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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0546600 |
| Transcript ID | LotjaGi3g1v0546600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Equilibrative nucleoside transporter; TAIR: AT1G70330.1 equilibrative nucleotide transporter 1; Swiss-Prot: sp|Q8VXY7|ENT1_ARATH Equilibrative nucleotide transporter 1; TrEMBL-Plants: tr|I1LNZ3|I1LNZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0546600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96296165..96298678) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGCATGAAATAAAAAAGCTAAAGTGAGTGGTGTCATTATTAAGCGCACCACTGACCAGAAACACGCACCGACCCG AACCCGAACGGAATCGAAATGGGTTTCACCGAATCGAGCCTCCTTCTACCGTCGGGTTCTGGTTCATCGCCGGCGAAGAA GGTTCCAGAAGACAAATGGCAGTTAGCATACATCATCTACTTCACCCTCGGCCTCGGTTACTTGCTTCCATGGAACGCTT TCATCACCGCCGTCGATTACTTCTCCTACCTCTACCCCGACGCCAGCGTTGACCGCATCTTCGCCGTCGTTTACATGCTC GTCGGTCTCTTCGGACTCTTCCTCATCATCCTCTACCGCCACAAGTCACAAGCCTTCGTTCGCATCAACCTGGGTCTAGC CTTGTTCGTCGTTTCGCTGCTCGTTGTTCCTCTTATCGATGCGTTTTACATTAAGGGTCGGGTCGGGTTGTATGGCGGTT TCTACGTCACTGCTGGGGCGGTTGCACTTGCTGGTGTGGCTGATGCGTTGGTGCAGGGGTCTATTGTTGGCGCCGCCGGT GAGTTGCCGGAGAGGTACATGCAAGCTGTCATCGCTGGGACTGGCTGTTCTGGTAATCTACACTACTTTTCTTCATCTGG GGTTTTGCAATTTTCTATAAATGTCGTGACTTTAATTTAATTACTCTATGTTTGGAAAATTAGTCAAAATCAATTCTGGG AAGAAGTTTAGAAATGATTCTGATGAAATAGAATATGATCCAATCATGTTATTAACCAATAATGTTATTGTGGGGAGGAA GCAGCCATGCTGATGTTAATTTGATAGATGCATTGTTTGATTTTGTGTATGGTATGAGTAATGAGAGTTGGGGTGTGTTT CAGTATTCAGTGTTCAGTTTAGCCATTCTTTTATGTGGGGTATGGTTGATAGATAAGAGTTGTGGTGCGGTACTAATATA CCTTCTCTGGAAATAAAATCAGGGATCTAGGATGCTTTTGTATTGCTTCTGTGTTGGTATCAGATATGTGACATATATCT TGCTGCACTATTATGGTACATCGGTCTAATCCTCTGATCCCGGAAGTTGAAGAATTCTCTAATCTCAAATTATATTTATG TCAGATATGTACATGGGATAATAAGCATTTTTATGCTAAAGTTGTTAGGTCTATGACTTGGGTATCCCATGTTTCTCCTT TGCCTGCTCTTCTCGTGTTATAAGTTAATTAGAATCCTGTCTAGTTCCACATTTGAGGAAGCGAATTCAAACACACTATA AGAATAATCAAGGGGGCAACATGGAGCTTGATTCTTAGTCGAAACTCTGTCTTGTCTGTCAACTGTCAAGTGATCTCTTT CTTTGGCAATATCAACCAATTAGGCAGAGTTCACTTTGATTTGATTTCTTAATTTCTTGGTTATAGACTTATAGTTTACA GTCCCCTAAAGCACATTGGTATTCTGGTTTTAGGTTGATATACGTAATTTGTAAGAAATCATTGATGTGTTTCCTTGTTT GTGGATGTTTTTTACTTCAGGGGTACTTGTTTCTGTCCTGAGGATATTTACAAAAGCTGTCTACCCACAAGATGTCTCCG