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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0003600 |
| Transcript ID | LotjaGi4g1v0003600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|I1MQV6|I1MQV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0003600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:673997..677659) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAAGATCTGAAGTGTTGACGCGCAGTGCCAGTTAGGGAGAGGGGAGAAGAAGGATATAAAAGTGAGGGAAGGTGGTT TAATCACAGACGCAGATCAGGTTCCCCACCGCATCAAGGAGCTGCTCTGCCCTTCTCCTCTCCGATCCATATCTAGGTAC CAATTTTCAATTTTATGCATGTACGCCGCAGATTTATTTTCCCTCAATTATTTATTGATTTATCACTTTCGTGTGTTTTC GATGTCTGGTTTTGGCTCTGAATTCATCGGTTTTTTAATCTTACAAGTTCAATTTTGTTCCTGCTAGTGGCTTCCTGGTG TAAATGTAATTGAAATTGCCCCAATTGATGCATTCAACTTGTTTATCTTCATGTTTTATAGTTTTTGCTAACTCAGTGTC GGTTAATTATAAAAAGTGTCTTGTTCTAGGGTTTGATTGCTGCTATTACTTTTCCATGATATGATAGCCTGATCATTTTT CCAGAGGGATTTGATCTTCTTTACATACAAGTTAAATTGAACTATCTGCAGTTTCAACTTTTTATTACTCCCTTTATGGA CCAGGTATCATTAGGCCAGGGAAGAAACATGTCTCAACACCAGGGGGACGATATGGAGTATGCTGCAGACGATAATGAAA TGGCCGAAGAAGTAGAAGATGACGCGTATTTCCGTGGCCAAGTTTTTGTTGATTCAGAATCGGATGATGATGATGATGAA TATGAGTCTTTGGTTTGTTTCAAACTCAACTCCCTTTGTTATCATTTCATGTTTCACTTGTTGTCTGGTGTTTGTTCTTC CCCTTTGCAATTTTATTTATTTATTTGCTATTTGTTCATTTATTTTCACACTTTTATAGCACATGCCTCCTGGTCTGTCT CCCATACCAATAGGATGTTGTCTTAGGTTTGCAATTACATAACTGATAGTTGCTTGCATGTACTGCCATTAACACAATCT TTGTTGCAGGAAAACCGGATAACAGATACTACTGCGGCAGAAGCTAGAAAGGGGAAGGATATCCAAGGTATACCTTGGGA TAGACTGAGCATCAGTCGCGAGAAGTATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCGCAATCAG GGGAACAGTCAGAGAAGGTAAAATATGTTTGACTTTGAGTCTTTGTTGCATTTGGATAATGACTTTAAGGGGATGATTTG ACCTTCCACTTTATTCATTGTCTACAGGAATGCAAACCAACAGATAAAGGAGGAGTGTATTATGATTTCTGGCAAAATAC AAGATCTGTGAAATCAACAATACTTCATTTTCAAGTACGTAAATATTTTTATTAATTACTTCTAGTGATTTCAGAGAGAT AGTATTTATCTCATCTCAGGCTGTGTTCTATTGTCTCTGAAATCGTATTTTCCTGCTCATACATCTTATAGAAATAAGTT GACTTACTATGTCCTTCTGGAAATTCAAAATATGTGATTATCAATAACTAACAATGATGTGAGCCTCTAATCTGTCATAT GCAGTTGAGGAACTTGGTTTGGTCAACGTCAAAGCATGATGCATATCTTGTTTCAAATTACTCAATTATCCACTGGTCTT CTTTAAGTTCCAAGAGATCAGAAATCTTGAATGTTTCAGGGCATGTAGCTCCATGCGAGGTAATATTTTTGTTACTGCTT TGTTGTCATAAGGAACACTTAGACAGAGCATCTAAGCTTTTGAATACCTGTTGCTAATAGAAACATCCTGGAAGCCTTTT GGAAGGATTCACTCAGACACAGATTAGTACATTGGCTGTGCGGGATAGATTGTTGATTGCTGGGGGTTTTCAAGGAGAAC TTATTTGCAAGGTACTTCAGTTGTCCTTATAACTTCTCTTCTCTGTTATAGCTAGTATTTTTTACTTATCATCATTATTT AAGAGGTCTACTAATGCTGTGGATTCATCATGGTACATTCACTGTGATTTATCGCGCTCAATATTTTTTTTTGCTTCTGC