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LotjaGi3g1v0552400.4

Overview

Field Value
Gene ID LotjaGi3g1v0552400
Transcript ID LotjaGi3g1v0552400.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cryptochrome 2 (Photolyase-like); TAIR: AT4G25290.1 DNA photolyase; Swiss-Prot: sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2; TrEMBL-Plants: tr|K7LFK7|K7LFK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:96986454..96991329) extracted from Lotus japonicus Gifu genome v1.2.

AAATATTAAATGCAGTTATTTCCCTCTGCATCAATTTTCCTTCCCTAATGGCTCTCCTCAGTCTCCCGCAATTTCCCTCC CATTTTCCCTCACTTTCCTCCTTTCCAAACACCCGCATCTCTCCAACTCGCTGCCGTTGCTCAACCGCCACCGCCATTCT CTGGTTCAAGCACGATCTCCGAACCGATGACCACCCTGGACTCCTCGCCGCCGCCTCCAACTTTCCATCTCTCGTCCCTC TCTACGTCTTCGACCACCGTATTCTCTCACGTTAGTGCGCCCAAAACTCAACTCAACTCTCTGCGATGTGAAATCGAATC TCATCACGGTGTGGCTCTTGTTTTGCAGGTTTTTCCGATGAAACGCTGGAACTGGTTCTCTTCGCAGTTCACGATTTGAG GAAGTCGTTGCAGGATCGTGGTTCTGACCTAATGGTTAGATTCGGCAATGCTGAGAATGTGATTCAGCAACTTGCAATGG AGGTAGTTAGTTATTTTTTTCAGTTAGTTAATTTGCAGTTAGTTTCATCGGAATTCAATTTTCTTAGATAAATTCAATTC ATCGCTCAGGATGGAACAGGTTAAGGCTACCTGTGTGTTTGCGGAACAAGAGGTAGAGTATGAACTGCGCTTCCTCATCG ATGTTGTGAGCCAGCATTTGAAATCGGTCTCGGTTCCAGAAGGTTCTCCAGTGATTGAATTGTGGAACACTCCGTTTTAT GATGTAAAGGCAGGTAGCTCATTTGTGTTTGCTGTGTTCATTGGCTTGGTTGGTTGAGTTGATCATGTGAAATGTGGAAA TTATGTCGATGTGGTGATTGTTTTGATTAATTTTGTCATGTTTGATAATTGTATTGATTTCACTGTCACTAGGTTCTGCA AGATCTTCCTGCATCCTATGATGACTTTAAGAAACTTCGACTCCCAGTAACTGAACCGATTCAGCTGTCAAAATTACCTG GTGCAGAAATGGAACTCGACTGGGGTGAGTTCTGTGGTGGATGACTTTTCTTATCAGAATTCTTATTATTCTTCTTCTTT AATTTCCTGCATTTTATGATTTTGCTGAAAGTCATGTGATAATTGTTTATTGAATCAGGTGCTCTTCCTGTATATGATGA TATAAAGGAATTAATGAATAAAAACTCGTGGAAATCAGGAGAGAATTGGAAATTAATCAAGGAGACATCAGCTGAAACGT TATTACGCAGAGATATATTGAAATCGAGTGAGAGCAGTGAAAGAAGTTATAGCTTTAGACAGATACAGTCTAGGGAACCA AATGAATCTGTTTTTGTGACACGAAAAGGAAATGTTGTGGGAGGAGGAACAAATAATGCACTGAATGCATTGGCTGCATA TTTGAGATATTTAGAGGGAACAGCTCGTAATGACTGGCAAGAGTATGTAGTGACAACCCATTTTTTATCCTTGGATTTTG TTTTTTTATGTTATTTTAGTAAATGTAAATATTGTAAGCAGTCTGGAGGCCAAAAGTAGTAATAGCTGGTTTTTCATTAT TATCTTCATTTAAAGGAAAACTGTTTTCATTATAAAAAAAATCATCAGATTTCACTTTGTTTTCTGTTTCTGGTTTGTAA AAGTCTTGTATTACATTCTGTTCTTCTGTATCATTAGAAGGGCAGATGCACCTTGCCTTTGTTTACCTCAAAAGCTGCAA TGTTTGTGATCTACTTTCTAGTCTCCTCCTCCTAAGTGGTTAATTTGTTTGACATGACAATTTTCTTTTCTGTTCTTTAC