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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0555500 |
| Transcript ID | LotjaGi3g1v0555500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein prune like; TAIR: AT5G16910.1 cellulose-synthase like D2; Swiss-Prot: sp|Q5E9Y6|PRUNE_BOVIN Protein prune homolog; TrEMBL-Plants: tr|K7LS81|K7LS81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0555500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97308362..97312848) extracted from Lotus japonicus Gifu genome v1.2.
GAATGAGACATGTGTTTTCGGAGTCTCCAACAATTCCCATGTTGTCTTCTTTTTCTTGTTGTGTACCTTATTTGCCGTCT CCTAAGCTCTTTATTTTTCAATGTTCCCACTCTTAAATTGTTAACTCCACCCACCATGAAGCCTGCTGCTGGAGCATTTG CCCCAACTCATCAGGTTAATCTTTCAATCATTCATGGTTGCTTTCGTCTGTGAATTAACATTTATTACTTCAAACCTCTT TATGTTAGCTTAGTATTAATTTCAGTATCCAACTAGAACTAGGCCTGTTTCAAGCTGCTAGATATGATTTTAATTTTGGT TTCTTTAGATTAATCTGCTTCATTCCTGTTATGTTTTTGGCCAAATAGTGGGCAATAGTTTAGTCAGGGTTGCTTCTTTT TAAGGATTCATTACATCTGTCTACAAGAGAAAAAGCATTCTTACAATCAAATGGAGGCAATAACAAATGAATCATCACTA ATGAATTTATTTCAATGTCTTTTTCTTTCTCATTCACAATTGTTCTAGTCTAGTTTCATTTCACTTTTTTATTCATGTGC AGGAACCGTATATTCGTACCAGAGAGAATCTATACTTTGATGGCCTTCTAAGACCCTTGAAACCTCAAGCTGGAGCTAAT AGCAGCAACATTCTCATATCCGTATCAGAAAGTGGTGAAAAGGAATTTGTGTCAAATATGTCTGCAGAGGTTTTCGATCA CAATGACTTATCTGAACATTCTTCATCTGAGAGGTGGTTGGAGACTAGTACAATTGCTCCATTTATACAACTAGATATCC AATCTGGTCTGAATGAAGTAGCTAATCTTAGAAGTGGCCAATGCCATAGCCCAAAGACCCCTCAAGTTGATGAAGAGCAT CAGGCTTTGCAATCACCTGCAATACTCAATACCGAAAAGACATACACTGTTACCCGAAGAAAAGAAAAGCTATCAAGTAT TTCACTTCCACTATCTGCAGCTTCATACTATAATGGAGTATCACCAGAAATGGAAATCGTTGAATCTTGTGAAAGCATTG ACAAGCTAAATGCATATTTGAAAGCAAGAAAGGATGATGTCAATGCTGGTGTGCCTGGGAAATTCTTACATGCTGTAATG AGTTCAGATGGTGCTGGTAATTTCTAATTACTTAGATATTGGAATAAGCAACTGAAAAACTTACCATACATTGAATATGG TGAACATGCATCCATGATGTTTGAATACTGTAAGTTTATGTTGGCTTAGACTTAGTTTAGTATATGGGCCAGACAAGTGT AATTCAACAATTCGATATTAGGAGATCCGTTAAGGGCTTTTGTCAGATTGCGAATGTTGGTTCCTTTAATACATATGGAA AGACACAAGTTTTCCAAAGGAAAGTGTTTATGATCTAAAACCATTTAATTGCAATTCAACAGCTTAAGCATTTAAGAAAA TTAGTTCTGCATAAGATAAGACTATTAAAGTGATTCAACCTAGTAGCTCAACCTTAAAAATGATTTGGTCCTTAACAGAA