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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0551900 |
| Transcript ID | LotjaGi3g1v0551900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box-like protein; TAIR: AT5G07670.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8VYT5|FB254_ARATH F-box protein At5g07670; TrEMBL-Plants: tr|A0A072UUB0|A0A072UUB0_MEDTR F-box-like protein; Found in the gene: LotjaGi3g1v0551900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96891393..96894896) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAAGACAAGATAAAAGAAGAAGCTCCCCCCTCAAGTTTCAGTTTCACTCCCTTTTTTGTCTGTTTTTGAGCTCATAC ATGCCGTTAGAAGAAAGAAGCATCCACAAGAAAACAAAAAGCAACCAACACACTCACAAGTAAATGATTGCAAAAGATTC AAAATCTCACTCACACAACAAAAAAGATCCAACGAGTGACGGTTGCGGCTCAACGCAACAGTAAAAAGTGACTGTTTAAA TCCCTAGGTTACAAGCGCGACTCACAGAGTCACACATTCTTAGAGAGATTTTTATCATTTATCATACTTGAGTCGGAATT GCGAGAACAATCTAACCTATAGACAGATAGAGAGAAAGAGAGGGAGAGAGACTCAAGTTTCAACAAACATTTCCGTTGGT GTTGGCCTACCAAGAAACTACATTTCAATTCAAATTAAATACTGTTTGTTACTTTCATTTCATACTACTAGATTGATTAC AAGAAGAGAACAACGACGCTGCACCACCGTCAACCGCCGCCACCACCACCACCACCACGATGGCGTTTCCACCAGAGAAT CAGAACCAGAATGAAAACCCTAACCCTAGCCCCATCCCTAGTCCTACATTGAAGAAGAAGAGAGGACCCAGGTGGTCCGA TATCTGGCTCAAGCACACCAAATCCAAACCCCTCAGCCCCATGGTTGTGGCGATGCAGCTTCACTCTCTTCCTTCTCACA AAGACAAATCTGACAACATCAACAACCCCTTAATCTCCAACTTCTCCATCATTGACCGAACCCTTCTTCTTACTGACGAG CTTCTTCTCAGGATCCTCGCCAAGCTCCCTGATTCTCAGAGGAACTCGAATTCCCTCGTTTGCAAGCGCTGGCTCAATCT CCAGGGTCGCCTTGTTCGCTCAATCAGGATCCTGGACTGGAACTTCCTCTTATCTGGTAGATTGATTCACAGGTTCCCTA ATCTCAACCATGTTGATTTGGTTCCTGGGTCTTTGATTTCACCTAAAAGCTCCTGCATTCTGATTGGGAATCGTGTTTTG TCGATGCATATCGATTCTGGGTCTTCCCCAAATTGGTGTTTTTGTGAGGAGAATATGCTTCCTGTTGAGGTCATTGATAA TGGGCTTAGTGCACTGGCTAGTGGGTGTCCCAATTTGCGCAGGGTTCAGGTTGTCGGTGCCAGTGAGATGGGTTTGCTGA GTGTGGCTGAGGAGTGTCCTACATTGCAGGAACTGGAGCTGCAGATGTGCAGTGACAATGTGCTTCGCGGGATCGCGGCG TGTGTGAATCTGCAGATCTTGAAACTGGTTGGGAATGTTGATGGCTTCTATAGTTCTGTGGTTTCTGATATTGGGTTGAC CATTTTGGCTCAGGGTTGTAAGAGGCTGGTGAAGCTGGAGCTTAGTGGGTGTGAAGGTAGCTTTGATGGGATTAAGGCTA TTGGTAAGTGCTGTCAAATGTTGGAGGAGTTGACCTTCTGTGATCATAGGATGGATGATGGATGGCTTGCTGCACTTTCA TACTGTGAGAATTTGAAGACCTTGAAGTTTCAGTCTTGTAAGAGAATTGATCAGAAGCCAGGGCTAGAGGAGTATTTGGG TTCTTGTCCTGCACTTGAACGGCTTCATTTGCAGAAATGCCAATTACGGGACAAGAAGAGCATTGCAGCTATGTTTTCTG TATGCAGGACTGCCAGGGAGATTATTCTTCAGGACTGCTGGGGATTGGATAATAGCATGTTCAGTCTTGCAGTTATTTGC