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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0548200 |
| Transcript ID | LotjaGi3g1v0548200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RETICULATA, chloroplastic; TAIR: AT5G12470.1 UvrABC system C protein, putative (DUF3411); Swiss-Prot: sp|Q94CJ5|RER4_ARATH Protein RETICULATA-RELATED 4, chloroplastic; TrEMBL-Plants: tr|I1L5L0|I1L5L0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0548200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96498644..96502561) extracted from Lotus japonicus Gifu genome v1.2.
AACTTTGATTAAGAAAACTGATGACGGATTCTGAGTTTAGCTCTTACATTCCCATAAATCATTCCCATAAATCGAGAATC TGAGAAAAACTTAATGGTGGACATGTTTTTTTTAGTGTAGATAAAACTTAATCATAATTTAAAATCAGTCCAGAGTCAAG TCTTCCCTTCATCAAGTCAATTTGTTTCTGCTCAATCAAAAAAAAATAATGGGAGAAGAGCGTGGTATATACGCGCCAAT TACATACGCGCCACATCTAGTTCCCTTTTCTGATTTCTCACCGAACTTTCCTCTCCTCTGCGATGGCCATGGCTTCCTTC TCCAACATCTCCGCGCGTTCCTTCTCTCTCCCAACCCAAAACCACCACTCTTCTCCGCCGCCACCAACTCTCACCATCAT ATCCCGCCGTCGACATTCTTCTCCGAGCCTCTTCACTTCCTGTGCTCCTCCTGTTTCCCGATCCCCACGTCCTCACTTTC TCCACTCAAAGAATTCCCGCATTTTTTCAGCCGGGAACGGCGGAGGCGGAACCGGCGGAGGAGACGGAGGTGGAGGTGGA GGCGGAGGCGGTGGCGATGGTGAATCGGAGGACAGGGATCGCAACAGAGGAGAGGCGCTGCTGGTTCTCGCGGAGGTCGG GAAGCCGCTGGAGTATTTGCCGGCTGATTTAGCGGCGGCGATGGAGGCGGGGCGGATTCCGGGGTCAATTGTGAAGAGGT ACTTCGAGCTCGAGAAATCGGCGGTGTTCCGGTGGCTGCTCAACTTCGGTGGGTTCAAGGAGAGGTTGCTGGCGGATGAT TTGTTCCTCGCCAAGGTTGCCATGGAGTGTGGTGTTGGGATCTTCACAAAGGCAAGCTTGCTACATTCACCTTATCAAGC ACAATTGATTTTTAATGTTTATTCTACTGTGTTGAATTGAATTGATGATTGATGGACCTACCTACCATTCACATTTTATA TCTTGTTGAGATTTCATACTTAAATTCATGGTCTTAAATTCTGCATTTGCTTCATTAATAGGATAATGAGAGGTCTCATA AATTCTGCATTTGATTCATTAAATTAGAAATTTTATTTTGTTCTTTTAGTTCTTATGGAGTTTTGTTTTCAGACAGCTGC GGAGTTGGAGAAGCGCAAAGAAAATTTCACAAAGGAGCTTGATTTTGTTTGTGCTGATGTGGTATGTCTAAGTTCTGTTG TGTGTCATATCACATTTCCCTAATAATCTTTGCTACAAAAGCTAACCTTTTGGAGAATTGATTTCCAGTCACAAAATCAA TTCTGCTAGAAGCTAGAGAGGGTAGTTTTTTTGTTGAAGATAACAAATTCTGAGCTTTTACATCACATTAACTCTACAAA AACACTTTTTCCCCATAAATGTATATAAACGTCAATGCATCACTTTCAATTGCTTTTACTATAATCAATTTTAACAAAAT CAATTGTTATAACGCTGATCCAAACACGCACTAAGTATTTTTGGATGGGTTCTGAAGCTCTAAAATCAAGTTTACTCGGT CCCAGTGTAATTTCAGAAACCCACATTTGATTAGAAATGATTATATGTAACTTTTGCAGTTGGGTTGCTACAAACTTGCT TTTGAAATTAAAGTTTTGAAAGAAACTTGACTAACTTCTCTTCTAATTCAATTTGAACCAAAATCAGTTTTACAAAATCA AGTTTATCCAAACTTTGTTTCAAAGGCTCACTCAAAAGTGTGGTTGGTTGAGTGGTGGGCACAAAAGCGAATGCATTTCT