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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0555400 |
| Transcript ID | LotjaGi3g1v0555400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cobalt ion binding; TAIR: AT1G71310.1 cobalt ion binding protein; Swiss-Prot: sp|Q9FVV7|RD521_ARATH DNA repair RAD52-like protein 1, mitochondrial; TrEMBL-Plants: tr|I3T569|I3T569_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0555400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97291852..97296207) extracted from Lotus japonicus Gifu genome v1.2.
TAATAAGTGTGAGGCCCATTGGAGCAATTTAAAGTAAACCCAGTTGAGTTGAGAGAGTCGAAGAAGAAGAAGGTTGTGTT GTGTTGTGTTGTGTTGTTGAGAATGGCGTCAGCGTCTTCTTGTTCCCTGAAATTGAAAGACTTGAGCAGAGGAGCAATCT GTTGTTGGAAGTGGAATCGCTGTTACTCCAAGTTCAGCCATGGAATCGACGAGGGTGAGGATGCTTCGATTCCGAGTTCG GGAATCTGCAGGCCACTCTCTGCAATACTGAAGGAGCTCAACAAGAAAGTCCCCGATTCCCTAGTCAAAACCCGCCTCGA GAACGACGGCACACCCATCAGATACATTCCCTGGTATGCTACTTCCTAGAGTCCTTACACTCTCAGTTCCTCTTCATTCA TTTCACTTTTATTATTGTTGTTATTGCAGGCATGTTGTGAACCGCATTTTGAACTTACACGCTCCTGGTATGCTATGCTA TGCTATGCACTAACCCTTTTATGCTATTGCTAATTTGCTATGCTCTTTCAATCGCTTTCATGTTTTGTAATGCCCTTTTA TGCTGATGACTGATGAGTAGAGTGGTCTGGTGAGGTTCGAAACATCTCCTATTCTGCTGATGCCAAGTCTGTCTCTGTTG TTTACCGCGTTACCCTTTACGGGACTGATGCTGAGGTGCTTACTTCCCTTCCCTTCCCTTTCTTTGTTGTTGTTGTATAC TCACTGTTTGACATCATTGAAACTTTGTGATAGATTCTTAATCTTGCTTCATAAATCACATGGCTTACCTTACACTAACA TTGATTTTTTTTACTTGCTCTAGTATATTGATTCTTGCATTTTATTGTCTTTCCATGGAACAAATTTTGAGTACACCTAT AGTACTTATCACTCAATGCTCTACCTCTCACAAATTAGTAGTTATCCCCTTTTTTACTATCAAAAAACTTCTAAAAAGGG AAAAACTAACCATACAAGGACATGTTACCATGTTATAGCACACTACAAGACTATTGATTCCCCATCATGCATGTAGATCA AGCTATATACTTGTGAGGAACCTAACATTCATGGGGCTAGAGTGACAAATGACAAGAAAGTTAATCAACAACAAGGGTAA AAGAATATTAAACTAGCCATGTCTGTAGAGTCTAGATATATAGCTTTAAACATGTGAAAGTACTTGACTCTGGGGTTAAC TACTTAAGAATTGCCTGGCATTCTTGTCTGTGATGCTAAACTGCAATATGGGATAGCTTCAGATCTTTTAAAACTCAACA AAATTTACATTTAAATGACTGTAAGTTGCTTTTGTATCTTTGCCTTTTGTCTTTAAATACAATCATTATTGATTTAAACT TCTTGCTGTTGTTCTTGACAGTCTTTGGGTGGATATTAACTCTGTTCGTTCTGCCTTCACATTATTTACATTCTGTTCTA