATAACATAAGCGCTTGTGCCAGTATTTGGG ACAGCTTATGGCTGTTTTGAGCTTATTTTCATAAGCTACTCATGATAGCTTATGAAAAAGAGCTTAGGCTTATATATAGC TTATTTTCAATTTATTTCAATACATTTTTTAAAATAGCTTGTGAATAAGCGCGCTTATGTCATAAGCGCTTACGGTTGCT TATAACCATAAGAGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTAATACTACTAACATGTTGACTGAGAGTGTGTTTAG TTTATCGTTTGCACTGACGTTCACACACATTCAAGATAAAATGTTAATGGAACTCTTCTTATGAATTGGAACGTACGACT GTTCATGTTGCGCTCAACTGATATGCAAACATGCACCAAGTTATACACTGAAAACTTGCTTCGACTTAATTATCCTCTTA CAATCAGAATCTCTTTGTGCTCTGTATGCTCAATTATGGTTGGCCTGTGCCTTACATTGTAATGTGAAGAATTTATATGT ACAGTTGTTGTAAAATTTTGCATATTGCGGTGACATTAGACATACTATTGTGGAAAATTGCTTCTTTTAATATTCTTTCA CCATTCATTGCAGGCTTGACAGGACTATTTTGTCCTTGTGTATTATTTGGGCGCAATTTCGAGAGCTTGAGAGAAGACGT TCCTTGGACCGGGCCATGCATTTGTCATGCCATTTTTGTTGAAGGTGGCATTTCTCTTGCTATAGCAACTGTAGTTGCGA CTTCCGTCATTTCTGGTATTGACCCAGGGACAACATGTCTCATTTATGAGGGTTTATTTTTTACATGGTGGATGTGTGGC ATTCATAATGGTCAAGTTCGACAAACACTGCAGAAGAAATATCACTTGAAGGTACATTGGTTGAAGATCTTTCTCACTAC AAGTAATGGTCAACTTTAAAGATGTAATGCATGTATATGTGTGTGTTGTCAGATAGCCCTTTGCTGAGAAATATGATTCT GCTTGCTTCAAATTTTGAATATAGAATTGGTTTCTTTTTTTAAAAAATTGTCATGAAGGAGCTTGTTTTGTTAAATACCC TACCGCCTACCGGTATTTTCTCTGAGCAACATTATGCAGTGATAGAAACTGAATATGCATATTGTGACCTATTTAGTTAG AAAGGAAACATAGTTAGGCTTGCTAGTCTGCAATCTTATCATCTAACTATGAAATTCTGAGAGACATTCAGGATTTTTAT CTCTTTCTCGATTCTACAAGACGGGAAAGAGAAGCTGATGCTCATGTTGTGTTGCATGCCATCTTAACTGTTATCTGGTG TCACTGGTTGTTTTGTTCTTTCTTGTTTCTCTACAAATGTCATTATCTGTAGAGATAGTTTCACGTTTTACTCAGTTAAT GATAACGGGGCCATCTATCCAATGCAAGAGGGGGAAGATAAAGAAATTATAGATGATGTATAGGACAAGCGATAGAGAGA AAAATTGGTTGTATGTGAGGTGTTGATTCTGTTGGGTGTTTAAAAATCAGAACTGGATACTATACTTGATGCATGATATT ATTCATTGTTTCTTCTTATATTTATACATAAACGTTATTGTTAAGTATTGGTTGTTTGTATTTTATGACTGCAGAATTCA CCTTGTAGTGCATGCTGTGTGCACTGCTGCTTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGAAGGCT CTCAGACAATGTTTTCTCAGAAATGACTGTTGTGAACCCTCCTCCCATTCAAGAGATGAAGTCTACTGATAATGATGATA AGGAAAATCCTGAAACCTCTTCAGCTAACAACAATGAGCACACTGATTTGGAGATGCATCCTATATAAGCCATAACATTG TTAATACTCAAAGAAACTAAAAGATATTATGTTTCTTATTATACTTTTTTGTAGAAAAAATTTTCCTTAGACCTTTGGCT TGAGTTCTTCTTCCTGTTGCATTCGACATGTTGGCCATTGAAGCAACTCAAATCTGCTTTAGAGAGCCAATTTATGCCGA ATCCTAAATTTTTTTTTATGGCTTTTCCAGATTCAAACATTGACCCACCTTTTAAAGGTGGAGTATCTTTTTATTGTTGC CTTTAGGGTTTACTTTTCATCAATTATGTTTTACTGTCAATATTCTAATGTTGTCTTTATATTATCTTA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0545100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGAAGAGAGTAGTAACCAATCGCGTTACGTGAAGCTCACAAAAGACCAGGCTCCTCTCGAAGAAGACATTGTCCC TGGTGAACTCAATCAACCCATCGAGGTTCCTCAGTTGGCTGTTCGCAAGTGCCATGAATGTAGACAGCCTCTACCTGAAA GCTATGCACCTCCTGCTGATGAACCTTGGATGACTGGGATCTTTGCTTGTGCTGAAGACAGGGAAAGTTGCTTGACAGGA CTATTTTGTCCTTGTGTATTATTTGGGCGCAATTTCGAGAGCTTGAGAGAAGACGTTCCTTGGACCGGGCCATGCATTTG TCATGCCATTTTTGTTGAAGGTGGCATTTCTCTTGCTATAGCAACTGTAGTTGCGACTTCCGTCATTTCTGGTATTGACC CAGGGACAACATGTCTCATTTATGAGGGTTTATTTTTTACATGGTGGATGTGTGGCATTCATAATGGTCAAGTTCGACAA ACACTGCAGAAGAAATATCACTTGAAGAATTCACCTTGTAGTGCATGCTGTGTGCACTGCTGCTTGCACTGGTGTGCCTT GTGTCAGGAGCACAGGGAGATGAAGGGAAGGCTCTCAGACAATGTTTTCTCAGAAATGACTGTTGTGAACCCTCCTCCCA TTCAAGAGATGAAGTCTACTGATAATGATGATAAGGAAAATCCTGAAACCTCTTCAGCTAACAACAATGAGCACACTGAT TTGGAGATGCATCCTATATAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0545100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMEESSNQSRYVKLTKDQAPLEEDIVPGELNQPIEVPQLAVRKCHECRQPLPESYAPPADEPWMTGIFACAEDRESCLTG LFCPCVLFGRNFESLREDVPWTGPCICHAIFVEGGISLAIATVVATSVISGIDPGTTCLIYEGLFFTWWMCGIHNGQVRQ TLQKKYHLKNSPCSACCVHCCLHWCALCQEHREMKGRLSDNVFSEMTVVNPPPIQEMKSTDNDDKENPETSSANNNEHTD LEMHPI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR15907:SF142 View details on PTHR15907:SF142 Search for proteins/transripts with this domain View external data on PTHR15907:SF142	2	228	227	8.0E-130	–
PANTHER	PTHR15907 View details on PTHR15907 Search for proteins/transripts with this domain View external data on PTHR15907	2	228	227	8.0E-130	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01571 View details on TIGR01571 Search for proteins/transripts with this domain View external data on TIGR01571	62	195	134	6.8E-29	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04749 View details on PF04749 Search for proteins/transripts with this domain View external data on PF04749	63	193	131	2.0E-21	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	210	246	37	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0545100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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