AGAACATAATAATTTTGTATTCCCTTTCACCAATCCTGAAAATGATAGCTTCATAACCACTTTATGTCATATTTTCCAAT TGATAGATTATACTCAAGTTATATAACTGATTCATATTTTATGCATGCTATTCACAGATGTGGGAACTGTGGCTTCAGTC ATCATGTATTCCTTCTATCTAAATGTAACTTTAAAAAGCCAACAACTCTGCACAGTACCAGTAATCAATATTAACCGGAC AAATCTTGGCTCTCATGCTGAACTCAAGTGGTTGCTTGATTCATGCCGTATTGATCAGTCATCCTTAATCTTTGCAGATG AGGTTAGTTTTACAACAACACTGTTCTAAGGGTAGATAGTTATAATTTTTGTGAATAGGCCTGCCAATTACTCAACATAT GTTCTTCTTAGTTTCTTGATGTGTATAGAACTTGATGCAGTATATGAAAAATTACAGCAATTTATTACAGTTATAGACAT TCTGATAATCTTTTGAAACATTAGCAAGAAGCTAAAAAAAATTACATTGAGCAAATTAGACCATGTATGCGCCTCCATCA CAAAAACCTTACCCTTACATTGACATCTAAGCATCCTTTGGTGTATATGAATGCTTACTTTAACATGATTTTCATTTCTT AAATTAATTCCAAACAGATTGATCTTTCATATTATGAACTATTTGGAAGTCTTAAGATAGTGCTGTTGAAGAGCAGCAGG ATGGCAAGTAAGCAAGAGGTAACAAATTATGCATTGGACTTACACACTGCTCTGCTTTTTGTTAGAAATGATGGATATTT AATTTGTTTTTTTGACAACAGAAATTGAAGCAGGCTGTTGTTGAAGTTTTTCACTGCAGAAAGGTTAAATTTGATTCTAC TTTATCCATGAATTTTTTATTCTAGGTATTTAAGAACTAATTGTTACCATCCATGTCCTATTTCTTGTTGTGCAGGGTGA GACAACATATCCATGGGTTAAAACTGTCACTACAGGAGAGGTAAGTCCTTAAATTCCCAATAATAATGTTCTCTGTGACT TAATCACTCAATTTCACAAGTTCTTCACTACAGGAAGGTTCTTGCTGTACTGCTATAGCTGACAAATTTGCTACCTACTC ACCTGAAATTTTGGCTAGCAAATCATTCAGCAAACTTCTGGTACTTGAAAACTTCTTGCTCTAAATTTTGAATGTCTCGT TTTTAATATGTATGTGAAATTCTTTCAAGAAGTATTTATTTATAAACTACGGTTTTTTCCATCGCATGACTTGGAGGAAC TACATTATGAACAAAGTTTGAGACTGATTGTGTTTGGTATCTTAAAATGGTTGCAGTTAGCTGGCATACTTTTGGATACT GGGAATCTAAGGGACCCTCATTGCACCTCCACAGATAAATACATGTCTTCATTATTGATCAATGGTGCTGGTCGTTATGG ATGCAATGGTCTTTACAAATTATGTATGTCCAACACCACTTGTTACCAATCAAGTTTTATATATAGCACATGCAAATGTC GACCACGAATTAACTTTTGCATTTTTTTTGGTTAAAAAAACAACATATTTGAACTTGACTAGATCGATCTTTGCAATAAT TTTTGTAACTGATATACTTATAGTTGTAAACTTGATTTAGTCATTTAACTCTTTGTTATGTGATTTTCAGTGAGATACAA GATGCATGACCTTTCTTCTCTGCAAATAGCGGATATCTTGCGGAAAGATTTTAAGAAATGGAAAGGACAAGGTATTTATT ATATATTTTATTGTATCATGACTCAGGAGATGAGAAAATAAAATACAGAGATTTTGATAATACAGTACATTTTGTTTTGC TGAATAAAAGCAGAAAGTGCAGATTCAAGATTAATGTGGCAAGTTGGCATGAGCTGTATTGGGGTTTCAATCAGACAGCT TGTCACTCAGACGGAAAATCTAGCACAAGAATTAACATACTTCCAGAGTGAGTACTGTTTCTGTTTTGGAGTAAATCCAT