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LotjaGi3g1v0555000.2

Overview

Field Value
Gene ID LotjaGi3g1v0555000
Transcript ID LotjaGi3g1v0555000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT4G10350.1 NAC domain containing protein 70; Swiss-Prot: sp|Q9SV87|BRN2_ARATH Protein BEARSKIN2; TrEMBL-Plants: tr|A0A0L9V9I3|A0A0L9V9I3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0555000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:97260440..97262897) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTCTTCTAATGGTGGTGTTCCTCCGGGATTTCGATTTCATCCAACGGATGAAGAGCTTCTTCATTACTACTTGAA GAAGAAGGTGTCCTTTCAAAAGTTTGACATGGATGTTATTAGGGAGGTGGACTTGAACAAGATGGAGCCTTGGGACTTAC AAGGTAAAGTGGTACCATTATATTACTTCATTTAATTTAATGTTTGGTTTCCTCTAAGTTCAATCGTGGCTTTTCCTGTT TCTTCGTGTAATCCTTTTTTATTAATCACCACAATTGATTAACACCATTGATATGATTTGCATACTCTTTTGTGTTTCTT ACTAATTAACTTAAGGATGAATTCAAGCAAAGATGACATACTCGGATGATTTATTTGATTTTCTTCTCAGTTTTTTAGAT TTTAAAATATTTTCATACACAATTTTTAAAACTTGATTTTTAGAAGAAGAAAATAAAAAACAATTTGAACAAGATAAGTT GAAAATTTAACTTGTTACTTGAAAATGAAAAAAAAAAAACTGAAAATATTTTTGAGATATTTTGAGAATTTTTAATAACT GAAATGAGAACTTTAGTTATAAGAATAAAATAGTTCATACCAAAAGTTTTTTTTTCTTCTGTTTTTAGAAACTAAAAATT TCTTTAATTTTTTTTTTCAAACATGCTCATCTCCATACCTTTAATTTGTTCTCTTCTTGGATGGCTACTCTTTTGTTTTC TTATTTGCAAAATATTTTATTACTCCATCCGTTCTTATTTATAAGAACCAAACTAACATTTCACGCCCCTTAAGAAAGTG GTTGATAGTATTAAATTTGTTCAAATTTATCTCAACTTTTCAAATCCCAACTTATTTTTTAAAATTTATATTTATCATTA ATGAGTTGCATAATGAAAAGAAAGAGAAGATTCTATTAAATAAGGGTATTGTTGCCAAAATATAATTAATGCATCTTGAA ATTTGAATTGGTTCTTATAAAAATGACCAAGATACACTTTTATTTGGTTCTTATAAATAGGAATGGAGGGAGTATAAGTT TTTTAAAAGCCAATAAATATTATTGATGATACAAAATGATCAGTAGAATTTGTACATAAAACACAAATACAAAAAATTAA CCATCGTTCCTCAGATGCAGATGCATGGTTCATAGCTCCTACATCCTTATTAGTGCCTAGTTCACACACCTAAAAGGTGG GGGTAAGATTAGATGTTTGGGGGTGCGTTTAACAATTACCTTAAAATAACGGCAAGCGTATCAACTCTTTACCTAGTAAC AGCATATAAAATCAGAGTTGATTTAGGCCACCTAATTTAATTAAGTTTTACCACCATTTGTTATATTTTTTCTCTCCATA TATGTTAAACTTAATTATGTGTTAGAATTTTGTGTTTTTTATGATGCACAGAAAGATGTAAAATTGGATCAACCCCACAA AACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCTACAGGGTCAAGGACCAATAGGGCAACAAACGCAGGGTT TTGGAAAGCTACCGGCAGAGACAAGTGCATACGAAATAGCTACATGAAGATTGGAATGAGAAAAACTCTTGTTTTCTACA AAGGCAGGGCTCCTCATGGACAAAAGACTGATTGGATCATGCACGAGTATCGCCTTGAAGATGCAAATGATCCTGAAGGA AATACCAATGTATGTACATGATCTCTCTCCCTCGAGGACATCATATCATATATCATATTTATCATTTCTCCGTTTTATGG TCGTGTGTATGTATATGAAACATTTTCCATACATGTTTTTGTAGGAAGATGGGTGGGTGGTGTGCAGGGTGTTTAAGAAG AAGAACTTATTCAAGATTGGAAATAATGAAGGTAGCTCCGCTCACAATTCAGAGCAACCAATCAACAACTCCTCAGGAGC CAATGCCCGCTCTTTCATGCACAGGGACAACCAATACTTGCTACTACAACAACAAAACACTAGGAACCCATCAGGGTTTG AGCTGGATAAACCTGAGCTTGGTCTTCATCACTATCCACACTTGCAAAACCAACCTCAATACGCACTTTTCCAATCCCAA CAACCTCTTCTTCAGAGCCACAAACCAATGGTTTACAATGACTATTCTTATGCATCATCTCTACCCTCAGATCCCCCTCT CAAGCAGCTCATGACAAACCCTAGAGATTGTGAGAGTGGTAGTGATGGCCTGAGATACCAAGTTTCAGAATCCGGTATGG AAGTCGGCTCGTGTGAACCGCCTCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATGAATGAATGGGGGGTGCTTGATAGG CTAGTGACTTCTCATCTTGGAAATGAAGACTCAACTAAAGAGGTCAGGTTTGATGATGCAAACCCACAATCTGTCCACCA AATCAACCAACTTTCTTTGCGGGGAGAAATGGACTTTTGGGGCTATGCAAAACAATGA 

