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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545900 |
| Transcript ID | LotjaGi3g1v0545900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|A0A127ZNP0|A0A127ZNP0_CAJCA Calmodulin binding protein; Found in the gene: LotjaGi3g1v0545900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96217245..96221165) extracted from Lotus japonicus Gifu genome v1.2.
TTGACCCTCTCTATCAGCAAATTGGCAAGCACAGAAAATGAAAGGCTATTGTTGCTTTCCATGTTTCCTATTTCATGATT AGATCAGAGCAGGGTGAAAGGCTAGTGTTGTCATTTCAGACCCAACATACACATGAACATGCCTGCTACAGTTGGAAAAG AGAAAGAAAATAAGAATGAAGCCAAGAGAAATAGAGAAGAGCTCATTATTCATTCAGAGGCATGAAAACAAAGTGACTAT ATGTGCAACACTAGCTCTTGGAGACCCACTTTTGGAACAGAGGAAGTTGAATGCTATGCATGATTGATTGCATTTGCATA TAAAAATCATATCCACTTCACAAGAATTTCTGAGAGCTAAGATTTTCTGCTCCACAAGAGGAAAAAATCTTGATATCTGT GCACATTTTACTTGATGAAAATCCATCCAAATTTCCACATTCTTGATTTGAGTAACTGATACTATTATAAAAGAATGTTT GCTTGTTTCAAGGCTATTTCTATTTCATCTGAATTTAATGACTGCATCATCACAGCACTTGCTTCCATGCATCAATCTCT CTGAAACGGTGGCTCTTGTCCTTTCTTTGGAGATTTCAAACAAACATGTGTAAGGCAATAACTTTGATCTCAGTTCAAAT CTGCACAATTTTCCAACTATCTTGGCCTGTGTGCACTGATGTATAATTTTCTCTGAAATCAATGTTCTGATCATTCATGT ACCTGGATTTATAACTTCTTGTGCAAATAAGAATCAAATTTCATGACAAGTTCTGAAAACTGTTCTGTCTTTTTGGACAA GTCTGATGTTTGATTTGTAGTGTTGTGCAATTACATTACTTAAATCAATGCTTATTCACCACTCAATTGCACATTTCATA CATCTTGTGCACAAGAGGATGCTTATGGGAAATTTTTCAGATCACAGGCTTTGAAGTTGTCCTATGTCATATTGTTAAAT GGCCAAGAAGAAGAGCTGGTTTAATTTGGTGAAGAGGTTCTTTATATGGGACACTCATTCCACACAAGAGAAGGTACATA AAATCTTATGCTTTTTTGAACTTAAATCTTCAATTATGATTGTGTTTCTCACGAGATAGAAAATCTCTTTTTCCAGAAGG AGAGAAAAAGGAAATGGGTATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTACAGCTCCACCACCACCATCAAAA GAAACAACACTAAGTGAAGCAGAGGAGAAACAGAGCAAACAGGGGAGGAACAGAGCTACTGCTGCTGAGGCTGTTCTGCT CACTGATGTCTCACAATCTTCACATGAATGTCAAGAAAACTCAAAAGAATCTCTACTTGTTAAAAATATGAATAGTGCTC CTCAATCCATATACCAGTGCCAGAGGGAGATTAGAGAATCTGCTGCCATCAAAATCCAAACTGCATTCCGGGGTTACCTG GTGAGTTTGTTCAAGAAATGCTCTTTGATATGTGTCGGTCAAAATCCTCTTTGCATAATATTTGCCCTTTCTGCTAAATT ACTTAGTCATGGATTTAGATTATCTTGAGAAAAAATAATATGATTAATGATAGAAAAACTGAAGTATTAGAAGCTAAAGC TTGTTAGCAATTTAAGAAATTTACAAGATTTCCTCCACCATCTGGTGAGCTCACAAATTAAACTCCAGAGAAAGTAGAAG ACCGTGTTTGAAAGTGTTTATTTGATGTTATGTTATAGGATTAACACTCATGTAAGTGTCTAAGCATTTGGATGAGTTTA TTTGAGCTTATCTTACACCATAGCACTTATGTAAGTGTCTAAGTAACCTTACAAAAATAGCTTTTGACAAACATGAGTTG TTTTGAGCTTATTTTCATATGGTGCTCACATTAGCTTATGATTGAGTGTTTATACCTACAAAATTTTTTGAGCTTGTTTT AATAAACTTGTCAAATTAGTTTGTGAATAAACGCTTAATTAAGCTGTTTACACAAACGTGCTGAATTGAGTGAAGATTAA