Transcript — View — Lotus Base

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LotjaGi3g1v0552500.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0552500
Transcript ID	LotjaGi3g1v0552500.1
Lotus japonicus genome version	Gifu v1.2
Description	mRNA, clone: RTFL01-46-D12; TAIR: AT4G25170.1 Uncharacterized conserved protein (UCP012943); Swiss-Prot: sp\|Q03EM9\|DDL_PEDPA D-alanine--D-alanine ligase; TrEMBL-Plants: tr\|I3SJQ6\|I3SJQ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0552500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:97010056..97013342) extracted from Lotus japonicus Gifu genome v1.2.

ATATGTCCCCGTGCATCGGCACGGGTATACATACTAGTATATATATATTCCTCATCGAATTTATCATATTTTTCTTTTGT TTGTCTATTAGAATTCTGAATGATAATAAAGTATAGTTTTAATAACATTCCTTCATTTCAACATCCACTCCGTGTGGTTA GTGGTTACCTTACAGCAGAGGAATAGGTCGTGGTCGCGGCGGCAGAAGCATGGGACGCGGTGGTGTTGGTGGTGGACGCG GCGGTAGCGGCATGTCAAAGGGTATTGGGAGAGCACTAACAAGGTTTAGGCTGCATAGAGGGACCGTATTACCTACTTTT TCCTCTGATGCTCCTAATTTTATCCTCAAACACAAATCATCAACAACAGCTGCTACCTGTTGTTCTTCCAGTGACAACAA GACTATACCCTTTTTGCACCATGTATTTGACATGCATGAGCATGACTCTGAGTGGGTTTCTGTGGATTCTTCTCAAGGTG TTGTTTGTGGGGTTAACCCCCCTTCAAAGAATGAGGTTGAAGATGCTGTCCTTACAATTCAACAGTATGCATGCTTATTC TCAATTCTCTATCTCTTTCAATTTCAGTTAAATACTGTGTCTGTGTTTTTGATTGTGTGTAGTATATTTCATTTCCTTCT TGCATGTGATGACGGATGAGAGGGTGCAAGTGTTTTTGTTAACATTTGGCCATTTCTAGGCTTTTATTTGTGTTGACATA TTTGTTTATCTACTCTCATTTGTTTCAAGAAGTTGGATGATTGACATATTTGTATTGAATTTTAGGCATCAAGATCTTAA TATATGTATATTTATAATTTTCCATCTCTCCAAAGTTTTCATGGATGTGATATGATAATGCATGGAAATGAGAGGAATCA CACTAGAAGGCTTACTAGTTACTAGAATCATGGTATAAAACATGATTTCCATATAAGTTAGTATGCCTAGTATTTTACTT TCTTTATATATTGTTGTTTTCTATTAGGCTTGTATAATGGCCTCATATAAATTTACGATATATGGGTTTGGACTTTTGAT TGTATTTGGTTTTGGACTTGTATTTAAGCTCATTAGGGATATAGTTTTATGGGCTTGTATTCCGGCCTAATTAGGTTGAG TTGGATTTAAACTAGTTGCATTAGAGGGCACGACGCCTTGTTAGGCCTGGTTTAGGCCCACTACACCTTATACCCACCTC TATGTAAGGGGTTCCTCTTTGTATTTTTCCGTCACCATTGGATTATAAGCTTTTCATTTATGGGGTGTAGTTTCTTTGGA GTTTTCTCTGTAGGAACCCTATACAGAATCATAAGTGTTAGACCCTTGTGGCTTTTCATCCCTTGATAATTATCAAGAGA TTCTTCTCTTGTGGCTTCTCTACACCTTAGGCTTATTACTCTCCATGAGTGTGGCACCAATTCAACCTCTCCCTCTCCAG CTTTTGATGTTTCTTCACTCCTTTTGGTGACTTCTACATCAAGTAAGCTAGATCGACAATAGTTCAAGAGGATTCAAGGC TTGGATGAGCATGGATCTTTATTAAGATATTTGTGTTTGTTCTGGACAGTGGACATGTAGCAGAACCTCTGACCAAACCT TCTAGTGCAGGCTTATAGTATAGTTGAAATATCATTTTCCAACCAAAAAGATTTTATGCAGGGCCTGTGTACTAATATAC ACATTATCCACCACAATTTTTAATAGCTATGATTCTCTATTGGAAATTCACAATTAATCCTTTACTTAGTTTCTGTTTTT CTCTTATTAATTTTGCTCTGGGATGATTTCATCACTTTTTATTTCTTTTGAATTCATATAACAGTGTTGTTCTCGAGATG TTTGATACGTGTCAGTATATGTGTGCAGGCTGTTTGGGGATCCTTTTCCGCGTCTTAGGGACAGACAGGACAACGAACAA GGGCATATCACAAAACCTGGTTCAGACAGACAGGACAATGAACAAGGGTATAACTCAAACCCTTGTTCAGTTGACCATGT TTCTGCAGTTGGTTCTGAGATAGATTGGACAGAACCTTCTTTTAGTCCGTATAATTCAATTTCAAATACGCTCCAAGTTA ATGGATATGATCGAGTTTACTATGCCCTTCATTTATTGCAGACTGATCCATCTGTTCAGGTGCAGTTTATGATCTATGAA TCTTAAGAAAAAAAGTTCCATTTTTGAATTCCATTGTCTTAGTATTTAAAATCTCACTGCAAAATAGCAATGACACATTG ACACGAGTGACAATTATAACTGTTGTCTTTTTACAGAGAATAGTGAGGTCATTATCAACTGATGAAGCTGTTTGGGATGC TGTACTGAACAATGAAGTTGTGCAGGAACTCAGGGAGTTAATCTCTGCAGGTTTGTATAAATATTTCATATGAACTTTTT TAAGATAGTGGCATCTTAGTTTGGTAATAGTATTTCATATGAAACAATTTTATGATAGTAGCATATTATTTTCTTAGAAG TTTGGGTTTTATGTGGCTTGGTTGATGTTCTTTTGTAGAAGTTTGGGTTGTATCTTGTATGTGATGGTGGAGATTTAGGT