Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0003100 |
Transcript ID | LotjaGi4g1v0003100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Class III homeobox-leucine zipper protein; TAIR: AT5G49800.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|Q9JMD3|PCTL_MOUSE PCTP-like protein; TrEMBL-Plants: tr|A0A0R0JEP5|A0A0R0JEP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0003100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:634004..636409) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGAGGCTCATAAATTCCAGTTAAATTATGCACTGTAATTGAAATTCCCAGCTTTGCTCTAACCTTAATTTTTGGTGT ATTTTTTCCCTTTGTTTTGCTATATATTATTATTTGTGTTATTTTTGTCCTCTAATATTTTCTTTCCCTCCCCAAAGCCA CCAACACTCCATGTGCATCAAGTTTTCTACCCTTGTAGTTGCTGCTTTTTTGGAAGGAAAGAATCTATCTTTAATCTATA GAGAAAGAGTTATTGTTCTAAACTTCTAATCATGAACGGTTCTTCTGGCACTGCATGTGCATCAATCACCTCTACCCACT CACACAAGTTTTATTTGTATTATGCATTTCTCAACCTCTCTTTAAACCACTCATCACACAACACTCACTCTTTTTAAATA TATACATCAATACATGCCTTTCAGTTTACAAAGAAATTTAATGTCATAAACAAACACTTTCTGTAGGCAATTGATAACAA CAAGCCACAATGAGCAGCAGAACCGCACCTTGCAGCCGATCATGGTGAGTACCAAAACTAGTGTTCATGAATTTTCCTTT TTCTTGAACTAAACTCTCACATCTGATGAATATTATTGTGCTTGATTTTTGAAGGTCTATTAGTGAGGACTCTCTTAAAA GGTATGTGCAGTTTGCAAGTGAAAGCTGCATACAAGAATTATTGGCAGCTTCAGACACAAACAGAGGAAGTGGCAATGAT GGATGGAAAGTGCTTACTCTTGACAATGGAGTTGAGATATCAAAACGCAGGTCAGGCTCACTTCACACATTTCGCAGCCG TTGGGTTCTTAGATCTGTCTCTCCACAACAATTCATCACTGTGGCCAATGCCATTGATGCTGCAAAGGTAAATTAATATC ATCTTTCTCGTGTAATGACACAAATAAGTATACTGATATCTTCTCATGAATCTGATGAGTAAACAGAAAAGTTAAATAAA TAAAAAAAGGATTAGATTCCCATTCAGCATCTTGAAAAGAAGAGTTTTGTCTCTAGCTCTGTCCACTCCTTAATCCTATC TTTTTATTCTTAGTTCGTGGCTGACATTCATAAGAATCACAACAAATTGTACACTACCTTGTCTTTTACTTTCTTTTTTG TTATTCCTCTCTTTAAGCATTACAGACACCTTATTAGGTAGTTCATAATTATAACATGTTTGGTTCCACCGTGAAACTAC GTTGGAGAATCATTCTAGCATGTTTGGATGTTTGTGCAAATCGTAAAACCAAACACATTCTAATATTGAGTTTTGATTTA TTTTGTTAAGCCAGCAATGGGACTCTGATTTGGTGGAAGCGAGGTACATAAAAGATATTGAAGACAACCTCAGCATAATT CGCCTTAGGTTTGGAGATAACTCCAAGCCTCTGTTCAGGAATAGAGAATTCATTGTCTATGAGAGGCGTGAAACCATGGA AGATGGCACCTTGGTAAGTTAGTACTAAAATTACAACTTATAGCATATAGCATGTCTTAGATTAACTGCTTTAATTCCTC AAAACTTGCATAATCTTGCTAACTGGTATTGTAGGTAGTAGCAGTTGCTTCACTACCAAAGGAAATAGCAGCTGGGTTAC ATCCAAAGCAAAACAATGCAATCAGGGGACTATTGCTACAATCAGGATGGGTAGTAGACAAGCTTGAAGATGATTCATGT GTGGTCACTTATGTTGTTCAGGTAATTAATTAGTACTCATAGAATTAAGCGAAATGGTTTATGCATTAATGTCTCATTTC