ATTATCTGCTAAAGCCAGTTTATTTCTCTAGATTTTTAGGGAATCAACTGGTACTGCTTCAGTGAGTGACACAAGTTATG GAGATCCTGTACAGAAGGCTGAAGCAATGGCATTTCGCAGAGCTTGTGCACGCTTTGGGCTGGGGCTCCATCTTTATCAT GAAGACGCACCATAATCTAATGTTCTGCTACTCAGGTTTGATCTCTTGGTAATTTGCTACTGTTTGCTATACTGAATTTA CGGAAGGATCGCCTTAAATGAGATCATGTAGATTAGTTAGTACTTAGTAGTAGAAGGGAAGCATTTTGTTACTTGTCACT TGATTGTGGCCTACTAAACTTGGACCCTCTTGTGTTATGTTTGCCATATGTTTTATCTTTTTGGAGTCCTCCATTTATCT GGTTATTTATTATGGCATCATTTCAACCTTATAACACATAGTGGAGAAAACTCTAGTTCATACGCAGCGGGGAGAATTCA TATAGTGCTGCACTTTTGATGTAAAACAGTAAAAATATTTGATGTAGAACAGTAAAATACTAAAATTATGCTCAAAATCT ACTTGCATTGTAGTTTATTGACTACTTGTTGAACTTTTTAATTTCTTAAAAGATATGTATTAATTTGGATTTTATTTTGT TTTGGGTGAGGAACATAATCTCATTCATAGTGGTCACTATGAAATACTCCCTCCCTCTCTTTCAAAATAATAGTTTAGCA AATCAAGGTGAAGTGCTTGAAACGCAGGCCTCTTTTTTTTTTTTTTTTGACAAAATAAACGCAGTCCAATTCAGAGCGTT GGCAAAAAAGGCTTGTTTTAATTTTTTGTTTTGAAGGTTGTAATGTATGTTTGCATTGATGCATATAGATATTCAATCAA TAAAGATGTATTCAGCCTTCCACTTGTAAAAAAATAAAATAAAGATGTATTCACACACTGAATAATAAAGTAAGAGCATC TCCAATGCTAGTTTTTAATTCTTAGTTCTTAGCACTATTCATGTGGGCCCGTACTGCCATATGTGCTTAAGTAACTCTCA AGCAATTTTGCTCCAACCATGAGTTATTAGTTCTTAGGACTATTTTTTTGTCCTACCAACCACATTATTTTTATTTTTAT TTTCATAAAGTAATAAAACAAAACTCATAAAGTAATTTGAATGGGAGAGAAAAAATATTTTTTTAGATTAAGAACTCAAA AAGTAAAACTCCTTATATTAAGAATCTAGTTCTTATTTTTAAGAACTAAAAACTCCACGTTATCCCCTCTAATAGTTAAG AACTCAGTTTTTAGTTCAAAAATAAGAAATAAGAACCTTACAATAAATGTTTGAACAAGTAATTGAATTCATAAATGGAA TTAGTGATTGGGCTGTCTGCAATATGTAGAGAGAAAAAAAGAGTTGGTGTGCGGTGTCAATGTCATGGTTGGTTGGGTGA GTTGGTCATACACTTCACACTTTCTCTGAGTCTTCATCCCAAAGTTGGAGACAGCTGCTTCTACCCCACCTGCCAGTGCC AGATAGATAGATACTTATAGAGTAATGTTACTGACACACCTCTCTTTTGAGGTGTGTGAGGTGGAATAATGAGAGAGATA GGAAGAAAAGAAAAAGTAAGGGAGAGAAAGTATGAGATGTGATAGATGATAAGAGGAGAGAGATAGAAACAAAAAGAGGT GGAAATGAAGTGTTTTAAAAATGAGGTGTGTATATATCATTACTCGATACTTATACTTTACAATTTTATTACTACTATAT CATATCATATCTTTAGTTTATGATATTTCTTCTTTCTTTGTGTACCTCATCATCCCTCCCAACCCAACCCTTGAATTGAT ATTGATATATGAATAAAAGACCCCACATTGTTTGGTTATATCACTACATTGCCATCCCGTTCATTTGCCGCCATAATAAT AACTGTCTCACCCACGTGACTCCCAACTTGCGCGCGCGCGCGAGCGACTCGAAACCTTATAATCATCAACGGACAAGGAT CAGAAATGACACACCAACCATGATTGCTGCACTTTTTTTCTAATTCAAAATAAGAGGTCATAGTTAGCATTCATTTTATT