CTCAATCCTCAAGTTACATCATATCATTTTGGTTTTTGTTATATAATTGCAGAGTCGGAGAAGCTTCGGGCACTTATAAT CGTTTCAGGTTACTACAATGAGGATAAGAACTTCAAGGTTTGTCCCTACTTTACTTTCTATGTTAATAATCGAACTCAAA ACATCTGGAAGATTAAATTAACTAAACACATGCATCCACTGACTTTGTGTATGTATAGAGAGAAGTTTTAGTGTCAACAG AATCAGTGAAGCTGTTGGAGAGTTTACTCTTTTTCTTGGATTTCAATGCCTCCCGCCTGCCCCTCAAAACTTTACACTTA CCAGGTTAGTTTAATTTCATGTTATTAGTTGAGTAATGATTAATACTACCTTAGATTGAAGTGCATTAATGCAATGCTTG GTCATGTTGTTGCAGGTCTGAAAAATGAGATGAAAGCGTATGAGATTGATAAGATTACCTCAAGAAAAACAGTAGAGCAT CTGATTGAAGAGTTTGTCGGGATACCGAAAGCTTAATTAATAGGAGAAGAACAAATTATTTCAATTTATCATAAAGAAGG AAGGGGGCATCCCATCCAAGGATTAATTCTAAGAATAACTATATGAGTGGAGTGCTGGAGCAGCCAGCCTTCATGAGTCA TGACGGTCTTTGATGGAATAAGCTTTTGAATTCTAACTCTGTTAGAATATTTGGTGATTGCCATAATTGTGGTTAACCTG TTCCTATGTTCAGCATTGACGCATTGTCTAAATCACTTAACCATTTTCTAAAATCAAATACCAGCTACATTCTCTTCTTT TGTTCAGCCAGCATTAATAAATATCAGAAGTGAAGGAAAATCCAGCCACAGTAAAAGAGCTTACTGCCACATGAGTAAAA GATAGTAGAAAATTAAATGCATAGGTTCTAATCATATGTAGTACACTGAATTTAAGCATATGTTGCCAAAAAATTGTATT TTGAAAT
CDS sequence (LotjaGi3g1v0555500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTTTCGGAGTCTCCAACAATTCCCATGTTGTCTTCTTTTTCTTGTTGTGTACCTTATTTGCCGTCTCCTAAGCTC TTTATTTTTCAATGTTCCCACTCTTAAATTGTTAACTCCACCCACCATGAAGCCTGCTGCTGGAGCATTTGCCCCAACTC ATCAGGAACCGTATATTCGTACCAGAGAGAATCTATACTTTGATGGCCTTCTAAGACCCTTGAAACCTCAAGCTGGAGCT AATAGCAGCAACATTCTCATATCCGTATCAGAAAGTGGTGAAAAGGAATTTGTGTCAAATATGTCTGCAGAGGTTTTCGA TCACAATGACTTATCTGAACATTCTTCATCTGAGAGGTGGTTGGAGACTAGTACAATTGCTCCATTTATACAACTAGATA TCCAATCTGGTCTGAATGAAGTAGCTAATCTTAGAAGTGGCCAATGCCATAGCCCAAAGACCCCTCAAGTTGATGAAGAG CATCAGGCTTTGCAATCACCTGCAATACTCAATACCGAAAAGACATACACTGTTACCCGAAGAAAAGAAAAGCTATCAAG TATTTCACTTCCACTATCTGCAGCTTCATACTATAATGGAGTATCACCAGAAATGGAAATCGTTGAATCTTGTGAAAGCA TTGACAAGCTAAATGCATATTTGAAAGCAAGAAAGGATGATGTCAATGCTGGTGTGCCTGGGAAATTCTTACATGCTGTA ATGAGTTCAGATGGTGCTGATGTGGGAACTGTGGCTTCAGTCATCATGTATTCCTTCTATCTAAATGTAACTTTAAAAAG CCAACAACTCTGCACAGTACCAGTAATCAATATTAACCGGACAAATCTTGGCTCTCATGCTGAACTCAAGTGGTTGCTTG ATTCATGCCGTATTGATCAGTCATCCTTAATCTTTGCAGATGAGATTGATCTTTCATATTATGAACTATTTGGAAGTCTT AAGATAGTGCTGTTGAAGAGCAGCAGGATGGCAAGTAAGCAAGAGAAATTGAAGCAGGCTGTTGTTGAAGTTTTTCACTG