CDS sequence (LotjaGi3g1v0555000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTCTAATGGTGGTGTTCCTCCGGGATTTCGATTTCATCCAACGGATGAAGAGCTTCTTCATTACTACTTGAA GAAGAAGGTGTCCTTTCAAAAGTTTGACATGGATGTTATTAGGGAGGTGGACTTGAACAAGATGGAGCCTTGGGACTTAC AAGAAAGATGTAAAATTGGATCAACCCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCTACAGGG TCAAGGACCAATAGGGCAACAAACGCAGGGTTTTGGAAAGCTACCGGCAGAGACAAGTGCATACGAAATAGCTACATGAA GATTGGAATGAGAAAAACTCTTGTTTTCTACAAAGGCAGGGCTCCTCATGGACAAAAGACTGATTGGATCATGCACGAGT ATCGCCTTGAAGATGCAAATGATCCTGAAGGAAATACCAATGAAGATGGGTGGGTGGTGTGCAGGGTGTTTAAGAAGAAG AACTTATTCAAGATTGGAAATAATGAAGGTAGCTCCGCTCACAATTCAGAGCAACCAATCAACAACTCCTCAGGAGCCAA TGCCCGCTCTTTCATGCACAGGGACAACCAATACTTGCTACTACAACAACAAAACACTAGGAACCCATCAGGGTTTGAGC TGGATAAACCTGAGCTTGGTCTTCATCACTATCCACACTTGCAAAACCAACCTCAATACGCACTTTTCCAATCCCAACAA CCTCTTCTTCAGAGCCACAAACCAATGGTTTACAATGACTATTCTTATGCATCATCTCTACCCTCAGATCCCCCTCTCAA GCAGCTCATGACAAACCCTAGAGATTGTGAGAGTGGTAGTGATGGCCTGAGATACCAAGTTTCAGAATCCGGTATGGAAG TCGGCTCGTGTGAACCGCCTCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATGAATGAATGGGGGGTGCTTGATAGGCTA GTGACTTCTCATCTTGGAAATGAAGACTCAACTAAAGAGGTCAGGTTTGATGATGCAAACCCACAATCTGTCCACCAAAT CAACCAACTTTCTTTGCGGGGAGAAATGGACTTTTGGGGCTATGCAAAACAATGA 

Protein sequence (LotjaGi3g1v0555000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCKIGSTPQNEWYFFSHKDRKYPTG SRTNRATNAGFWKATGRDKCIRNSYMKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPEGNTNEDGWVVCRVFKKK NLFKIGNNEGSSAHNSEQPINNSSGANARSFMHRDNQYLLLQQQNTRNPSGFELDKPELGLHHYPHLQNQPQYALFQSQQ PLLQSHKPMVYNDYSYASSLPSDPPLKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQEMGGGRGEGMNEWGVLDRL VTSHLGNEDSTKEVRFDDANPQSVHQINQLSLRGEMDFWGYAKQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 4 339 336 1.1E-120
PANTHER 4 339 336 1.1E-120
SUPERFAMILY 7 159 153 4.58E-60
ProSiteProfiles 8 159 152 57.946
Pfam 9 136 128 1.7E-36
Gene3D 17 164 148 9.9E-60

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0555000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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