AGAAAGTAGCAATGGGAATTATAAGTAGAAGAAACCAAGGTCACTTTGCTAGTGTGTAGGTACTATTCTCTTATTCACTG ACTGCTAAGGCATTACAGGCAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAGCTTCAAGCTATCATTCGTGGCAG AGCAGTGAGACGCCAAGCTATGAGTACTCTCAAGTGCTTGCAGTCCATTGTAAGTATCCAGTCAAAAGTCTGTGCAAGGA GATTCCAAATGGTGGAAGGAAAATGGGACTTCACTGAAAATGAAGAGATGCAAGATTCTAAAGACAAGATAATTAGGGTG AGTATAACAGGTTATATACTTATATAACATGTTTGGATTAACTTCTCTTTATTGGAATCAAATCTGAGAAGCTACCCACA GAAACTTCTTCCCAAAATTGATTACGTATTAGAATCAATTATAGAAGAGTTTCAAAACATGGTCATAGTACACATAATTA GCTCAATTTACATTGCAAACACAAAGTCACACTGCATAAGCCACATTCTGCTCTTTATCATGGGAGTTTATGAAAGTGCA TTGTTGCTATTTTTTTTCAGATGGACTCAAACAGTGAAAGAAAATGGGATCACAGAACTTTATTAAAGGAAGAGGTAGAT GCTTCTTTCATAAGCAAGAAAGAAGCAAGTCTCAAGAGAGAAAGAATAAAAGAGTACTACTCATTTAACCATAGAGTAAG CTTCTACCTCTTACATATATTTGTGCTTGGTTCTTTTGCACATTATAAGACTTGTTTGATTTCCTTCTCAGTTTTCTATA TTTAAAAACGGTTTTCAGAAACAATTTTAAAACCTCTTTTTCGAAAGAGAAAATGAATAAAAAAAATAATACGGTTTGAA CGAGATGTTTTGCAAAACTGAAAAATCTGTAACTTAAGAACTAAGAACACAAATTTAGAAAACATTGTTTGGGGATTCAG CTTTAAAAATTGAAAATTAGAACTATTTTAAAGATAAGACGAAAACTGTTCTACAAAACAGTAATAAGAAAGACACTTAA GATTCTCGAACTAACCAACAAAAACCCTGATTAGAGGTCAGCGGAGACGGATAGAAGTAAAGTAAATGGAAGATGGAGGT ACTGGCTGGATCAGTGGGTAGATACACAGCTTTCCAAAAGCAAAGAACTTGAGGATTTAGACTCAGTTTTCAGCTCACAT TCTAGAGCTGGGGAGGAACATGAAGGAAGGAAACTTAAGCTGAGAAGTACTCGAAGACAAAATCCAGTTGAAGGATTAGA TTCTCCATCAAGAAAATCTTTTCCTCACAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATTTTCTTCAACCTCTCCTG CAACTCCAGCATACATGGCTGCAACTGAATCAGCAAGAGCCAAAGCAAGATTAACAAGCTCCCCAAAAGCAAGATCTGGG AATTTGGACACATACTCTGATAGCTATTCACCTTCCAAGAAAAAGCTACCAATTGTATCTTCTGTTAACCAGCAAAGATC TCCAAGCTTCAAGGGCCTTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGCATTAATTCAGACTGTTCAT CACTGCCTAATTGGGATCGCCCAAGTTCCTTCAAATGAAGCTATGAATGCTGATGTTGCTTGAATTAGCAACATTCCTTG TATCATGGTAGGGCTTGAAGTGCAAAAATTGTTTATAACTATGTCTGATGTATCATGTATATGTGATTGGATGTTATTTT GGTTAAGAGTTGAACATTTATTTGACAGAAAGTAGTTCATTTTTTTGTTGATTAGATGATTAGTCGTATGCTTTAAGCCA TTGAAGACTCATTTTTCAAACAAGCAATTTTTTTCCTTCAGGGTTCTCATTCTCATCTTATTCAATATTTTTATTTATAA C
CDS sequence (LotjaGi3g1v0545900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGAAGAAGAGCTGGTTTAATTTGGTGAAGAGGTTCTTTATATGGGACACTCATTCCACACAAGAGAAGAAGGA GAGAAAAAGGAAATGGGTATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTACAGCTCCACCACCACCATCAAAAG AAACAACACTAAGTGAAGCAGAGGAGAAACAGAGCAAACAGGGGAGGAACAGAGCTACTGCTGCTGAGGCTGTTCTGCTC ACTGATGTCTCACAATCTTCACATGAATGTCAAGAAAACTCAAAAGAATCTCTACTTGTTAAAAATATGAATAGTGCTCC