Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0555300.1

Overview

Field Value
Gene ID LotjaGi3g1v0555300
Transcript ID LotjaGi3g1v0555300.1
Lotus japonicus genome version Gifu v1.2
Description ethylene-responsive transcription factor; TAIR: AT5G11590.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3; TrEMBL-Plants: tr|A0A0L9V8B8|A0A0L9V8B8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0555300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:97286821..97288081) extracted from Lotus japonicus Gifu genome v1.2.

TCCACTAGCTAGACTGCATTTTAAAAGATGCAATGCTGTTATCAGTTCATGCTTATCTCTAAAAACAGTTCCAAATTCCA AGCAATTGATTCATCGTGGTAACATTACCCAGGCTCTGCACTTATCCAGATAAATTGTTCTGATTTATGGTTATCAAGCA AAATTCACTATTCAGAGGGTGGGTGCCACAGAAAAATGCCACCTAGCTAAATACACAAACAAACCACACTATCCATCTAA GTATCTATCTACATATATAAACCCCCTTCCTGAACCCACAAATTATACCTCTACTCCACATAACATTTGCTCTTCTTTTC ACTTCACTGAGTTGTTGAACACTTAATCATCACTCACTTTCATTCATGTCCATCACAGAAACAGAGGAAGCCCATTCTCA TTCTCAAGCTGGAAAAGCAGAAAACAGTGCAGTTGCATCGACGAAGCTGAAGAGTGAGTCCAGAATGTTCCGCGGGGTGC GCAAACGCAGCTGGGGACGCTATGTTTCCGAGATAAGACTGCCGGGTCAGAAAACCAGGATATGGCTCGGCTCATTCGCT TCGCCGGAAATGGCCGCTCGGGCATACGACTCCGCCGCCTTCTTCTTGAAAGGAGCCTCCGCCTACCTCAATTTCCCCGA ACTGGTTCACTCTCTGCCTCGCCCTCTCTCCTCATCCCGGAGAGACATTCAATCCGCCGCCGCTAAAGCTGCCGCTCTCC GCCTCCCCTGTTCTTCTTCGAAAACAGAGCATCACGATTCCATGGAGAAGAAGACGGAAGAGTGTTGGTGGGAGGAGTTG GGACAACATGATCCCACGACGTCGTCGTTTCATGATGCTCCTCTTATGAGCCCTCTCTCCACCTTTGGAGATTTCACATG GAATGATTTAGTGTTTAATTTCAATGATGAGTATGATGGCATTCTCACATCAACTCTTTTTTAGTTTAGTTTCCTCTGCA TTCTCCCCAAATTAGCTGTAAAAAGTTATGTGTATAAACATCACTCTGCTCTTTTCTTTTGCATTCTATCTAGTTTCTCT CAACAAATGTACTTCTCTAAACTGAACTTGCATCTAAACAACCACTGTATAAAATCACAAGTTTTAAGTTGAAGACCCTT GTATTTAATCAGTGCTATTTGTTACAATAAATTTTCTGACGAAATGCCAGAAAGACATTGTGAAGTGCTCTTGAAGAAAA ATCAGGACAAGGATGAATTTGATTGAAAAGAATCAGTATACCTTACCATGTAATATTCAAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0555300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCATCACAGAAACAGAGGAAGCCCATTCTCATTCTCAAGCTGGAAAAGCAGAAAACAGTGCAGTTGCATCGACGAA GCTGAAGAGTGAGTCCAGAATGTTCCGCGGGGTGCGCAAACGCAGCTGGGGACGCTATGTTTCCGAGATAAGACTGCCGG GTCAGAAAACCAGGATATGGCTCGGCTCATTCGCTTCGCCGGAAATGGCCGCTCGGGCATACGACTCCGCCGCCTTCTTC TTGAAAGGAGCCTCCGCCTACCTCAATTTCCCCGAACTGGTTCACTCTCTGCCTCGCCCTCTCTCCTCATCCCGGAGAGA CATTCAATCCGCCGCCGCTAAAGCTGCCGCTCTCCGCCTCCCCTGTTCTTCTTCGAAAACAGAGCATCACGATTCCATGG AGAAGAAGACGGAAGAGTGTTGGTGGGAGGAGTTGGGACAACATGATCCCACGACGTCGTCGTTTCATGATGCTCCTCTT ATGAGCCCTCTCTCCACCTTTGGAGATTTCACATGGAATGATTTAGTGTTTAATTTCAATGATGAGTATGATGGCATTCT CACATCAACTCTTTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0555300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSITETEEAHSHSQAGKAENSAVASTKLKSESRMFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFF LKGASAYLNFPELVHSLPRPLSSSRRDIQSAAAKAAALRLPCSSSKTEHHDSMEKKTEECWWEELGQHDPTTSSFHDAPL MSPLSTFGDFTWNDLVFNFNDEYDGILTSTLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR31985:SF96
12 182 171 2.4E-68 –
PANTHER
PTHR31985
12 182 171 2.4E-68 –
Gene3D
G3DSA:3.30.730.10
33 93 61 8.3E-26
IPR036955
SMART
SM00380
34 97 64 1.9E-31
IPR001471
ProSiteProfiles
PS51032
34 91 58 20.666
IPR001471
SUPERFAMILY
SSF54171
34 92 59 5.04E-19
IPR016177
CDD
cd00018
35 93 59 2.44275E-28
IPR001471
Pfam
PF00847
35 83 49 2.0E-9
IPR001471
PRINTS
PR00367
35 46 12 4.0E-8
IPR001471
PRINTS
PR00367
57 73 17 4.0E-8
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0555300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…