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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0552300 |
| Transcript ID | LotjaGi3g1v0552300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RFT1-like protein; TAIR: AT5G07630.1 lipid transporter; Swiss-Prot: sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog; TrEMBL-Plants: tr|K7LFK0|K7LFK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96973480..96979100) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGAAGGATACAGACCCTGCTAATCTATCGCGCACCTTCAAGTACCTATTAGGTTATCATTTTCACCACTATGCTAA TTTCAGGCTCTATTACAAAATTATCCAAAAATCATGTGTGCTGGACTTGATTCAACTTTAGATATATATTCGTCTATGCA TTTTATTTTTGTGTGTTACCTAACAAAGCTTTTACATCCTGCATTGTAAGTTAGCTGATTTGATTTTTTCTTGTTGGGAT ATTATGGCTCCAGCTACTCAGTTCTTGTCAAGGGGAATTCCATTTATATTCAATACATGGATTGTCAGGCATCTTACACA GGAGGACTATGCGGTAACTGTTTTTCCAAACCCCCATTAATTTTGTTTCCATCTTCTTGGTAGCTTCAGTAATTGATTTA CATTTTTGTTGCCTGCTTTGTTTCTGTACGAATCATTGGGGTGTCCTTTTATTTTGGTATAGTTATCAGTTTCATTGTCA TTATAAGTTGCGTCGCAAATTTGTGTGATGAAAATTGATTTGCTGTTATGTCACCTTTCTTTGATGCAGCTCTATGCGGT GCAATTTCATCTGTTTGTCACATGTGTCTTATTTCTTAGCCGGGAGGGCTTCCGAAGAGCATGTATGCGGATGGACATAA GACGGTGATCCCTTATGCTTTGCTAATTCTATTACGTTGAGATAGCCATGGGTTTAGGAAATTGTGCGAGACGGCCATGT GTTTAGTAAATTGTGCTTTGATGGGGAATTTGTTAGTTCTTTTGATCTTGTTAGGAAGCTTTTCATTGTTAGTGTCATAG TGAGTGCTAGTTTTTTTTATGATACTTTGGATAAACTTTGTTATCAGCCCGAGAAGGGGTATGTAGGAACTATGTATTAA ATAAAGTATTTTCACTTTGGTTGAAAGAACTAGTGAGAATTTGAATTGTGTTTCTCAATCCTTGGTTATATCTATATTTC TTTGATTATTTATAATATTATAAATCTAAAAAATATTTATAGTTCAAGTGATGGGAGTTAAGGATTTAAATTTGTATTTT TTTAATTCAAAATTTATTACTCTTGAGTGAGCTCCGTTTATAATATGTATTCTTCATGTTATAGTGATGGCACTTCAATG GAAGAAGATGTTGTGAAGCTAATGAAAGTAGTGTGGATGAGTCTCCCGCTTGGAATATTTATTACAATTGTTGCTTGCCT TCTTGTCTTCTGGTGGCAAGACATAAGTTATTCTACTCCACATGGGCAAGCTATCTTGATCAATGGTAATCTAATGAAGC TTTTTGTCATCTGTACCCCTTTTCTTCTTTTATGGATTATCTGTATGTCATAATCTGGTCTTCCTCAGAAAAAATGAAAC CAAAGCATCCTGGACTCTATAAAGTTCAAAGTATCACGTGATACAAACTTGGTGTTGCAAGAAATTTTATGCATGAAGTT CACTTGTTATGCCAGGTTGTGCTTGCATTTTGGAGCTTTTGGCTGAGCCTTTGTATATTCTTTCACAGAACTTGGTGTTG CTTGAATTACGGTTGATGGTTGAGACACTAGCTACTCTCTCACGGTGCTTGACGATGTACTTCCTAATTGTGAAGCAAAC TGGAATGGTAAGAGCTTAGTTATACTGAGCCACGTATTTTGGTCTTTAGTTTCCTTATCATTAAGCTGACAGTTTGTGCT TTTTCTGTTAATATTGTAGCATAAGAATGACAGGTTGGTTCTTGGATCAATTTCTACTTTGCTAGTTACTGTTGATTTTC TTTCTTTTTACAAACATTTGTTCAAACATATTAAAACAGTGCCACCAAAGTATTATATTTTTCTTTTGGTTGTTTGAATA