GATACACAATTAACCTTTCTTTATTTGCTAAGCTGCTAAAAGGTTTCAACTGAAGTCATCATGTTAAAACAAATTTTACA TGCCATGAAATGCTCCTTTGTCTTAAAATTCGTTCAGGGTACATGAAAAAGTCCGTTCTTATGAAAGTCGGAATGGAGCA TCATTTATTGGACTCTTTGGTCCTGCCTTATCTCTTGGCATTATATCAAGAAGAAGAGTATATTATGAAGCTATCAAATA TGAGAAAGAACGGAATGCAGGATTCTTATCTCCCTTTGGATATTCAGCTGTCACAATCGCAGCAGCAATTGATGCTGTGT GCTCAAAGGAGGTGCTAGTTATAACAGTTATGCTGTGTTAGAGTACAAATTGTCATGTGCCTTATTGATTTGGTTATGTC TTATCAGTTAGAGTACTTGCCTTTACCATTTTCTTTTCTTTTCTCTTTTTAATCAATTGATTGATTTATCTATTTATTTT GGTGTCATAGTGGTATTGGCTTATGGCATTGAGAAATCATTTAAAGAATGATGGGATACACTCAACACGTATATGGAGAT GGAATGGATTTCTTGTTCAGGTATCAATTGAATGGGCTTTCGGTTAATGTTTGATTTCCAATTATATCCCCTTTAAAAGA GCCCTTTCTCAATGAAATGAGTTAAAAACCTGAAATACCTTATACAACAGCAGGTTTTTATAAAATCTACTGCTAAATTT TGTTTGAAACGCTTTTCTCAGTATACACTTGCTGGTGAAGATGGTCCTGCAGTTCTTCTTGTACATGGTTTTGGTGCCTT CGGGGAGCATTACCGAGATAACATACATGCTTTAGCTGGAGCTGGGAATCGAGTATGGACTATTACATTGTTAGGATTTG GCGAATCAGAAAAGCCAAATATTGTATATACTGAACTATTGTGGGCTGAACTATTAAGAGATTTTATTGTTGATGTTGTG GGTGAACCGGTCCATCTTGTTGGCAACTCAATTGGTGGTATGTGTTAACCATAAATTGGGTACCTTGCCCCAATATTTCT GCCTCCTTTTAACACGCATGCAAAGTAACTTTGCTATATGTAAAAAAAATTCATTTGCTTATTCATTTGATTAGTTCATC ATTTAATAATTACTTTTTTCATACTCCAGGTTATTTTGTTGCTATTGTTGCTCGCATTTGGAGTGTTTTGATCAAATCAG CTGTCTTGATCAACAGTGCTGGCAATATCATCCCCACATATACATCCATACCATTGCCCAGAGTAAGTGTAAGTGAGAAC AATGGAAGTTATGTTACACATGCGAGACACAATATGCTTTTTTTTCGATTGGCACTGTCTGATAGACTTACAATTTGATT CTTGCCGGTGTTAAGTTTTGCCATGTTTTATGTGAGGCAATCTACTTATTAGAAACTTAACATGTGTCTATGATGATAGT TCTATCCCTAAAATACCTAAGTCCAGGTTTACAAAGGTATATACTAGGAAGCATAAGAGAAGTGAGCCTTAGAAGGTTAC TTCTAATATAGCTGCTTAGCTGTTATGCTGATGTCAGCAATACAATTCTGTTAGACAGCTAGCAATTAGTATAAATAGGG ATTTGGTCATTCAGTTGAGGCAGTTATCGATTGGGTAGTGGTTTGGGAGATTCTGGATCTCGAATTCCAGTGGTTAGGGT TCTTGTTAGTGTTCTTGATTCTTCTGTGTAATTCCTGAGAATTCAACCTCAGTTCTTGAGGATTGAGTCTCTGTTTTCTT CAATAAACCAGTAGCATTTCTGTGAGTTCATCAGTCTATCATATACCCCCTCCATCATCTACCTATATTACATATGTTTA TCCATTACACAATAGAAATTTAAAATCTCAGTCTTCACAAAAAATGCATCCATGAGACCTTTGTGTTTTTCTTGAATGAA GGGAAGCATCCAAAAGTGTGTAATGGAACTTAAAGTTGGGATTTAGTAATTTAGTAAATACCTACAAACATTTCTCACTA TAATTTTATATTGTTTATAGCTTCAGTATGAGTACAACATAATTAGAATATCTATCTAAATTTTGCTTTTCTGTTTACAT ATAAAAATTCAGGACAGACAAACATCAGGGGCTTCCTGGTTGGGTTCTCGAATTCTTCTATTCTACTTGAGGCTAAGAAT TCAAGAAATAGTTAAGAAATGCTACCCAACTGTGAGTGTAGTTTTTGCCACTAGCTTCCAAATCTTATGTTTTTGTTTTC