CAATCAATTAAATACGAAAATCAATTTTTTTTCTTCATAAAATTATTACTTTAATTAATAACACTGCAAACATAGAGCTG GAATTTTTATAAATAATTTGCATGTTTCAAAAATCTCGATCTATCATAAAATTATGGTGACTACTGACTAGGTTACATTG CATGACATATAATGATTGCCATAGAGTCAGGCCTTCATCTTGAAAAATCATAAACTTAACTTTACAGTTTATTCATTTAA GGATAAGCATTTCGGCATATTTAAATTGGGTGAAAAATAAAATAAAAACTGGATAAAATGATTAAAGACAAAGACCAATT TTGAATTATTATTTTTAGTTAGTAAAGTATAATAAAATCAAGAGTAATCTAATATATACTACTATTTAGTTGTAACCAAA AAATATACTATTATATAGTATGTAATATTCTGCTGTACCCCACCCGTGATTTGGATATACTTTTTTTCTTTCTATAATTT AAAATTCTAGAATCCAGATTAAGGATGAGAAAGCAATCGGAGTATCGAACAAGCAACAACAACCACAATATATAACCTCC ATTTTTTGCCTTTTTGGTGGAAGCAATTTGCTGAGAGAGAGAAATAGAAATTTCGGATCAGAGGGACCACCACAATACAT ATGTAGTATTTTTTTTTTGAACGGACATATGTGGTAGAGACTAGAGACTAGCTAGAGAGAGATTGATGCAGCGCTCACAT GAGATTAAGACCCCGTTTGGAAGAGCTTATTTGAGTTTATCTGATAGCATAAACGCTTATGCCAGTGTTTGAGAGAGCTT ATGCAAACAGCTTATGGTCCCGTTTGGATAAACAGC
CDS sequence (LotjaGi3g1v0555400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAGCGTCTTCTTGTTCCCTGAAATTGAAAGACTTGAGCAGAGGAGCAATCTGTTGTTGGAAGTGGAATCGCTG TTACTCCAAGTTCAGCCATGGAATCGACGAGGGTGAGGATGCTTCGATTCCGAGTTCGGGAATCTGCAGGCCACTCTCTG CAATACTGAAGGAGCTCAACAAGAAAGTCCCCGATTCCCTAGTCAAAACCCGCCTCGAGAACGACGGCACACCCATCAGA TACATTCCCTGGCATGTTGTGAACCGCATTTTGAACTTACACGCTCCTGAGTGGTCTGGTGAGGTTCGAAACATCTCCTA TTCTGCTGATGCCAAGTCTGTCTCTGTTGTTTACCGCGTTACCCTTTACGGGACTGATGCTGAGATTTTTAGGGAATCAA CTGGTACTGCTTCAGTGAGTGACACAAGTTATGGAGATCCTGTACAGAAGGCTGAAGCAATGGCATTTCGCAGAGCTTGT GCACGCTTTGGGCTGGGGCTCCATCTTTATCATGAAGACGCACCATAA
Protein sequence (LotjaGi3g1v0555400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASASSCSLKLKDLSRGAICCWKWNRCYSKFSHGIDEGEDASIPSSGICRPLSAILKELNKKVPDSLVKTRLENDGTPIR YIPWHVVNRILNLHAPEWSGEVRNISYSADAKSVSVVYRVTLYGTDAEIFRESTGTASVSDTSYGDPVQKAEAMAFRRAC ARFGLGLHLYHEDAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 174 | 148 | 1.7E-83 | – | |
| PANTHER | 27 | 174 | 148 | 1.7E-83 | ||
| Pfam | 53 | 172 | 120 | 1.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0555400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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