ATTCATTGGTACATTCTTGATAAACTGAAGGGCAAAGGCTTTTCAGATGAATCAGACATGGCAACCCAATGCCAATAGCA AACACAGAAAGTTAAAGTTATAGAAAATAGTGAAAACAACTAAAATAAGATAGAAATCAATTTGGAATTAGATATTTATG CATCTCTATTATTTGGACTACTGAAACTTCACAGTTTGAATCTCTGCTGATGATGGGATTAATAAATCCACTTAAAATTG AAAAACCTAGAAAGAAGAGTTGTTAGAATTTGAATGGTTGAAACTCAATAATCCTAGCCATTTGTCTCTTTAATTGTCAA TGTTTTGAAGTTTAATGGGCACGCAAATAAAAAGGAATCTCCTAGTGCTTCGCTCATGTATCATGGAGATTATGCAATAG TGTTGCTTGTTAAAGCAATTTATTTCATTAATGTTAGGAAACATGCCACATTATCTCACGATTTTCAGTTCATTTGTTTC TTTTCCCTACCCTATATTTTCTAAGAACTATTTATTTAAGTGCATTGAATTTTTATGTATTATAGAGTTTGATGGACTAT AGTACTTTCTCCATGTTGATGCAACTGACTGAGAGTTGAATGATCGTTTCCAGGAAAAATCAATCATATTTGCTTTGTCA CAGTCTGCATATGGAGTCTGCTTATTTCTAGGTTATTGGGGCTATATGGTTCTTTTACGCAAATTTAGATATTCTTACCT TTTCCCATTCAGGTATAGTAATTTTGCTTTTGGCAGAAATATCTCTACTAGCTTGGTACCTGTTGCTTTTATCGTTTTCT TTTCCTGGAGAAGATAAAGGGCTTTAAAAATATTCTAACTGTTTCTGAATCTAGAGCTAGGCAACGGCAGCTCTAGGAGA GGAATTTGTATCTTGGAATTACATTGAGGTTGCTATAGCTAACCTTATGGTGATGACTTTTCGGCTATAAGAAGTGGCCT GACATGATTATGTAGGATTATAATAGGCTAGATTCTTTGAGGTCATTGCTGAGGGATCATATTTGCTAGATGCTACTCCT TGTACTCCTTATCAATGATAGAGAATTTCCTTTGTTTTGCCTGTGGATGTAAGCTTCTAGTTTGCTATCATTTGAACAGC GTAAAATTCCATGTCCATTTCAAATTTTCTTCTCTGTTGTGCACAACATTACCTCTGTTGTGTTATGGCAGAATAATGCT AGTCTTAACTGATATTGTCTTCTGATTGTGTTACACATGCTGTGATTTTCTCTTTATGTGATACATGATGTATTAAATAC ACTTTACAAGGAAAAATATAAACTAGAAGACATTAATCAACTTTATTTGTTTTGATATTTTTGCTTATTATACTATTAGT ATAACTATAGAGTTCATAAGTGACATAAATTTTTACAGAGAAAGGAAAGTGATTGGTTTTGACCGACAGCTGTCCAAAAT GTGTATGCTATTTACCTTTCAATCCTATCGGAAGTTGATCCTTCAAGAAGGAGAAAAAATGGTGCTTGTGTGGTTGGACA CACCATATAATCAAGCTGTATATGGCCTTGTGGACAAATTAGGTCAGATTTTTGTTGGGGTAGTTTTTGTTTTAAATCTT CTAATTGAAGTATAAGTGTTTTTTAACTTTATTGATAAGCATGATTAATCTTTCTTATCTAAACTTGCTTTTCTATTTTT TAAATCTCACCTTTCAGGTAGCTTAGTGGTGAGACTTCTCTTTTTACCTTTTGAAGAAAGTTCATATACAACATTTGCAA GGTTTGCTTCAGGTTCTATTTCTCTCTTGTTTACTTGATGTTTGAACTGGAAAACCTGAATGAAATGCCTTGCTCTTTTT CTTTATCTAATGTTTTTGCCTTATCCTTGCTTCTTTTTGTTTCTTCATTATAATGCATGTTGCTTTTGGTGTACCAATTC TTCATGTGCCTCTTATTTATCATTTCTCTCCCCTTCATTTACTTGGGCCGTTAGGTTAGGGTTAATTGAGTATCAGTCCT CCAAAATTATTATTATTATTTCCATTCTAGTTGGTAGTTATAATATGCTGAATCCCTTTCATATTTAATCATGAAGTTTA CTGTTTTAGTTGTGCATGCAGCTGTAGTGAAGCTGTTTTAAGTTTCACAAACTGAAATATTTTGGTCATTCTTGACAGGA CAATACCCAGGAAAAAGCAAGAAATTAGGAAACTGCTTGACAGAGTCCCTGAAGCTAGTTTTGTTGATTGGTATGTCGCG