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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0555000 |
| Transcript ID | LotjaGi3g1v0555000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT4G10350.1 NAC domain containing protein 70; Swiss-Prot: sp|Q9SV87|BRN2_ARATH Protein BEARSKIN2; TrEMBL-Plants: tr|A0A0L9V9I3|A0A0L9V9I3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0555000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97259979..97263159) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCTTTTTACGATAAATAGCTTTAACCATTCCCGTAGGCGTAGTCACCGGCCGTCAACCCTTTCTAGTGTCACAATTG TGTAGTAATGGTGGCGTTGACAACCATGAAGGTATATAACCTCCATGCTTACAACCCCACGTACAAATTGATTGCTCATA GTTTCTTTTCAAAGTTTAAAGAGAAGAATAGTAGTACTTGTTATTGTTACATGTTATTGTTGTTTGTGTAAGTGATTGAG ATTTTAAATTTGGAGATTATAGATGGCTTCTTCTAATGGTGGTGTTCCTCCGGGATTTCGATTTCATCCAACGGATGAAG AGCTTCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAAAAGTTTGACATGGATGTTATTAGGGAGGTGGACTTGAAC AAGATGGAGCCTTGGGACTTACAAGGTAAAGTGGTACCATTATATTACTTCATTTAATTTAATGTTTGGTTTCCTCTAAG TTCAATCGTGGCTTTTCCTGTTTCTTCGTGTAATCCTTTTTTATTAATCACCACAATTGATTAACACCATTGATATGATT TGCATACTCTTTTGTGTTTCTTACTAATTAACTTAAGGATGAATTCAAGCAAAGATGACATACTCGGATGATTTATTTGA TTTTCTTCTCAGTTTTTTAGATTTTAAAATATTTTCATACACAATTTTTAAAACTTGATTTTTAGAAGAAGAAAATAAAA AACAATTTGAACAAGATAAGTTGAAAATTTAACTTGTTACTTGAAAATGAAAAAAAAAAAACTGAAAATATTTTTGAGAT ATTTTGAGAATTTTTAATAACTGAAATGAGAACTTTAGTTATAAGAATAAAATAGTTCATACCAAAAGTTTTTTTTTCTT CTGTTTTTAGAAACTAAAAATTTCTTTAATTTTTTTTTTCAAACATGCTCATCTCCATACCTTTAATTTGTTCTCTTCTT GGATGGCTACTCTTTTGTTTTCTTATTTGCAAAATATTTTATTACTCCATCCGTTCTTATTTATAAGAACCAAACTAACA TTTCACGCCCCTTAAGAAAGTGGTTGATAGTATTAAATTTGTTCAAATTTATCTCAACTTTTCAAATCCCAACTTATTTT TTAAAATTTATATTTATCATTAATGAGTTGCATAATGAAAAGAAAGAGAAGATTCTATTAAATAAGGGTATTGTTGCCAA AATATAATTAATGCATCTTGAAATTTGAATTGGTTCTTATAAAAATGACCAAGATACACTTTTATTTGGTTCTTATAAAT AGGAATGGAGGGAGTATAAGTTTTTTAAAAGCCAATAAATATTATTGATGATACAAAATGATCAGTAGAATTTGTACATA AAACACAAATACAAAAAATTAACCATCGTTCCTCAGATGCAGATGCATGGTTCATAGCTCCTACATCCTTATTAGTGCCT AGTTCACACACCTAAAAGGTGGGGGTAAGATTAGATGTTTGGGGGTGCGTTTAACAATTACCTTAAAATAACGGCAAGCG TATCAACTCTTTACCTAGTAACAGCATATAAAATCAGAGTTGATTTAGGCCACCTAATTTAATTAAGTTTTACCACCATT TGTTATATTTTTTCTCTCCATATATGTTAAACTTAATTATGTGTTAGAATTTTGTGTTTTTTATGATGCACAGAAAGATG TAAAATTGGATCAACCCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCTACAGGGTCAAGGACCA ATAGGGCAACAAACGCAGGGTTTTGGAAAGCTACCGGCAGAGACAAGTGCATACGAAATAGCTACATGAAGATTGGAATG AGAAAAACTCTTGTTTTCTACAAAGGCAGGGCTCCTCATGGACAAAAGACTGATTGGATCATGCACGAGTATCGCCTTGA AGATGCAAATGATCCTGAAGGAAATACCAATGTATGTACATGATCTCTCTCCCTCGAGGACATCATATCATATATCATAT TTATCATTTCTCCGTTTTATGGTCGTGTGTATGTATATGAAACATTTTCCATACATGTTTTTGTAGGAAGATGGGTGGGT GGTGTGCAGGGTGTTTAAGAAGAAGAACTTATTCAAGATTGGAAATAATGAAGGTAGCTCCGCTCACAATTCAGAGCAAC CAATCAACAACTCCTCAGGAGCCAATGCCCGCTCTTTCATGCACAGGGACAACCAATACTTGCTACTACAACAACAAAAC ACTAGGAACCCATCAGGGTTTGAGCTGGATAAACCTGAGCTTGGTCTTCATCACTATCCACACTTGCAAAACCAACCTCA ATACGCACTTTTCCAATCCCAACAACCTCTTCTTCAGAGCCACAAACCAATGGTTTACAATGACTATTCTTATGCATCAT