ACTCAAAATCTACACTTTAAAGCTTGCTAGAATTGATTTTGGATCCAAAGTTGATTTCTATATAAAGCATTGTCTAATCT TTTGTTGTCTTAACTTATTTAACGATTGACAGGTAATGGCCATTGTGGCAGATTTTATGCTTGTGTGGCTTCCTGCTCCC ACAGTTTCTCTCCGACCACCACTTGCTGTTAGTGCTGGAACTATTGCCAAATTCTTCTATGGCTGCCCTGATAATGCTTT CCAGGTTAACAGTTCACACTATTTACCTCACTCTTCATCATTTTTGTTTATTTTTTTATAAGCTTTGGTAAATGTTATAA TGTGTAAATATCACGTTCATTGGGTGATTAGGTTTAATTTTGTTGAAACTCAACAGGTGGCTTTGGCTGGAACCTCTTTT ACACTTATACAGAGAATAGGTGCTATAGTGGTATATACACTAGACCCTGAGAAATTCAAGCAGTTATTTTGTCATATTTT ATGGTTCTTTGACATCTTCATCTATTATGCAGCGTAATGGAGCAAAGCTTTTCGCAGTTGGGACTGGTGCATCACTGGTA ATTTAACATGCTTCTCTCTGCTTCCTTTTGGTTACTAATTTCAATTTTTGTTCAAGAGTATGCAGCTGGATGCTTTATGA ATCAAACCACGCATACTGTATTAGAAGATATGGTAAAATAAGTATGATGGAAAAGAAATAGTTTAGAATAGATACATCAT TAGAGAACATGAATTAGATATTAAATCTTACTATTAAGAACCCTCCTTTGAGGTCAGCTGTTACTAGTTACCCTGGAGCA TATTTTCCATATGGAGGCATACCGGTATGCAACTTTGCTTATGTGGAATTTTGTTTTCTTCGTGTAGTTGAGTTCACTGA GTGAGATAAGACCTTTGTTGTTGTTTTTGGGATATCTTTTCGTCAACTAAAATATGAGGCATAAGATCTTGTCAGTGTCT AAGGATCTCTCCCCCAGGGTGATTGTTGTATAATTGTAAGACTTTTAGAATATGCATCAATGGATGACGGATTACCTTCC CTTTTGCAGATTGGTACAGGAGTAACAAATGGCTTGATTAATGCACGAAAAGTCGTTGATAAGTCTTTTGCTGATGAGGC TGAGGACATACCAATAGTATCAACAAGTATCGCCTATGGGGTTTACATGGCAGTATCTAGCAATCTAAGGTATTCTTTTC AATAAACAAAACAAACATAATGCAAGGTTTCTGTTGGATTGAATTATGGAACAGAGTCAAATTGAAAATTCTGTCTTTGT TCTTTGCCAGGTACCAAATACTAGCTGGAGTTATTGAACAACGAATTCTAGAACCGTTGCTGCACAAGCACAAGCTCATG CTAAGTGCAATTTGCTTTGCTGTTAGAACTGGAAATACATTCTTGGGCTCACTATTGTAAGATTCTTGGTTTAACTTAAT ATACGGGTCTTTACAAAATTTACTATATTTCAGTTCTCATAATTAGTTACATGTATCTTCTACGAACAGGTGGGTGGATT ATGCTCGCTGGGTTGGGGTCCAGAAGATACGCGATTAGGCAATGGTGGGTTTTCAATTGTAATTTTTAAGATATTGTTTT CATGGGACCAATTGGGTCAAATCTTGGTAATTTTTTTTTTTGAACTTAATCTTGGTAATTGATTCATTCTGAAGTTTGGT GTGTTGTATTTTTTACTCCTCCCGTCAGCATAATTGTACATTCATTAAACGATACCGGAGGTCGCGTCACCAAGAAGCCC CATGAGTCTCCAATTATCACCATAAGCGATGACCATGGAAGGTGCTGTATCCATATTTCACAGCTAGCAGAAAGCTGCAG CTTGAGATGAAGTAGTAGAGTCACATTTTTGTATATGTTTATTGTCTTCCAAACATTTGAATGAAAACAAACTTGTTGTG GTTTTCTTCCCATTAGTAATCCATTTGCTTCTCAAAACATTAAAACCGATTGAGATTTATGTTTCAATACATTAATAAGA AAAGTGAGATTTTTATAGGTTCATGTTATAGAATGCAATTGCGAATTTTCATAATATGTTCATTCGAGAACTGATTTTAG AGAGAATCAATTCTGGAAGAAAACTTTTAAAGAAAAACGTGAAACAGCTTTAAACTAGCACAAAACTGTATGTTGCAA
