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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545100 |
| Transcript ID | LotjaGi3g1v0545100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell number regulator 6; TAIR: AT2G45010.1 PLAC8 family protein; Swiss-Prot: sp|B6SGC5|CNR6_MAIZE Cell number regulator 6; TrEMBL-Plants: tr|I3SSP8|I3SSP8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0545100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96115524..96117737) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTGATGCTTTTGCAGTTGGCTGTTCGCAAGTGCCATGAATGTAGACAGCCTCTACCTGAAAGCTATGCACCTCCTGC TGATGAACCTTGGATGACTGGGATCTTTGCTTGTGCTGAAGACAGGGAAAGTTGTAAGTGATTACATCACTAATCTCTCA ATTGCACTTGAATGTAGCTATGGTCCATTTTAGATTACTCCAATAGCAGTTATGGTGTTAATAGTGTGTTTTTTTTTTTC TGTGTCAATGTAATTGTTTCCCATTGATATGATTAAACTCAGTTTTTATAAGTCTACAATGTAGGTCTGTGACTACTCTA AGGCCTCGTTTGGGAGAGCTTATTTGAGCTTATCTCATAACATAAGCGCTTGTGCCAGTATTTGGGACAGCTTATGGCTG TTTTGAGCTTATTTTCATAAGCTACTCATGATAGCTTATGAAAAAGAGCTTAGGCTTATATATAGCTTATTTTCAATTTA TTTCAATACATTTTTTAAAATAGCTTGTGAATAAGCGCGCTTATGTCATAAGCGCTTACGGTTGCTTATAACCATAAGAG CTTAATTAAGCTGTTTTCCCAAACGGGGCCTAATACTACTAACATGTTGACTGAGAGTGTGTTTAGTTTATCGTTTGCAC TGACGTTCACACACATTCAAGATAAAATGTTAATGGAACTCTTCTTATGAATTGGAACGTACGACTGTTCATGTTGCGCT CAACTGATATGCAAACATGCACCAAGTTATACACTGAAAACTTGCTTCGACTTAATTATCCTCTTACAATCAGAATCTCT TTGTGCTCTGTATGCTCAATTATGGTTGGCCTGTGCCTTACATTGTAATGTGAAGAATTTATATGTACAGTTGTTGTAAA ATTTTGCATATTGCGGTGACATTAGACATACTATTGTGGAAAATTGCTTCTTTTAATATTCTTTCACCATTCATTGCAGG CTTGACAGGACTATTTTGTCCTTGTGTATTATTTGGGCGCAATTTCGAGAGCTTGAGAGAAGACGTTCCTTGGACCGGGC CATGCATTTGTCATGCCATTTTTGTTGAAGGTGGCATTTCTCTTGCTATAGCAACTGTAGTTGCGACTTCCGTCATTTCT GGTATTGACCCAGGGACAACATGTCTCATTTATGAGGGTTTATTTTTTACATGGTGGATGTGTGGCATTCATAATGGTCA AGTTCGACAAACACTGCAGAAGAAATATCACTTGAAGGTACATTGGTTGAAGATCTTTCTCACTACAAGTAATGGTCAAC TTTAAAGATGTAATGCATGTATATGTGTGTGTTGTCAGATAGCCCTTTGCTGAGAAATATGATTCTGCTTGCTTCAAATT TTGAATATAGAATTGGTTTCTTTTTTTAAAAAATTGTCATGAAGGAGCTTGTTTTGTTAAATACCCTACCGCCTACCGGT ATTTTCTCTGAGCAACATTATGCAGTGATAGAAACTGAATATGCATATTGTGACCTATTTAGTTAGAAAGGAAACATAGT TAGGCTTGCTAGTCTGCAATCTTATCATCTAACTATGAAATTCTGAGAGACATTCAGGATTTTTATCTCTTTCTCGATTC TACAAGACGGGAAAGAGAAGCTGATGCTCATGTTGTGTTGCATGCCATCTTAACTGTTATCTGGTGTCACTGGTTGTTTT GTTCTTTCTTGTTTCTCTACAAATGTCATTATCTGTAGAGATAGTTTCACGTTTTACTCAGTTAATGATAACGGGGCCAT CTATCCAATGCAAGAGGGGGAAGATAAAGAAATTATAGATGATGTATAGGACAAGCGATAGAGAGAAAAATTGGTTGTAT GTGAGGTGTTGATTCTGTTGGGTGTTTAAAAATCAGAACTGGATACTATACTTGATGCATGATATTATTCATTGTTTCTT CTTATATTTATACATAAACGTTATTGTTAAGTATTGGTTGTTTGTATTTTATGACTGCAGAATTCACCTTGTAGTGCATG CTGTGTGCACTGCTGCTTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGAAGGCTCTCAGACAATGTTT TCTCAGAAATGACTGTTGTGAACCCTCCTCCCATTCAAGAGATGAAGTCTACTGATAATGATGATAAGGAAAATCCTGAA ACCTCTTCAGCTAACAACAATGAGCACACTGATTTGGAGATGCATCCTATATAA
CDS sequence (LotjaGi3g1v0545100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTGCAGTTGGCTGTTCGCAAGTGCCATGAATGTAGACAGCCTCTACCTGAAAGCTATGCACCTCCTGCTGATGA ACCTTGGATGACTGGGATCTTTGCTTGTGCTGAAGACAGGGAAAGTTGCTTGACAGGACTATTTTGTCCTTGTGTATTAT TTGGGCGCAATTTCGAGAGCTTGAGAGAAGACGTTCCTTGGACCGGGCCATGCATTTGTCATGCCATTTTTGTTGAAGGT GGCATTTCTCTTGCTATAGCAACTGTAGTTGCGACTTCCGTCATTTCTGGTATTGACCCAGGGACAACATGTCTCATTTA TGAGGGTTTATTTTTTACATGGTGGATGTGTGGCATTCATAATGGTCAAGTTCGACAAACACTGCAGAAGAAATATCACT TGAAGAATTCACCTTGTAGTGCATGCTGTGTGCACTGCTGCTTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATG AAGGGAAGGCTCTCAGACAATGTTTTCTCAGAAATGACTGTTGTGAACCCTCCTCCCATTCAAGAGATGAAGTCTACTGA TAATGATGATAAGGAAAATCCTGAAACCTCTTCAGCTAACAACAATGAGCACACTGATTTGGAGATGCATCCTATATAA
Protein sequence (LotjaGi3g1v0545100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLQLAVRKCHECRQPLPESYAPPADEPWMTGIFACAEDRESCLTGLFCPCVLFGRNFESLREDVPWTGPCICHAIFVEG GISLAIATVVATSVISGIDPGTTCLIYEGLFFTWWMCGIHNGQVRQTLQKKYHLKNSPCSACCVHCCLHWCALCQEHREM KGRLSDNVFSEMTVVNPPPIQEMKSTDNDDKENPETSSANNNEHTDLEMHPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 194 | 191 | 5.7E-111 | – | |
| PANTHER | 4 | 194 | 191 | 5.7E-111 | ||
| TIGRFAM | 28 | 161 | 134 | 4.5E-29 | ||
| Pfam | 29 | 159 | 131 | 1.3E-21 | ||
| MobiDBLite | 176 | 212 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0545100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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