CGTTGATGGTTGTTGATACTGTGGCATTTTACTTTTGCAGAAGGTTGAAAGAGCAGATCATTGGCTCATAAATGAAATGC TAAGAGCAGTATCCTCTACTTCTATAGTATTTTTTCCCGCATTTGATATATCCATAAATAATTCCTATTGAAATCTCCTT TACATAATAAAAGTCATATGATCCTGGTGTAGATGTGGTCTTGGAAAGCATCTTTAGCTTTAACCTTTCCATACCTCTTA ACTATCTTCTTGAAGATGTCAAGGAAAAGGTTCTAATTATACAGGTATTCTAACATGGGTGTGAAATACTGTTGAAAAAA AATGATAATTAATCTGGCGTAGCCTTATATGTTATTGATTTCGTTATTGTCAGGGGATGAAAGATCCACTTTCTGACTCC AATGCCAGGGTGGCCATGCTTAAAGAGCATTGTCATGGTGTTTCAATTAAGGAATTAGATGCTGGTAACTACAGTTTTTA TATTTATTAAGTTGCCATTAGTTTTGTTTGTACTTCTTAATAGGGACCTTTTCTCCCTTGACATTACAGGCCATTGTCCG CATGATGAGGTGCCGGAGCGAGTGAATATTATCATTCATGATTGGATACTTGGTGTTGAAAGTAACACTTTGGCAGGGTG TCTAGTTTAATTTTTTTTTTTTTTGGTATCTAGCAACTGTGCATAATAAATCTTCCAATATGGTAAATTGTCCAGCGCTT ATTAATACACCAGTGCAAACAAGAGATTGCACCTGTGCATATTGTGCTATAAACTTGTAGAACTAGTATCCGAACCCGTG CGTCGCACGGATGAAATAATATGGAAAAAGAAATAAAAATGAAGTTAAGAGCAATAAATAATGTTTTTATATGGTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0552400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCTCCTCAGTCTCCCGCAATTTCCCTCCCATTTTCCCTCACTTTCCTCCTTTCCAAACACCCGCATCTCTCCAAC TCGCTGCCGTTGCTCAACCGCCACCGCCATTCTCTGGTTCAAGCACGATCTCCGAACCGATGACCACCCTGGACTCCTCG CCGCCGCCTCCAACTTTCCATCTCTCGTCCCTCTCTACGTCTTCGACCACCGTATTCTCTCACGTTTTTCCGATGAAACG CTGGAACTGGTTCTCTTCGCAGTTCACGATTTGAGGAAGTCGTTGCAGGATCGTGGTTCTGACCTAATGGTTAGATTCGG CAATGCTGAGAATGTGATTCAGCAACTTGCAATGGAGGTTAAGGCTACCTGTGTGTTTGCGGAACAAGAGGTAGAGTATG AACTGCGCTTCCTCATCGATGTTGTGAGCCAGCATTTGAAATCGGTCTCGGTTCCAGAAGGTTCTCCAGTGATTGAATTG TGGAACACTCCGTTTTATGATGTAAAGGCAGGTTCTGCAAGATCTTCCTGCATCCTATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0552400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALLSLPQFPSHFPSLSSFPNTRISPTRCRCSTATAILWFKHDLRTDDHPGLLAAASNFPSLVPLYVFDHRILSRFSDET LELVLFAVHDLRKSLQDRGSDLMVRFGNAENVIQQLAMEVKATCVFAEQEVEYELRFLIDVVSQHLKSVSVPEGSPVIEL WNTPFYDVKAGSARSSCIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.620
16 161 146 4.2E-30
IPR014729
PANTHER
PTHR47832
26 170 145 1.2E-60 –
ProSiteProfiles
PS51645
34 165 132 28.265
IPR006050
SUPERFAMILY
SSF52425
35 152 118 5.63E-28
IPR036155
Pfam
PF00875
36 148 113 1.6E-23
IPR006050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0552400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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