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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0554400 |
| Transcript ID | LotjaGi3g1v0554400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT5G41840.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840; TrEMBL-Plants: tr|A0A061F788|A0A061F788_THECC F-box/RNI/FBD-like domains-containing protein, putative; Found in the gene: LotjaGi3g1v0554400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97220985..97221756) extracted from Lotus japonicus Gifu genome v1.2.
CCTTGTTTAATATGGTAGTTTGGCGGAGTATAGGATTCAAAATTGGTGAATATGGAGGAGGACGATGATATGATTAGCAG TTTACCGGACGAGATCCTGCGGCACATAGTGAGCTTTCTGCCAACCAGAGAAGCCTTCGCAACAACGGTTCTGTCGAAGC GGTGGAAGTCAGTGTGGCAGTGGGCTTCCGGCACATCCGCCTGTATCGACTTCGATGACGGCTACTACACCAAATCCAGA GATTCTTATCACCTCTTTATTAGGACCGTTTGTTTAGCCTTTGAGTTCTATCGCAACCTACCCCTGCAAAAATTCCGCCT TTGCTTTCGCTCTCCTGAATTTTATATACCTGCATGTGTATGGCAATGGCTTAACATGGATATGGATTTCATCTTAATTT TTAGTTGAACTTGTTCTGTACTAATGAATAGATATTGCAAATTTAAAGATATAGTGCTCAAGTGTGGGGCAATTGTATGC TAAATTTTGATCTTGTGTTAACCTCCATGGAATGATAGTGTAAGCTTCTCTCAAACAAGTGCAGTCACGCACAAAAATCA AATCTTTTGACATAATGAATTATTACTTGTATTTGGTATGAATTTTGTAGCAGAATTTGGTCAGAATTCAATTTTTTCGA TAAGATGATTCTATCTTTTCAATATGAAAGGGTTATGACTTGTACCAATAAAGCCCAATTTCACATTTTCCCCTAGACAC ATTCATACTTCTTTGCTGTTGAAGCTGTTTCTTATATAGTAGTAGTTTTCCC
CDS sequence (LotjaGi3g1v0554400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGACGATGATATGATTAGCAGTTTACCGGACGAGATCCTGCGGCACATAGTGAGCTTTCTGCCAACCAGAGA AGCCTTCGCAACAACGGTTCTGTCGAAGCGGTGGAAGTCAGTGTGGCAGTGGGCTTCCGGCACATCCGCCTGTATCGACT TCGATGACGGCTACTACACCAAATCCAGAGATTCTTATCACCTCTTTATTAGGACCGTTTGTTTAGCCTTTGAGTTCTAT CGCAACCTACCCCTGCAAAAATTCCGCCTTTGCTTTCGCTCTCCTGAATTTTATATACCTGCATGTGTATGGCAATGGCT TAACATGGATATGGATTTCATCTTAATTTTTAGTTGA
Protein sequence (LotjaGi3g1v0554400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDDDMISSLPDEILRHIVSFLPTREAFATTVLSKRWKSVWQWASGTSACIDFDDGYYTKSRDSYHLFIRTVCLAFEFY RNLPLQKFRLCFRSPEFYIPACVWQWLNMDMDFILIFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 107 | 104 | 8.0E-19 | – | |
| PANTHER | 4 | 107 | 104 | 8.0E-19 | – | |
| Gene3D | 4 | 112 | 109 | 4.3E-12 | ||
| ProSiteProfiles | 5 | 41 | 37 | 10.769 | ||
| SUPERFAMILY | 6 | 67 | 62 | 4.97E-13 | ||
| Pfam | 8 | 43 | 36 | 1.5E-8 | ||
| SMART | 11 | 50 | 40 | 0.0029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0554400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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