TCAATATTGCTTTTCCTCATTGTTCTTTGTTTTCAGTTAGATCCTGCAGGGTGGCTGCCCAAGTGCTTTGTCAATCGATT GAACACAAAACTGGTTATGATCATTGAAAATCTCAGAAAATTAGCCCAAACTGCATGTCCAGTTGAAGGTGAAAATTGAT TACTTTGTAAAGTTGGAGGGAGAGGAACAAATTAAGTATACTATTAATGTCCATCAATGATATTTATTTACCACTATAGA TAATAAATAGAATCAACTGAGCTAATTTTTCAGCACTGCAATACAGATATTTTTAAGTTTGTAGTTATTGTACATGTCAC CACTCTGCAAGCTAGAAAGCCTTTGGCCTTTATTCAAAAGTTGAAAAAGTTAGCCAATTAAATAATCACCCTATTTAAGT TGGAAAAGTTACACAAGACACATGATAGTCATCCACTTATTAACTATGTTGTTTTTATCTGTTGAACGTCTTTTCTAGAT TTTATGAGCTAATAACACCTGTAATGATATTGGCCTTTGATGTTAATGTGGTTTTTGAAAAGATAATAAAGCTAAATCAT TGTTAATTGTATTCTTAGACCCAAAGTTGTATACATATAGTTATCATTTCCCGCGATTTCTTCCACGGCTGCACTTAATA CATATA
CDS sequence (LotjaGi4g1v0003100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGCAGAACCGCACCTTGCAGCCGATCATGGTCTATTAGTGAGGACTCTCTTAAAAGGTATGTGCAGTTTGCAAG TGAAAGCTGCATACAAGAATTATTGGCAGCTTCAGACACAAACAGAGGAAGTGGCAATGATGGATGGAAAGTGCTTACTC TTGACAATGGAGTTGAGATATCAAAACGCAGGTCAGGCTCACTTCACACATTTCGCAGCCGTTGGGTTCTTAGATCTGTC TCTCCACAACAATTCATCACTGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATTTGGTGGAAGCGAGGTA CATAAAAGATATTGAAGACAACCTCAGCATAATTCGCCTTAGGTTTGGAGATAACTCCAAGCCTCTGTTCAGGAATAGAG AATTCATTGTCTATGAGAGGCGTGAAACCATGGAAGATGGCACCTTGGTAGTAGCAGTTGCTTCACTACCAAAGGAAATA GCAGCTGGGTTACATCCAAAGCAAAACAATGCAATCAGGGGACTATTGCTACAATCAGGATGGGTAGTAGACAAGCTTGA AGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTAGATCCTGCAGGGTGGCTGCCCAAGTGCTTTGTCAATCGATTGA ACACAAAACTGGTTATGATCATTGAAAATCTCAGAAAATTAGCCCAAACTGCATGTCCAGTTGAAGGTGAAAATTGA
Protein sequence (LotjaGi4g1v0003100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRTAPCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRGSGNDGWKVLTLDNGVEISKRRSGSLHTFRSRWVLRSV SPQQFITVANAIDAAKQWDSDLVEARYIKDIEDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEI AAGLHPKQNNAIRGLLLQSGWVVDKLEDDSCVVTYVVQLDPAGWLPKCFVNRLNTKLVMIIENLRKLAQTACPVEGEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 229 | 228 | 7.4E-54 | – | |
PANTHER | 2 | 229 | 228 | 7.4E-54 | – | |
CDD | 28 | 228 | 201 | 3.34015E-41 | – | |
SUPERFAMILY | 29 | 229 | 201 | 8.25E-34 | – | |
Pfam | 37 | 216 | 180 | 1.8E-13 | ||
ProSiteProfiles | 46 | 211 | 166 | 25.535 | ||
Gene3D | 48 | 234 | 187 | 4.4E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi4g1v0003100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…