CDS sequence (LotjaGi3g1v0548200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCTTCCTTCTCCAACATCTCCGCGCGTTCCTTCTCTCTCCCAACCCAAAACCACCACTCTTCTCCGCCGCC ACCAACTCTCACCATCATATCCCGCCGTCGACATTCTTCTCCGAGCCTCTTCACTTCCTGTGCTCCTCCTGTTTCCCGAT CCCCACGTCCTCACTTTCTCCACTCAAAGAATTCCCGCATTTTTTCAGCCGGGAACGGCGGAGGCGGAACCGGCGGAGGA GACGGAGGTGGAGGTGGAGGCGGAGGCGGTGGCGATGGTGAATCGGAGGACAGGGATCGCAACAGAGGAGAGGCGCTGCT GGTTCTCGCGGAGGTCGGGAAGCCGCTGGAGTATTTGCCGGCTGATTTAGCGGCGGCGATGGAGGCGGGGCGGATTCCGG GGTCAATTGTGAAGAGGTACTTCGAGCTCGAGAAATCGGCGGTGTTCCGGTGGCTGCTCAACTTCGGTGGGTTCAAGGAG AGGTTGCTGGCGGATGATTTGTTCCTCGCCAAGGTTGCCATGGAGTGTGGTGTTGGGATCTTCACAAAGACAGCTGCGGA GTTGGAGAAGCGCAAAGAAAATTTCACAAAGGAGCTTGATTTTGTTTGTGCTGATGTGGTAATGGCCATTGTGGCAGATT TTATGCTTGTGTGGCTTCCTGCTCCCACAGTTTCTCTCCGACCACCACTTGCTGTTAGTGCTGGAACTATTGCCAAATTC TTCTATGGCTGCCCTGATAATGCTTTCCAGGTGGCTTTGGCTGGAACCTCTTTTACACTTATACAGAGAATAGGTGCTAT AGTGCGTAATGGAGCAAAGCTTTTCGCAGTTGGGACTGGTGCATCACTGATTGGTACAGGAGTAACAAATGGCTTGATTA ATGCACGAAAAGTCGTTGATAAGTCTTTTGCTGATGAGGCTGAGGACATACCAATAGTATCAACAAGTATCGCCTATGGG GTTTACATGGCAGTATCTAGCAATCTAAGGTACCAAATACTAGCTGGAGTTATTGAACAACGAATTCTAGAACCGTTGCT GCACAAGCACAAGCTCATGCTAAGTGCAATTTGCTTTGCTGTTAGAACTGGAAATACATTCTTGGGCTCACTATTGTGGG TGGATTATGCTCGCTGGGTTGGGGTCCAGAAGATACGCGATTAG
Protein sequence (LotjaGi3g1v0548200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMASFSNISARSFSLPTQNHHSSPPPPTLTIISRRRHSSPSLFTSCAPPVSRSPRPHFLHSKNSRIFSAGNGGGGTGGG DGGGGGGGGGGDGESEDRDRNRGEALLVLAEVGKPLEYLPADLAAAMEAGRIPGSIVKRYFELEKSAVFRWLLNFGGFKE RLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWLPAPTVSLRPPLAVSAGTIAKF FYGCPDNAFQVALAGTSFTLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNGLINARKVVDKSFADEAEDIPIVSTSIAYG VYMAVSSNLRYQILAGVIEQRILEPLLHKHKLMLSAICFAVRTGNTFLGSLLWVDYARWVGVQKIRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 387 | 387 | 2.9E-192 | – | |
| PANTHER | 1 | 387 | 387 | 2.9E-192 | – | |
| Phobius | 1 | 198 | 198 | - | – | |
| MobiDBLite | 41 | 99 | 59 | - | – | |
| Pfam | 160 | 337 | 178 | 9.6E-68 | ||
| Coils | 185 | 205 | 21 | - | – | |
| Phobius | 199 | 219 | 21 | - | – | |
| Phobius | 220 | 309 | 90 | - | – | |
| Phobius | 310 | 331 | 22 | - | – | |
| Phobius | 332 | 351 | 20 | - | – | |
| Phobius | 352 | 374 | 23 | - | – | |
| Phobius | 375 | 387 | 13 | - | – | |
| Coils | 385 | 387 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0548200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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