TCAATCCATATACCAGTGCCAGAGGGAGATTAGAGAATCTGCTGCCATCAAAATCCAAACTGCATTCCGGGGTTACCTGG CAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAGCTTCAAGCTATCATTCGTGGCAGAGCAGTGAGACGCCAAGCT ATGAGTACTCTCAAGTGCTTGCAGTCCATTGTAAGTATCCAGTCAAAAGTCTGTGCAAGGAGATTCCAAATGGTGGAAGG AAAATGGGACTTCACTGAAAATGAAGAGATGCAAGATTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAA AATGGGATCACAGAACTTTATTAAAGGAAGAGGTAGATGCTTCTTTCATAAGCAAGAAAGAAGCAAGTCTCAAGAGAGAA AGAATAAAAGAGTACTACTCATTTAACCATAGAAGGTCAGCGGAGACGGATAGAAGTAAAGTAAATGGAAGATGGAGGTA CTGGCTGGATCAGTGGGTAGATACACAGCTTTCCAAAAGCAAAGAACTTGAGGATTTAGACTCAGTTTTCAGCTCACATT CTAGAGCTGGGGAGGAACATGAAGGAAGGAAACTTAAGCTGAGAAGTACTCGAAGACAAAATCCAGTTGAAGGATTAGAT TCTCCATCAAGAAAATCTTTTCCTCACAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATTTTCTTCAACCTCTCCTGC AACTCCAGCATACATGGCTGCAACTGAATCAGCAAGAGCCAAAGCAAGATTAACAAGCTCCCCAAAAGCAAGATCTGGGA ATTTGGACACATACTCTGATAGCTATTCACCTTCCAAGAAAAAGCTACCAATTGTATCTTCTGTTAACCAGCAAAGATCT CCAAGCTTCAAGGGCCTTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGCATTAATTCAGACTGTTCATC ACTGCCTAATTGGGATCGCCCAAGTTCCTTCAAATGA
Protein sequence (LotjaGi3g1v0545900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKKSWFNLVKRFFIWDTHSTQEKKERKRKWVFGRLKSKRLPSITAPPPPSKETTLSEAEEKQSKQGRNRATAAEAVLL TDVSQSSHECQENSKESLLVKNMNSAPQSIYQCQREIRESAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQA MSTLKCLQSIVSIQSKVCARRFQMVEGKWDFTENEEMQDSKDKIIRMDSNSERKWDHRTLLKEEVDASFISKKEASLKRE RIKEYYSFNHRRSAETDRSKVNGRWRYWLDQWVDTQLSKSKELEDLDSVFSSHSRAGEEHEGRKLKLRSTRRQNPVEGLD SPSRKSFPHRRQCSVGEDHSFSSTSPATPAYMAATESARAKARLTSSPKARSGNLDTYSDSYSPSKKKLPIVSSVNQQRS PSFKGLSVPIKSSRTIKDLSINSDCSSLPNWDRPSSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 425 | 425 | 8.7E-179 | – | |
| PANTHER | 1 | 425 | 425 | 8.7E-179 | – | |
| MobiDBLite | 41 | 72 | 32 | - | – | |
| SMART | 117 | 139 | 23 | 3.8E-4 | ||
| Gene3D | 117 | 160 | 44 | 1.1E-5 | – | |
| ProSiteProfiles | 118 | 146 | 29 | 10.237 | ||
| Pfam | 120 | 139 | 20 | 1.2E-5 | ||
| ProSiteProfiles | 142 | 169 | 28 | 7.73 | ||
| MobiDBLite | 286 | 409 | 124 | - | – | |
| MobiDBLite | 286 | 313 | 28 | - | – | |
| MobiDBLite | 337 | 351 | 15 | - | – | |
| Pfam | 338 | 394 | 57 | 2.1E-7 | ||
| MobiDBLite | 367 | 409 | 43 | - | – | |
| MobiDBLite | 419 | 438 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0545900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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