GAAATGAATTTGTTTTATTTTATTCAAGAATAGTTATAATGGTTCATTCTAATAATTGCTATTAGCTTTTGCTCAATTTC ATTTGCATTATTGTATTGATTTTATAGAATTATGATTTTCTTATTTTTCTGTTTTGTGTTAGACATTGGATGTCTAACAT TGCAATGACTCTTCCATTAATTACATTTAGCTGATCTGAATATGAAATCTGCAGGTGAAGAGAATGTGTCTCAAAGCTTT GATGGAAATGGAATATCTGATAGTGACTCACTTAATGCAGCAGATTCAAATGTTGTGATATGGATTTTAAGTACTGCCAA GTCCAAATTCATAGAAACAATTGAACAAATTACTAAGATAGTGACCAATTTATTTCAACGTGCATTCAACAAGACAAGTG TGGATGCAGGAGAGATTTATCTGTTTAATGAGAAGCTTAGAGCATCTTTCATGATCTCCATCATGGTAATGTTAATTGTG ATGGTTACTCGGCTCCATTGCTATGGCTCGAGATAATTCGACGACTTGACCACAATTCTCTGACTCTTAATTTGCAGACA ACATTCTGAATGAGATCCTTTTTGTTTTTTGGTCATTTTATTTCTGCTTTTGAGTAAATTTGCAGACAAGATGTATGATA CATTAATTTTGCATATTAATTGTGAATGTCTGCAGTTTATATCAATCCAGACTATGTGTTCTCTTATTTTGGTTGACTTC ATTTTTC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0552500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACGCGGTGGTGTTGGTGGTGGACGCGGCGGTAGCGGCATGTCAAAGGGTATTGGGAGAGCACTAACAAGGTTTAG GCTGCATAGAGGGACCGTATTACCTACTTTTTCCTCTGATGCTCCTAATTTTATCCTCAAACACAAATCATCAACAACAG CTGCTACCTGTTGTTCTTCCAGTGACAACAAGACTATACCCTTTTTGCACCATGTATTTGACATGCATGAGCATGACTCT GAGTGGGTTTCTGTGGATTCTTCTCAAGGTGTTGTTTGTGGGGTTAACCCCCCTTCAAAGAATGAGGTTGAAGATGCTGT CCTTACAATTCAACAGCTGTTTGGGGATCCTTTTCCGCGTCTTAGGGACAGACAGGACAACGAACAAGGGCATATCACAA AACCTGGTTCAGACAGACAGGACAATGAACAAGGGTATAACTCAAACCCTTGTTCAGTTGACCATGTTTCTGCAGTTGGT TCTGAGATAGATTGGACAGAACCTTCTTTTAGTCCGTATAATTCAATTTCAAATACGCTCCAAGTTAATGGATATGATCG AGTTTACTATGCCCTTCATTTATTGCAGACTGATCCATCTGTTCAGAGAATAGTGAGGTCATTATCAACTGATGAAGCTG TTTGGGATGCTGTACTGAACAATGAAGTTGTGCAGGAACTCAGGGAGTTAATCTCTGCAGGTGAAGAGAATGTGTCTCAA AGCTTTGATGGAAATGGAATATCTGATAGTGACTCACTTAATGCAGCAGATTCAAATGTTGTGATATGGATTTTAAGTAC TGCCAAGTCCAAATTCATAGAAACAATTGAACAAATTACTAAGATAGTGACCAATTTATTTCAACGTGCATTCAACAAGA CAAGTGTGGATGCAGGAGAGATTTATCTGTTTAATGAGAAGCTTAGAGCATCTTTCATGATCTCCATCATGGTAATGTTA ATTGTGATGGTTACTCGGCTCCATTGCTATGGCTCGAGATAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0552500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRGGVGGGRGGSGMSKGIGRALTRFRLHRGTVLPTFSSDAPNFILKHKSSTTAATCCSSSDNKTIPFLHHVFDMHEHDS EWVSVDSSQGVVCGVNPPSKNEVEDAVLTIQQLFGDPFPRLRDRQDNEQGHITKPGSDRQDNEQGYNSNPCSVDHVSAVG SEIDWTEPSFSPYNSISNTLQVNGYDRVYYALHLLQTDPSVQRIVRSLSTDEAVWDAVLNNEVVQELRELISAGEENVSQ SFDGNGISDSDSLNAADSNVVIWILSTAKSKFIETIEQITKIVTNLFQRAFNKTSVDAGEIYLFNEKLRASFMISIMVML IVMVTRLHCYGSR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	309	309	-	–
PANTHER	PTHR33625:SF3 View details on PTHR33625:SF3 Search for proteins/transripts with this domain View external data on PTHR33625:SF3	50	329	280	2.3E-71	–
PANTHER	PTHR33625 View details on PTHR33625 Search for proteins/transripts with this domain View external data on PTHR33625	50	329	280	2.3E-71	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	118	151	34	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	119	138	20	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	308	330	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	310	329	20	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	330	333	4	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0552500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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