AGGTAATGTCCTCTTTTACAGTATATGCAATCATACTCTAAACTTGTAGCCTACTTGTCCTGTTTAACTACCATTGGATT TATACCTGGCTGATGTTGAAATTTCGACTGTGTCATATTGTGTATGATAATTGTATTATAGCATAGCATCACATGTATTG ACAATCTGCTGTATAGGTCTGTGGGAAAATTTTTAAGGTTTATAAAGTGCAAATAACTTGCAGACTCCATGTGGTTGGAC TTGGGATGGATTTGGATTCCCTACATGTCAGTAATCTACCACATTCACATAGTCAAGCATTTTTAGCAGTCTAATCTTCA TAGGATGGTTCACATTTTAAGTTGTAGTAAGTAACTTGGTATAGTAACTTGGAATGTGAAATCCTATCTAAATCAGAGTT CAAAGGGCTCACTCGAAATGCTTGAAATGCGGAATGCGGGATTCCTCTTACTTCAGCCAATCCAAATCCGTGGTTGGAGT GATTCCATTGTGTGAGATTATTGTGAAATTCTCCTTTGACACCTAAATTCTGCTTTACTAATTAGCGTTGTTTGGATATC AGTTGCAACATGAATTGATTTGAATGATGAGCTAACTGATATATTACTAACACTTATAAGAAGGGCTCTATTCACTTTTT GTGCTGATGTGCGTGCTAACGTCCAGTGCAAACGGGTATCCCAACATAGCTTAAACTTATGGTTGCAAGAGATTGATGGT GTACTCCACTGAATTTACTTGTATCATTTAAAATTACAATTGCATCATCTTTTTTTTTGCATCTTGTTTAAAGGTGATTT TGCTATTTTAGTGGGAAATCTATATGGAAATGACTACAGCCTGCTGGAACTATCTGAGTTTTGCATTGATTGTTGTTGCT ATTTTTCAGGCGGGTAAAATTGATTTGCTTAGAAGGATGCTCATTGCTAACAACAGAAGGTTTGGAGTCTGTAATTCATT TGTGGAAGGAACTTCAGAGTCTTAGAGTAGTCTCATGTAAGCATATCAAGGACAGTGAAATCTCTCCTGCACTTGCAACC TTGTTTACCACCCTCAAAGAATTGAAATGGAGTCCAGACACCAAGTCACTACTTCCATCAAGACTTGTAGGGATAAGCAT AGGAAAGAAAGGCGGGAAATTTTTCAAAAAGACATGATTACCTAAATTCGCCATGTAGTTGTCTAATAAATCTCGGCCAT CGTCTTATAGCATGAATGAATCAGCTTCTCCTTTGCTAGAATCAATTCTGAAACCCAGAAATTACTTACAAAAGTTTTTC CTCCAGAATTGATTCTTCCTTCAGAATCAATTGTAGGAAAGGTTTCAATCATGCACTAAACTTATTATTTTCACTGATGT TAGTGAAAATTCTACCAATGTGTAATCAATTTATTACGGTTAACTTAGATGTTGACGGTGGAACATATTTCCTTTCGTTT CTTCTTCCATCAGACTAAAGAAGAAGCTTGTAGATGTAATTATGTAAAAGTCGAGTAAAAATTGGGTTCCTTGTTCCACT GCATTTTTCTGTTTTAACAAAGTGAAAGTTTAGTTAAAGCTTAAAGGAACATTGCTCCTGCTATCTGTGGACTGTGGGCC TATGGATGCTGTAAACTTTGTATGTGACGATTGTTGACAAGGCCAGCAATATTTAGACCATCTCCATCAAAATGAATGTC TTGTATGTAAATTCTAAAATATTTCCTTTATGAATACAAAATCAAAAAATTGTTCTAGAGTAAA
CDS sequence (LotjaGi3g1v0551900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTCCACCAGAGAATCAGAACCAGAATGAAAACCCTAACCCTAGCCCCATCCCTAGTCCTACATTGAAGAAGAA GAGAGGACCCAGGTGGTCCGATATCTGGCTCAAGCACACCAAATCCAAACCCCTCAGCCCCATGGTTGTGGCGATGCAGC TTCACTCTCTTCCTTCTCACAAAGACAAATCTGACAACATCAACAACCCCTTAATCTCCAACTTCTCCATCATTGACCGA ACCCTTCTTCTTACTGACGAGCTTCTTCTCAGGATCCTCGCCAAGCTCCCTGATTCTCAGAGGAACTCGAATTCCCTCGT TTGCAAGCGCTGGCTCAATCTCCAGGGTCGCCTTGTTCGCTCAATCAGGATCCTGGACTGGAACTTCCTCTTATCTGGTA GATTGATTCACAGGTTCCCTAATCTCAACCATGTTGATTTGGTTCCTGGGTCTTTGATTTCACCTAAAAGCTCCTGCATT