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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0553600 |
| Transcript ID | LotjaGi3g1v0553600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT1G12260.1 NAC 007; Swiss-Prot: sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7; TrEMBL-Plants: tr|W9SFC6|W9SFC6_9ROSA NAC domain-containing protein 7; Found in the gene: LotjaGi3g1v0553600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97107932..97108617) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATGCATTTTCTCATGTCCCCCCAGGTTTCAGGTTCCATCCCACGGATGAAGAACTTGTTGACTACTACCTCAGGAA GAAAGTTGCTTCAAGGAAGATTGACCTTGATGTCATCAAGGATGTTGACCTTTACAAAATTGAGCCATGGGATCTTCAAG GTATGTTTTACTAATTTCATAAAGTAAAAAAATAAAACCGCTACGGCTATGTGCGAGTAGGTTCAGGGAGGCCAAATCCA TATTGTGAATTTAATGTAGACAGTTTTACCTTGCATTTTTGCATGAGGTTGATTCAACGACTCAAACATAGGATATATTT TAATTGTGAAATTAAGATATGTTTTTAACCTTTTATTTATTTTTTTGATTGAAAGCAGAGATTTGCAGAATAGGAAGAGA AGAGCAAAGTGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACACGCACAAATAGGGCAACAGCTG CAGGATTTTGGAAAGCTACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACCTAATTGGGATGAGGAAGACCTTAGTC TTTTATAAAGGTCGAGCTCCCAATGGACAAAAGTCTGATTGGATCATGCACGAGTATCGCCTTGAAACTGATGAAAATGC CACACCACAGGCAAGATTAATTAATTCTCAAACACCATATAATTAA
CDS sequence (LotjaGi3g1v0553600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCATTTTCTCATGTCCCCCCAGGTTTCAGGTTCCATCCCACGGATGAAGAACTTGTTGACTACTACCTCAGGAA GAAAGTTGCTTCAAGGAAGATTGACCTTGATGTCATCAAGGATGTTGACCTTTACAAAATTGAGCCATGGGATCTTCAAG AGATTTGCAGAATAGGAAGAGAAGAGCAAAGTGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACA CGCACAAATAGGGCAACAGCTGCAGGATTTTGGAAAGCTACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACCTAAT TGGGATGAGGAAGACCTTAGTCTTTTATAAAGGTCGAGCTCCCAATGGACAAAAGTCTGATTGGATCATGCACGAGTATC GCCTTGAAACTGATGAAAATGCCACACCACAGGCAAGATTAATTAATTCTCAAACACCATATAATTAA
Protein sequence (LotjaGi3g1v0553600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAFSHVPPGFRFHPTDEELVDYYLRKKVASRKIDLDVIKDVDLYKIEPWDLQEICRIGREEQSDWYFFSHKDKKYPTGT RTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENATPQARLINSQTPYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 141 | 138 | 6.6E-99 | – | |
| PANTHER | 4 | 141 | 138 | 6.6E-99 | – | |
| SUPERFAMILY | 5 | 140 | 136 | 1.44E-57 | ||
| ProSiteProfiles | 7 | 155 | 149 | 54.471 | ||
| Pfam | 8 | 135 | 128 | 1.0E-38 | ||
| Gene3D | 16 | 153 | 138 | 1.3E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0553600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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