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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0002900 |
| Transcript ID | LotjaGi4g1v0002900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT2G02450.1 NAC domain containing protein 35; Swiss-Prot: sp|Q9ZVP8|NAC35_ARATH NAC domain-containing protein 35; TrEMBL-Plants: tr|A0A0S3RA50|A0A0S3RA50_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:606320..609210) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGAGTACATAAAGAGGATGTGAGAGAGAAGGCAAGGCAAAGCAAAGAGTAGTTAATTTTCAGTTGCAGAGAAGAGAA GAGAAGAGAGTCAAAGCAGCAGGGAAGCATGAGCCATGAAGATGGAACCACCACAACAACCACATCCTCGGCAAACGAGA ACTCTAACAAGCAATTATTAGATGATCACGAGAACGACACGGTGATGCCGGGGTTTCGATTCCACCCAACTGAAGAGGAG CTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATCACTTTCCTTGATCTTTATCG CTATGACCCTTGGGAGCTTCCTGGTATATATACTATACTATTACACACGCATGTACATACATACAAATAACAATTATTAT TTATTCAAATTTGAAAGCAAGCTTCCCTTTTCTTGAAGCAATTTCTGTAAGAAAATTCATCATTTTTCATTTTCCACGCC GCCTCCTCTTCTTCCCTCTTTTTTCTGCCATCTATCTCCCTTCAATTTTATATTTAACTTTTCTTGATACAACTAGCTAA GCTAGGTTTATTTAATATATAGTTCATTGCACGCATGGGGGTGTGCAATCTTCTTTATCCCATGCTTATTAGTTAATATT TTGCTTGTTTCAAATTTTAGTGTTGTTTAATGTTTATTGTTGGATCTGTTATTGAATCTTTAATGAGCTGAGTTGAATCA ATATCTATGATGAGGTGCAGCTTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGGAAGTATC GCAACGGCGATCGTCCCAACCGTGTGACTACTTCTGGGTATTGGAAGGCAACCGGAGCTGACAGGATGATTCGAACTGAA AACTTCAGGTCAATTGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATCCGAACCAGTTGGAT TATGAATGAGTATCGCTTGCCTCAGCATGAAACTGAACGATATCAAAAGGTACCGTACACACACAAATCTACTCTTACCA TGAAGACGTACACTCAGAATCAATTATTAAACTCGGAATCTATTTACAGAAGATTTTCCACCAATTCTAAAACTCTAAGA GGATTTTAAAAACCTGCAATGTTACACGGGTATTTGATAAAAGCTTTAAAAACCAGTTCTAGTACATAGCCTTTTTTGCT CATTCTTCTTTCATGAAGCTAGCCCAGTCAAAGGTTTAAAATTCAACCCTAGTTTTAAAGCTATGATCATTAATTCTGTG TCATGTTGGTTTTCCCAGCTCTTTTGATAATTCGATCATTAGCAATTGCCATACATCATAAATCATCTTAATTTCTCTCA CACACTTTAAGTAGCAAAATTTAGATCCAAAGCTAGCTATAGCATGCCAAACCAGTAGGTGCGTGAAACTCGCAGCCACC CATTAAATTTATATTCAAGAGTACTCTTTGCATTTAATAAATACTGATAGAAAAGATTTTGCAGGAAATGTTCACGCTTG TAGCACCGTTTGAAATTAACTCTCACTCGAACATATTTATGATTACACGCATGAATTGTGAATTCTGACACTCATGTCTC GTGACTTTGATCAATGATGAATAGTACTAGACATTTCTCAATTTCATCTCTAGTTACATATATTCATTGATTGATTGAAA TTTGAATTTGAATTTGGATCAATTGAAGGCTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATC CTTCCCTCCCTCGTTGTCTCCCAATTACCAAGCAGCCATCATCCTCAAGATCATCAAAACCAAGTGAAATAGCTCAGCAT CAACATCTGCCACACAACATGGGCTTATTTCTTGGCCAATCAAATTCAAAACCAGTTCATGATGGACAAATAGTTGAGAA TCATGAAACGGAGGGAATTAGCAGCACTGGTTCGGGTTCGGGTTCAGAACATCATGTAACAACAGCTCTTGGGCTCTCCA AGTACAATGCTTACCGTGCTGCGGTGGGTTCACTCAGCAACACAAATACAATAGGACTGCCAGCGGAGGAGGAAGGGTTG ATGCTCCTGCCGCAGCACCACCAATCTAATAATCCAAAGCAACCACCAAATAACTCTTTAGTCCATGCATGTTTCCCTGC AAATGCTGTGCCTTCAAATAATAACAATAATAATGTAGTGATGATGGATGATCTGAACAGGCTAGTAAGTTATCAACCAC AGTTCTTCAATGTTCAAAGTCATCCCAATCATCAATTATCTGCTTTACTGATGCAAACGGCGCCACCAATGTCTCTCAAC TCACTACCAAATACACTTCCAACTACCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGTAAACCAAGACCA CCCAAACATCATGCCCTTCAAGTAATTAAACTAGCTAGTACTGCCACTCTTAATTTTATCTTAATTTATCTATGAGTACT ATTGCACATACATATATATAGAGAGAGGGGGACATTAATTTACTTGTGCTTGCTAATTTCCAAGTATCAACTTTATGTGT AGCTAGCTTGTTTTAATTTCCTTACTCTAGCTAGTTAATCAATAATCTAGTATCTTATCAATAACATAATTGTATGAGTA CTCATATTGATTTATCATCAGTGTGTATATTTTGGTAGCTACCAATATATTAAGCTTTTTTATAGTTTTAGTCCCCTCCA CAGTACCCCAATTCTTCTATTTTATACATTTTAATGTCCATATATATAAGAAACGAACTAGCTTAAAGAGTCCAAAAAAG CTTTTCAAACTCACCAATTTATATTTAATTTCTTCCAATTATTGGCGTGTTCCAACTTCCAACTAGCTGATGATGGATAT ATATATATAGG
CDS sequence (LotjaGi4g1v0002900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCATGAAGATGGAACCACCACAACAACCACATCCTCGGCAAACGAGAACTCTAACAAGCAATTATTAGATGATCA CGAGAACGACACGGTGATGCCGGGGTTTCGATTCCACCCAACTGAAGAGGAGCTGGTGGAGTTCTACCTTCGCCGTAAGG TGGAGGGCAAGCGTTTCAATGTTGAGCTCATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTG GCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGGAAGTATCGCAACGGCGATCGTCCCAACCGTGT GACTACTTCTGGGTATTGGAAGGCAACCGGAGCTGACAGGATGATTCGAACTGAAAACTTCAGGTCAATTGGGCTGAAGA AAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCTCAG CATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATCCTTC CCTCCCTCGTTGTCTCCCAATTACCAAGCAGCCATCATCCTCAAGATCATCAAAACCAAGTGAAATAGCTCAGCATCAAC ATCTGCCACACAACATGGGCTTATTTCTTGGCCAATCAAATTCAAAACCAGTTCATGATGGACAAATAGTTGAGAATCAT GAAACGGAGGGAATTAGCAGCACTGGTTCGGGTTCGGGTTCAGAACATCATGTAACAACAGCTCTTGGGCTCTCCAAGTA CAATGCTTACCGTGCTGCGGTGGGTTCACTCAGCAACACAAATACAATAGGACTGCCAGCGGAGGAGGAAGGGTTGATGC TCCTGCCGCAGCACCACCAATCTAATAATCCAAAGCAACCACCAAATAACTCTTTAGTCCATGCATGTTTCCCTGCAAAT GCTGTGCCTTCAAATAATAACAATAATAATGTAGTGATGATGGATGATCTGAACAGGCTAGTAAGTTATCAACCACAGTT CTTCAATGTTCAAAGTCATCCCAATCATCAATTATCTGCTTTACTGATGCAAACGGCGCCACCAATGTCTCTCAACTCAC TACCAAATACACTTCCAACTACCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGTAAACCAAGACCACCCA AACATCATGCCCTTCAAGTAA
Protein sequence (LotjaGi4g1v0002900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHEDGTTTTTTSSANENSNKQLLDDHENDTVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAL AAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQ HETERYQKAEISLCRVYKRAGVEDHPSLPRCLPITKQPSSSRSSKPSEIAQHQHLPHNMGLFLGQSNSKPVHDGQIVENH ETEGISSTGSGSGSEHHVTTALGLSKYNAYRAAVGSLSNTNTIGLPAEEEGLMLLPQHHQSNNPKQPPNNSLVHACFPAN AVPSNNNNNNVVMMDDLNRLVSYQPQFFNVQSHPNHQLSALLMQTAPPMSLNSLPNTLPTTFSDRLWDWNPIPEVNQDHP NIMPFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 395 | 384 | 1.4E-146 | – | |
| PANTHER | 12 | 395 | 384 | 1.4E-146 | – | |
| ProSiteProfiles | 32 | 179 | 148 | 55.804 | ||
| SUPERFAMILY | 32 | 178 | 147 | 3.14E-55 | ||
| Pfam | 34 | 158 | 125 | 6.2E-34 | ||
| Gene3D | 41 | 183 | 143 | 1.2E-54 | ||
| MobiDBLite | 187 | 210 | 24 | - | – | |
| MobiDBLite | 193 | 210 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0002900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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