CAGAAAGGGTGAGACAACATATCCATGGGTTAAAACTGTCACTACAGGAGAGGAAGGTTCTTGCTGTACTGCTATAGCTG ACAAATTTGCTACCTACTCACCTGAAATTTTGGCTAGCAAATCATTCAGCAAACTTCTGTTAGCTGGCATACTTTTGGAT ACTGGGAATCTAAGGGACCCTCATTGCACCTCCACAGATAAATACATGTCTTCATTATTGATCAATGGTGCTGGTCGTTA TGGATGCAATGGTCTTTACAAATTATTGAGATACAAGATGCATGACCTTTCTTCTCTGCAAATAGCGGATATCTTGCGGA AAGATTTTAAGAAATGGAAAGGACAAGAAAGTGCAGATTCAAGATTAATGTGGCAAGTTGGCATGAGCTGTATTGGGGTT TCAATCAGACAGCTTGTCACTCAGACGGAAAATCTAGCACAAGAATTAACATACTTCCAGAAGTCGGAGAAGCTTCGGGC ACTTATAATCGTTTCAGGTTACTACAATGAGGATAAGAACTTCAAGAGAGAAGTTTTAGTGTCAACAGAATCAGTGAAGC TGTTGGAGAGTTTACTCTTTTTCTTGGATTTCAATGCCTCCCGCCTGCCCCTCAAAACTTTACACTTACCAGGTCTGAAA AATGAGATGAAAGCGTATGAGATTGATAAGATTACCTCAAGAAAAACAGTAGAGCATCTGATTGAAGAGTTTGTCGGGAT ACCGAAAGCTTAA
Protein sequence (LotjaGi3g1v0555500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCFRSLQQFPCCLLFLVVYLICRLLSSLFFNVPTLKLLTPPTMKPAAGAFAPTHQEPYIRTRENLYFDGLLRPLKPQAGA NSSNILISVSESGEKEFVSNMSAEVFDHNDLSEHSSSERWLETSTIAPFIQLDIQSGLNEVANLRSGQCHSPKTPQVDEE HQALQSPAILNTEKTYTVTRRKEKLSSISLPLSAASYYNGVSPEMEIVESCESIDKLNAYLKARKDDVNAGVPGKFLHAV MSSDGADVGTVASVIMYSFYLNVTLKSQQLCTVPVININRTNLGSHAELKWLLDSCRIDQSSLIFADEIDLSYYELFGSL KIVLLKSSRMASKQEKLKQAVVEVFHCRKGETTYPWVKTVTTGEEGSCCTAIADKFATYSPEILASKSFSKLLLAGILLD TGNLRDPHCTSTDKYMSSLLINGAGRYGCNGLYKLLRYKMHDLSSLQIADILRKDFKKWKGQESADSRLMWQVGMSCIGV SIRQLVTQTENLAQELTYFQKSEKLRALIIVSGYYNEDKNFKREVLVSTESVKLLESLLFFLDFNASRLPLKTLHLPGLK NEMKAYEIDKITSRKTVEHLIEEFVGIPKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 590 | 563 | - | – | |
| PANTHER | 203 | 586 | 384 | 3.9E-105 | – | |
| PANTHER | 203 | 586 | 384 | 3.9E-105 | – | |
| Gene3D | 212 | 438 | 227 | 6.6E-36 | – | |
| SUPERFAMILY | 240 | 512 | 273 | 1.17E-14 | ||
| Pfam | 440 | 577 | 138 | 2.1E-12 | ||
| Gene3D | 442 | 587 | 146 | 8.5E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Pyrophosphatase activity | Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments. |
Expression pattern of LotjaGi3g1v0555500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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