Domain Predictions — View

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SSF52425

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 28

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0011479.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome [Medicago truncatula] gi\|357489649\|ref\|XP_003615112.1\|	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF24 SSF48173 SSF52425 TIGR02766	19
Lj0g3v0286829.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1-like [Glycine max] gi\|359806517\|ref\|NP_001241002.1\|	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF24 SSF48173 SSF52425 TIGR02766 mobidb-lite	24
Lj0g3v0360289.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA photolyase [Arabidopsis thaliana] gi\|240256063\|ref\|NP_194259.4\|	Domains G3DSA:1.25.40.80 G3DSA:3.40.50.1820 G3DSA:3.40.50.620 IPR000073 IPR006050 IPR014729 IPR029058 PF12697 PS51645 PTHR10992 PTHR10992:SF754 SSF52425 SSF53474	13
Lj1g3v1965120.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome DASH [Medicago truncatula] gi\|357466479\|ref\|XP_003603524.1\|	Domains G3DSA:3.40.50.620 IPR006050 IPR014133 IPR014729 NON_CYTOPLASMIC_DOMAIN PF00875 PS51645 PTHR11455 PTHR11455:SF22 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52425 SignalP-TM_GRAM_POSITIVE SignalP-noTM_GRAM_NEGATIVE	16
Lj1g3v1965120.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Cicer arietinum] gi\|502132182\|ref\|XP_004501253.1\|	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014133 IPR014729 PF00875 PS51645 PTHR11455 PTHR11455:SF22 SSF48173 SSF52425	13
Lj2g3v2002610.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cicer arietinum] gi\|502160136\|ref\|XP_004511645.1\|	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR008148 IPR014729 IPR032673 PF00875 PS01083 PS01084 PS51645 PTHR10211 PTHR10211:SF0 SSF48173 SSF52425 TIGR00591 mobidb-lite	18
Lj3g3v2235780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: (6-4)DNA photolyase-like [Cicer arietinum] gi\|502147723\|ref\|XP_004506890.1\|	Domains G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR006050 IPR014729 PF00875 PS51645 PTHR11455 PTHR11455:SF9 SSF52425 SignalP-TM_GRAM_POSITIVE mobidb-lite	11
Lj5g3v1203330.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cryptochrome-2-like [Glycine max] gi\|356576533\|ref\|XP_003556385.1\|	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 PF00875 PF03441 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF24 SSF48173 SSF52425 TIGR02766 mobidb-lite	21
Lj5g3v1615820.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: blue-light photoreceptor PHR2-like [Cicer arietinum] gi\|502117786\|ref\|XP_004495945.1\|	Domains G3DSA:1.25.40.80 IPR005101 IPR006050 PTHR11455 PTHR11455:SF2 SSF48173 SSF52425	7
Lj6g3v0029980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi\|502122637\|ref\|XP_004497843.1\|	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF24 SSF48173 SSF52425 TIGR02766 mobidb-lite	21
Lj6g3v0029980.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi\|502122637\|ref\|XP_004497843.1\|	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF24 SSF48173 SSF52425 TIGR02766 mobidb-lite	21
LotjaGi1g1v0145900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|A0A0L9UYT7\|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	25
LotjaGi1g1v0145900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|A0A0L9UYT7\|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	25
LotjaGi1g1v0243300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|D0FZ12\|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	26
LotjaGi1g1v0243300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|D0FZ12\|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	26
LotjaGi1g1v0392600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT5G24850.1 cryptochrome 3; Swiss-Prot: sp\|Q84KJ5\|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|G7JCC1\|G7JCC1_MEDTR Cryptochrome, DASH family protein; Found in the gene: LotjaGi1g1v0392600	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014133 IPR014729 IPR036134 IPR036155 NON_CYTOPLASMIC_DOMAIN PF00875 PF03441 PR00147 PS51645 PTHR11455 PTHR11455:SF53 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF48173 SSF52425 SignalP-TM SignalP-noTM TIGR02765 mobidb-lite	27
LotjaGi2g1v0427200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Deoxyribodipyrimidine photo-lyase; TAIR: AT1G12370.2 photolyase 1; Swiss-Prot: sp\|Q9SB00\|PHR_ARATH Deoxyribodipyrimidine photo-lyase; TrEMBL-Plants: tr\|G7KG67\|G7KG67_MEDTR CPD photolyase; Found in the gene: LotjaGi2g1v0427200	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR006050 IPR008148 IPR014729 IPR032673 IPR036134 IPR036155 PF00875 PS01083 PS01084 PS51645 PTHR10211 SSF48173 SSF52425 TIGR00591 mobidb-lite	18
LotjaGi3g1v0359500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains Coil G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	17
LotjaGi3g1v0359500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains Coil G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	17
LotjaGi3g1v0359500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	16
LotjaGi3g1v0552400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha/beta hydrolase, putative; TAIR: AT4G25290.1 DNA photolyase; Swiss-Prot: sp\|Q9FFZ1\|PPH_ARATH Pheophytinase, chloroplastic; TrEMBL-Plants: tr\|K7LFK6\|K7LFK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552400	Domains G3DSA:3.40.50.1820 G3DSA:3.40.50.620 IPR000073 IPR006050 IPR014729 IPR029058 IPR036155 PF00875 PF12697 PS51645 PTHR47832 SSF52425 SSF53474	13
LotjaGi3g1v0552400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha/beta hydrolase, putative; TAIR: AT4G25290.1 DNA photolyase; Swiss-Prot: sp\|Q9FFZ1\|PPH_ARATH Pheophytinase, chloroplastic; TrEMBL-Plants: tr\|K7LFK6\|K7LFK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552400	Domains G3DSA:3.40.50.1820 G3DSA:3.40.50.620 IPR000073 IPR006050 IPR014729 IPR029058 IPR036155 PF00875 PF12697 PS51645 PTHR47832 SSF52425 SSF53474	13
LotjaGi3g1v0552400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 2 (Photolyase-like); TAIR: AT4G25290.1 DNA photolyase; Swiss-Prot: sp\|Q8LB72\|PHR2_ARATH Blue-light photoreceptor PHR2; TrEMBL-Plants: tr\|K7LFK7\|K7LFK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552400	Domains G3DSA:3.40.50.620 IPR006050 IPR014729 IPR036155 PF00875 PS51645 PTHR47832 SSF52425	8
LotjaGi5g1v0191200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|A0A151U5N9\|A0A151U5N9_CAJCA Cryptochrome-2; Found in the gene: LotjaGi5g1v0191200	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi5g1v0250100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photolyase/blue-light receptor 2; TAIR: AT2G47590.1 photolyase/blue-light receptor 2; Swiss-Prot: sp\|Q8LB72\|PHR2_ARATH Blue-light photoreceptor PHR2; TrEMBL-Plants: tr\|A0A151U4D0\|A0A151U4D0_CAJCA Blue-light photoreceptor PHR2; Found in the gene: LotjaGi5g1v0250100	Domains G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PS51645 PTHR11455 PTHR11455:SF2 SSF48173 SSF52425 mobidb-lite	13
LotjaGi6g1v0005600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi6g1v0005600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi6g1v0005600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	3.57