GCCTGCAAAAGAGTGCAAATCTCTACTTCGCTGTATCAATTGTAATTATGTTTGTGTGCATGGTTTTGTACAATGTTGCA CACAAACTTCCTATTATGAAGTACTATGATGAACTCAAGATTCAGGTTGTCAACGCTGATGAAGACATTGGTCCCCTGAC TGGATCGGACTGGAGGTCAACTGTATGGGATAATGTGGGAAGAGTCAAGTGGTACGGGTTCGGCATCATGCTCATTTATG TTGTGACTCTGGCTATCTTTCCTGGTTACATTACAGAGGATGTGCACTCTCAACTTCTAAAGGATTGGTATCCAATTCTG CTTATCACTGGCTACAATGTGTTTGATCTTGTGGGCAAGTCCTTGACTGCAGTGTACCTCCTAGAGAATGCGAAAATTGC AATAGGTAGCTGCATTGTGAGGTTGTTGTTTTTCCCTCTCTTTTTTGGGTGCTTACACGGTCCCGAATTCTTCCGGACAG AGATTCCCGTAACAATACTGACTTGCCTGTTAGGGCTTACGAACGGCTACCTGACCAGTGTATTGATGATTTTGGCCCCT AAAACTGTGAAGTTGCAGCAATCGGAGACTGTAGGGATTGTGTGTGTGTTATTCTTAGTTATTGGTCTGGCTTCTGGGTC TGTTATAGCTTGGTTTTGGGTCATCTGACCAAGCAACTTGTATTTAGGACTCAAAAACTTACATGTATTATGGCTTCACT CTAAGCTGGGGTGGGTTTCTGTATCTTGAACATTTAAAAATTTGTAAGCTTATCTGTTGATAATATTTCTCAATTCTAAT GAACTTTATTACCCTTGAACTGTATAGGAAGGAATGATTATTTTTCCTTAACTGTAGAATCACTATTAAAGGCACTTTGC TATTTCTACCATTTTAGCGATGAAGCAATGGTCC
CDS sequence (LotjaGi3g1v0546600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCACCGAATCGAGCCTCCTTCTACCGTCGGGTTCTGGTTCATCGCCGGCGAAGAAGGTTCCAGAAGACAAATG GCAGTTAGCATACATCATCTACTTCACCCTCGGCCTCGGTTACTTGCTTCCATGGAACGCTTTCATCACCGCCGTCGATT ACTTCTCCTACCTCTACCCCGACGCCAGCGTTGACCGCATCTTCGCCGTCGTTTACATGCTCGTCGGTCTCTTCGGACTC TTCCTCATCATCCTCTACCGCCACAAGTCACAAGCCTTCGTTCGCATCAACCTGGGTCTAGCCTTGTTCGTCGTTTCGCT GCTCGTTGTTCCTCTTATCGATGCGTTTTACATTAAGGGTCGGGTCGGGTTGTATGGCGGTTTCTACGTCACTGCTGGGG CGGTTGCACTTGCTGGTGTGGCTGATGCGTTGGTGCAGGGGTCTATTGTTGGCGCCGCCGGTGAGTTGCCGGAGAGGTAC ATGCAAGCTGTCATCGCTGGGACTGGCTGTTCTGGGGTACTTGTTTCTGTCCTGAGGATATTTACAAAAGCTGTCTACCC ACAAGATGTCTCCGGCCTGCAAAAGAGTGCAAATCTCTACTTCGCTGTATCAATTGTAATTATGTTTGTGTGCATGGTTT TGTACAATGTTGCACACAAACTTCCTATTATGAAGTACTATGATGAACTCAAGATTCAGGTTGTCAACGCTGATGAAGAC ATTGGTCCCCTGACTGGATCGGACTGGAGGTCAACTGTATGGGATAATGTGGGAAGAGTCAAGTGGTACGGGTTCGGCAT CATGCTCATTTATGTTGTGACTCTGGCTATCTTTCCTGGTTACATTACAGAGGATGTGCACTCTCAACTTCTAAAGGATT GGTATCCAATTCTGCTTATCACTGGCTACAATGTGTTTGATCTTGTGGGCAAGTCCTTGACTGCAGTGTACCTCCTAGAG AATGCGAAAATTGCAATAGGTAGCTGCATTGTGAGGTTGTTGTTTTTCCCTCTCTTTTTTGGGTGCTTACACGGTCCCGA ATTCTTCCGGACAGAGATTCCCGTAACAATACTGACTTGCCTGTTAGGGCTTACGAACGGCTACCTGACCAGTGTATTGA TGATTTTGGCCCCTAAAACTGTGAAGTTGCAGCAATCGGAGACTGTAGGGATTGTGTGTGTGTTATTCTTAGTTATTGGT CTGGCTTCTGGGTCTGTTATAGCTTGGTTTTGGGTCATCTGA