CTGATTGGGAATCGTGTTTTGTCGATGCATATCGATTCTGGGTCTTCCCCAAATTGGTGTTTTTGTGAGGAGAATATGCT TCCTGTTGAGGTCATTGATAATGGGCTTAGTGCACTGGCTAGTGGGTGTCCCAATTTGCGCAGGGTTCAGGTTGTCGGTG CCAGTGAGATGGGTTTGCTGAGTGTGGCTGAGGAGTGTCCTACATTGCAGGAACTGGAGCTGCAGATGTGCAGTGACAAT GTGCTTCGCGGGATCGCGGCGTGTGTGAATCTGCAGATCTTGAAACTGGTTGGGAATGTTGATGGCTTCTATAGTTCTGT GGTTTCTGATATTGGGTTGACCATTTTGGCTCAGGGTTGTAAGAGGCTGGTGAAGCTGGAGCTTAGTGGGTGTGAAGGTA GCTTTGATGGGATTAAGGCTATTGGTAAGTGCTGTCAAATGTTGGAGGAGTTGACCTTCTGTGATCATAGGATGGATGAT GGATGGCTTGCTGCACTTTCATACTGTGAGAATTTGAAGACCTTGAAGTTTCAGTCTTGTAAGAGAATTGATCAGAAGCC AGGGCTAGAGGAGTATTTGGGTTCTTGTCCTGCACTTGAACGGCTTCATTTGCAGAAATGCCAATTACGGGACAAGAAGA GCATTGCAGCTATGTTTTCTGTATGCAGGACTGCCAGGGAGATTATTCTTCAGGACTGCTGGGGATTGGATAATAGCATG TTCAGTCTTGCAGTTATTTGCAGGCGGGTAAAATTGATTTGCTTAGAAGGATGCTCATTGCTAACAACAGAAGGTTTGGA GTCTGTAATTCATTTGTGGAAGGAACTTCAGAGTCTTAGAGTAGTCTCATGTAAGCATATCAAGGACAGTGAAATCTCTC CTGCACTTGCAACCTTGTTTACCACCCTCAAAGAATTGAAATGGAGTCCAGACACCAAGTCACTACTTCCATCAAGACTT GTAGGGATAAGCATAGGAAAGAAAGGCGGGAAATTTTTCAAAAAGACATGA
Protein sequence (LotjaGi3g1v0551900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPPENQNQNENPNPSPIPSPTLKKKRGPRWSDIWLKHTKSKPLSPMVVAMQLHSLPSHKDKSDNINNPLISNFSIIDR TLLLTDELLLRILAKLPDSQRNSNSLVCKRWLNLQGRLVRSIRILDWNFLLSGRLIHRFPNLNHVDLVPGSLISPKSSCI LIGNRVLSMHIDSGSSPNWCFCEENMLPVEVIDNGLSALASGCPNLRRVQVVGASEMGLLSVAEECPTLQELELQMCSDN VLRGIAACVNLQILKLVGNVDGFYSSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGKCCQMLEELTFCDHRMDD GWLAALSYCENLKTLKFQSCKRIDQKPGLEEYLGSCPALERLHLQKCQLRDKKSIAAMFSVCRTAREIILQDCWGLDNSM FSLAVICRRVKLICLEGCSLLTTEGLESVIHLWKELQSLRVVSCKHIKDSEISPALATLFTTLKELKWSPDTKSLLPSRL VGISIGKKGGKFFKKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 62 | 496 | 435 | 5.5E-234 | – | |
| PANTHER | 62 | 496 | 435 | 5.5E-234 | – | |
| SUPERFAMILY | 77 | 130 | 54 | 2.62E-5 | ||
| Gene3D | 82 | 371 | 290 | 1.4E-29 | ||
| SUPERFAMILY | 126 | 262 | 137 | 1.65E-6 | – | |
| SMART | 248 | 279 | 32 | 360.0 | ||
| SUPERFAMILY | 267 | 467 | 201 | 2.9E-25 | – | |
| SMART | 280 | 304 | 25 | 150.0 | ||
| SMART | 356 | 381 | 26 | 50.0 | ||
| Gene3D | 372 | 475 | 104 | 6.9E-7 | ||
| SMART | 407 | 432 | 26 | 36.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0551900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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