TTTCATTTAATTTCATGTCCGGGATACACATTTCTTAGTTTTCCTACTTCTCTGTGGCAAGTTATTTCAGGTTATTATTT GTAGTTGACTTAATTTGTATCTTGACAGTAAATTAGTTTATAGCTATATGAGATGCTACTAACCTTACCTCATATTGTGT TTGCTTGTAAAACACTGTTTTTAACTATTCGCTTCTCTTTATGTATTTTCTCCATGTTTTTTTTATCGTGAATAGAAAAG TAAAGACAACTTCAATCTAACTATTTATGTGACTATGTCTCTTCCCCTAGGAAAGATTAATAGGAAAGGAAAGAAGAATA TAGCCGAGTGAAAATTTCCTTTGGATTAACTTCTCTTACTTTCAAAAAAAAAAATCTTACTTTGGGCCAGGACCGCATGC CACAAGAAAAAACCTTCTTGAAATAAACTTATTGTGCTCGGTGAAAGAATATAACTGCGAAATTGTGCTTGGTGAAAGAT ATTTGTCAACACATACTTTGGTAGAGACAATAGTATTAAATAATCTCTTATGAGGATGCTATCTTCTGTAGATGTTCTCT TAATGAGGATGCTATATTATTGATATGAAAACTTATCCCAATTTGTGGTTGAATGTATACGTAAGTTTTTGAAGATCTGG TTAGTGCAAAATTTTTGGAGAATCAGTAATTTTCTCTTAGTAAAGATAACTGCAAATTTTTTTTTCTGGTCACAACTCAA TCATGCACAGCTGCATGACAATATCCAAGTTTAGGTGGCGTGTTTTAATTTTTCTCTCTTAAATTTAGCATTCTTATGCA GTGTTGAAGAGTTTTGTTTGGAATCCTAGAATAAGAAAGGGAACTTGGTTGAATCAAATGAGAAGAAATGAACAAGTTTA TCGTCCAAGGGTTTCCCCTTCACAAAAGATTTCTCTGCCTACACGTAACTATCAAAAGAGTTAGGTCAGTTAGTCCATTA GTTAGTTAAAGGAGATTAGTTACTTAAGATGTATAGTGGAATTTAGGATAGAGGGAATCATTCTTTGTTTGAAGTAGAAA TCCTTTGTGAAGGGGGAACCCTTCGAGGACAGACCTCTCTAGTCTCTCCTGTTCTTGATCTATCATTCAATAAATTGTTC ATTTCTAATCTTGTTTCAATCAATTTCCCATTTCTTTTACTGGAGTCCTGACGAGCTGTATGAATATCCTTCACTTTTTC CACCTTGGAAGAAATTTGGACATGTTTTGCTATAAGTTGCATGTTCTATTGTTCCTTTTTTGGTATTATATCCAGCTTTA TGTTTGGCAGGCCTTGTTTTTATTGCATTTGGTCCAAGTTATTCTTATTCACTCATTAGATTGTTGTACGGCCAAAAATG GAGTGATGGAGAAGCAGCAACTGCCCTCCGCTATTATTGCTTTTATGTCATTGTTTTGGCTATGAATGGTAATTCACTTA ATCCCTTATTGCTTAATTTTTTATGCTAAGTAATTTTATTGTTTACAGGTTATGACCATAGCATCTTCTGTTTTTGCTCT TCATATAATCTTTTTATTTGA
CDS sequence (LotjaGi3g1v0552300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAAGGATACAGACCCTGCTAATCTATCGCGCACCTTCAAGTACCTATTAGCTACTCAGTTCTTGTCAAGGGGAAT TCCATTTATATTCAATACATGGATTGTCAGGCATCTTACACAGGAGGACTATGCGCTCTATGCGGTGCAATTTCATCTGT TTGTCACATGTGTCTTATTTCTTAGCCGGGAGGGCTTCCGAAGAGCATGTATGCGGATGGACATAAGACGTGATGGCACT TCAATGGAAGAAGATGTTGTGAAGCTAATGAAAGTAGTGTGGATGAGTCTCCCGCTTGGAATATTTATTACAATTGTTGC TTGCCTTCTTGTCTTCTGGTGGCAAGACATAAGTTATTCTACTCCACATGGGCAAGCTATCTTGATCAATGGTTGTGCTT GCATTTTGGAGCTTTTGGCTGAGCCTTTGTATATTCTTTCACAGAACTTGGTGTTGCTTGAATTACGGTTGATGGTTGAG ACACTAGCTACTCTCTCACGGTGCTTGACGATGTACTTCCTAATTGTGAAGCAAACTGGAATGGAAAAATCAATCATATT TGCTTTGTCACAGTCTGCATATGGAGTCTGCTTATTTCTAGGTTATTGGGGCTATATGGTTCTTTTACGCAAATTTAGAT ATTCTTACCTTTTCCCATTCAGAGAAAGGAAAGTGATTGGTTTTGACCGACAGCTGTCCAAAATGTGTATGCTATTTACC