Protein sequence (LotjaGi3g1v0546600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFTESSLLLPSGSGSSPAKKVPEDKWQLAYIIYFTLGLGYLLPWNAFITAVDYFSYLYPDASVDRIFAVVYMLVGLFGL FLIILYRHKSQAFVRINLGLALFVVSLLVVPLIDAFYIKGRVGLYGGFYVTAGAVALAGVADALVQGSIVGAAGELPERY MQAVIAGTGCSGVLVSVLRIFTKAVYPQDVSGLQKSANLYFAVSIVIMFVCMVLYNVAHKLPIMKYYDELKIQVVNADED IGPLTGSDWRSTVWDNVGRVKWYGFGIMLIYVVTLAIFPGYITEDVHSQLLKDWYPILLITGYNVFDLVGKSLTAVYLLE NAKIAIGSCIVRLLFFPLFFGCLHGPEFFRTEIPVTILTCLLGLTNGYLTSVLMILAPKTVKLQQSETVGIVCVLFLVIG LASGSVIAWFWVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PIRSF | 12 | 413 | 402 | 1.6E-57 | ||
| PANTHER | 17 | 413 | 397 | 1.1E-221 | – | |
| PANTHER | 17 | 413 | 397 | 1.1E-221 | ||
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 31 | 55 | 25 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 67 | 84 | 18 | - | – | |
| Phobius | 67 | 86 | 20 | - | – | |
| Phobius | 87 | 91 | 5 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 111 | 121 | 11 | - | – | |
| PRINTS | 120 | 140 | 21 | 3.4E-5 | ||
| Phobius | 122 | 140 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Pfam | 134 | 412 | 279 | 4.4E-72 | ||
| Phobius | 141 | 159 | 19 | - | – | |
| Phobius | 160 | 178 | 19 | - | – | |
| TMHMM | 163 | 182 | 20 | - | – | |
| Phobius | 179 | 198 | 20 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 199 | 218 | 20 | - | – | |
| Phobius | 219 | 261 | 43 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 262 | 282 | 21 | - | – | |
| Phobius | 283 | 293 | 11 | - | – | |
| Phobius | 294 | 318 | 25 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 319 | 323 | 5 | - | – | |
| Phobius | 324 | 343 | 20 | - | – | |
| TMHMM | 326 | 345 | 20 | - | – | |
| Phobius | 344 | 354 | 11 | - | – | |
| PRINTS | 352 | 368 | 17 | 3.4E-5 | ||
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 355 | 377 | 23 | - | – | |
| PRINTS | 371 | 387 | 17 | 3.4E-5 | ||
| Phobius | 378 | 388 | 11 | - | – | |
| PRINTS | 389 | 413 | 25 | 3.4E-5 | ||
| Phobius | 389 | 412 | 24 | - | – | |
| TMHMM | 390 | 412 | 23 | - | – | |
| Phobius | 413 | 413 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi3g1v0546600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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