CTCTACCCTCAGATCCCCCTCTCAAGCAGCTCATGACAAACCCTAGAGATTGTGAGAGTGGTAGTGATGGCCTGAGATAC CAAGTTTCAGAATCCGGTATGGAAGTCGGCTCGTGTGAACCGCCTCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATGAA TGAATGGGGGGTGCTTGATAGGCTAGTGACTTCTCATCTTGGAAATGAAGACTCAACTAAAGAGGTCAGGTTTGATGATG CAAACCCACAATCTGTCCACCAAATCAACCAACTTTCTTTGCGGGGAGAAATGGACTTTTGGGGCTATGCAAAACAATGA TTTCCATCCTCAAAATTATTAAGTACGTGCAGTTAGATGGTTCTAACCATTTAAATTTGGGTGCACCAAAGACATTATAT TTATTATTGTTATTATTACTTCGATCGTCTTCAACCTTTAAGGCTCGAGGTAAGAAAGTGAAAGTGGAAAGTTTATAGAA AAAAGCATTTGATGATTGCATTTTTGTATTTTTAATTTATTTTTTCATAAAATCTTTCCAATTTTGTATTCTTATCATCG GTCCTAAGGGCTGATATTAACAAAACCAATATTGTGTTAATAACATTGGAAATGGTTTGCTATGTTTTAGTTAATTTGGA GACAATATTTATTTTCAATTCATTATTTGTCAGGTACCATAATGTTTATTTTATGATTGTGTATTTCATAAGTTTAGTAT GAGAAAATGTATTTTCCTTGTATTATATGTTGATGACATTCTTCTTATTGCCAAAAGTGAT
CDS sequence (LotjaGi3g1v0555000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCGTTGACAACCATGAAGATGGCTTCTTCTAATGGTGGTGTTCCTCCGGGATTTCGATTTCATCCAACGGATGA AGAGCTTCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAAAAGTTTGACATGGATGTTATTAGGGAGGTGGACTTGA ACAAGATGGAGCCTTGGGACTTACAAGAAAGATGTAAAATTGGATCAACCCCACAAAACGAGTGGTATTTCTTCAGTCAC AAGGACAGAAAGTACCCTACAGGGTCAAGGACCAATAGGGCAACAAACGCAGGGTTTTGGAAAGCTACCGGCAGAGACAA GTGCATACGAAATAGCTACATGAAGATTGGAATGAGAAAAACTCTTGTTTTCTACAAAGGCAGGGCTCCTCATGGACAAA AGACTGATTGGATCATGCACGAGTATCGCCTTGAAGATGCAAATGATCCTGAAGGAAATACCAATGAAGATGGGTGGGTG GTGTGCAGGGTGTTTAAGAAGAAGAACTTATTCAAGATTGGAAATAATGAAGGTAGCTCCGCTCACAATTCAGAGCAACC AATCAACAACTCCTCAGGAGCCAATGCCCGCTCTTTCATGCACAGGGACAACCAATACTTGCTACTACAACAACAAAACA CTAGGAACCCATCAGGGTTTGAGCTGGATAAACCTGAGCTTGGTCTTCATCACTATCCACACTTGCAAAACCAACCTCAA TACGCACTTTTCCAATCCCAACAACCTCTTCTTCAGAGCCACAAACCAATGGTTTACAATGACTATTCTTATGCATCATC TCTACCCTCAGATCCCCCTCTCAAGCAGCTCATGACAAACCCTAGAGATTGTGAGAGTGGTAGTGATGGCCTGAGATACC AAGTTTCAGAATCCGGTATGGAAGTCGGCTCGTGTGAACCGCCTCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATGAAT GAATGGGGGGTGCTTGATAGGCTAGTGACTTCTCATCTTGGAAATGAAGACTCAACTAAAGAGGTCAGGTTTGATGATGC AAACCCACAATCTGTCCACCAAATCAACCAACTTTCTTTGCGGGGAGAAATGGACTTTTGGGGCTATGCAAAACAATGA
Protein sequence (LotjaGi3g1v0555000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVALTTMKMASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCKIGSTPQNEWYFFSH KDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYMKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPEGNTNEDGWV VCRVFKKKNLFKIGNNEGSSAHNSEQPINNSSGANARSFMHRDNQYLLLQQQNTRNPSGFELDKPELGLHHYPHLQNQPQ YALFQSQQPLLQSHKPMVYNDYSYASSLPSDPPLKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQEMGGGRGEGMN EWGVLDRLVTSHLGNEDSTKEVRFDDANPQSVHQINQLSLRGEMDFWGYAKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 167 | 161 | 1.24E-60 | ||
| PANTHER | 12 | 347 | 336 | 1.1E-120 | – | |
| PANTHER | 12 | 347 | 336 | 1.1E-120 | ||
| ProSiteProfiles | 16 | 167 | 152 | 57.946 | ||
| Pfam | 17 | 144 | 128 | 1.8E-36 | ||
| Gene3D | 25 | 172 | 148 | 1.0E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0555000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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