TTTCAATCCTATCGGAAGTTGATCCTTCAAGAAGGAGAAAAAATGGTGCTTGTGTGGTTGGACACACCATATAATCAAGC TGTATATGGCCTTGTGGACAAATTAGGTAGCTTAGTGGTGAGACTTCTCTTTTTACCTTTTGAAGAAAGTTCATATACAA CATTTGCAAGGTTTGCTTCAGGACAATACCCAGGAAAAAGCAAGAAATTAGGAAACTGCTTGACAGAGTCCCTGAAGCTA GTTTTGTTGATTGGCCTTGTTTTTATTGCATTTGGTCCAAGTTATTCTTATTCACTCATTAGATTGTTGTACGGCCAAAA ATGGAGTGATGGAGAAGCAGCAACTGCCCTCCGCTATTATTGCTTTTATGTCATTGTTTTGGCTATGAATGGTTATGACC ATAGCATCTTCTGTTTTTGCTCTTCATATAATCTTTTTATTTGA
Protein sequence (LotjaGi3g1v0552300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKDTDPANLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLFVTCVLFLSREGFRRACMRMDIRRDGT SMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISYSTPHGQAILINGCACILELLAEPLYILSQNLVLLELRLMVE TLATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGVCLFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLFT FQSYRKLILQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFASGQYPGKSKKLGNCLTESLKL VLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRYYCFYVIVLAMNGYDHSIFCFCSSYNLFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| PANTHER | 5 | 375 | 371 | 9.6E-146 | ||
| Pfam | 13 | 371 | 359 | 5.9E-97 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 44 | 62 | 19 | - | – | |
| TMHMM | 45 | 62 | 18 | - | – | |
| Phobius | 63 | 91 | 29 | - | – | |
| Phobius | 92 | 114 | 23 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 115 | 125 | 11 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 126 | 145 | 20 | - | – | |
| Phobius | 146 | 156 | 11 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 157 | 175 | 19 | - | – | |
| Phobius | 176 | 186 | 11 | - | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 187 | 208 | 22 | - | – | |
| Phobius | 209 | 317 | 109 | - | – | |
| Phobius | 318 | 337 | 20 | - | – | |
| TMHMM | 318 | 340 | 23 | - | – | |
| Phobius | 338 | 356 | 19 | - | – | |
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 357 | 386 | 30 | - | – | |
| Phobius | 387 | 387 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid transporter activity | Enables the directed movement of lipids into, out of or within a cell, or between cells. | ||
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0552300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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