TGCTCAAATTAGTTTGTGAATTTTATAATCATACTATCATAGTATATTTTAGATATTTACCCTGTTTTAGAGATGCTTCA GAGATTATTTTGCCTTCTTATATTGAATGGAAAGTTGCTGATTAGCCAAATTGAAAGAATCTGAAGTCATTCTTAATTAT GTTTATTTGGCAACATTGTCCTGTTTTGCCTGATTAATTATTCATACATCTCATTTTGCAGTACATAGATCGACCTGGGG TTAGCTTTTGTTCTAGAACTACATTTGATGACAATGCAATCACAAATGCTGTCGAGATCTATGACCATCCAAGGTCTCTC TTCTTTGCTTTTAATCTTATCAATTTCATTTTCTCTATTTATTTAGGGGCTCTAATGGTTGATCGATGTTAAAAAAATTT ACTGTTTACAACCCTCAATTCTATATTTTATGGCATACTAACAATCAATTACTGTAACAGTGGAGCTGTTCATTTCATGG CTTCAAATAATGACTGTGTAGTTAGAGACTTTGACTTGGAGAGATTTCAGCTTTCCAAACATTTCTTCTTTTCCTGGCCA GTAAATGTATGTAATTTTATTTTTATTTGGTATCAATTTTTAATTAGGTAAAAATTCTTGTGTTAATTTGGGCCGTTAAT TTGTTTTTCATTATTGAAAATTCTTGTGTTAATTAGGCATTTAATTCTTTGAATGCCTATTACTTTTCCCTGCGACTAGC GTGATAAAATATAATATCAATATCTTGTAGAAAGTAAAAGAAATGATTGTTTGTGTTCTTTCTTTTCTATCTGCAGCACA CTTCATTGAGCCCTGATGGTAAATTACTTGTAATTGTTGGAGACAACCCTGAAGGGATGCTAGTGGATTCTCAAACTGGA AAGGTTGGTGTAATTCCTTTTTTTCTGTGACAGTTCCTTATGTGCTGTATGCTGAAAAACTATGAATATCTAACTTCAAT TTTGGTTCATTGTAGACTGTCATGCCTTTATGTGGACATTTGGATTACTCATTTGCATCTGCATGGCATCCTGATGGCCG CATATTTGCCACCGGGAACCAAGACAAAACATGCCGTGTTTGGGATGTTAGGAACTTGTCAAAGTCTGTTGCTGTGCTTA AGGGCAATCTTGGAGCTATTCGATCTATACGATTCTCATCTGATGGGCAGTTCATGGCAACAGCTGAGCCGGCTGACTTT GTGCATGTCTATGATGCAAAGAATGGGTTTCAGAAGGAGCAGGAGATAGATTTTTTTGGGGAGATCTCTGGTGTATCTTT TAGCCCTGACACAGAATCACTTTTCATAGGCGTGTGGGATCGCACCTATGGAAGCCTTCTTCAGTACAATAGGCGAAGAA GCTGCATGTATCTTGACTCGTTGTAAATTTGTAACTGCACACACCTTGTATTTTTAAGCAACTGCAGTTTATGTTCTTCT GTCTTAGGAATTTGAGAACTGTGGCAGTGTCCAAAGGAAGCAAAACTGGTTTGCCTCATCACACAATGTAGGAGCTGTTT GTACTTTGTACCCTGTTGTGTTGAAATAACATTGACTGCAATCTCTTGAACATTTTTTTTTGTTGGTTAAAAAGCTTGTG CTAAAGATTGTATTCGAAGTTTGTACAGCGGCTATGGCTCATATATGCATTGTTGCCGTTCTG
CDS sequence (LotjaGi4g1v0003600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAGGTATCATTAGGCCAGGGAAGAAACATGTCTCAACACCAGGGGGACGATATGGAGTATGCTGCAGACGATAA TGAAATGGCCGAAGAAGTAGAAGATGACGCGTATTTCCGTGGCCAAGTTTTTGTTGATTCAGAATCGGATGATGATGATG ATGAATATGAGTCTTTGGAAAACCGGATAACAGATACTACTGCGGCAGAAGCTAGAAAGGGGAAGGATATCCAAGGTATA CCTTGGGATAGACTGAGCATCAGTCGCGAGAAGTATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACC GCAATCAGGGGAACAGTCAGAGAAGGAATGCAAACCAACAGATAAAGGAGGAGTGTATTATGATTTCTGGCAAAATACAA GATCTGTGAAATCAACAATACTTCATTTTCAATTGAGGAACTTGGTTTGGTCAACGTCAAAGCATGATGCATATCTTGTT TCAAATTACTCAATTATCCACTGGTCTTCTTTAAGTTCCAAGAGATCAGAAATCTTGAATGTTTCAGGGCATGTAGCTCC ATGCGAGAAACATCCTGGAAGCCTTTTGGAAGGATTCACTCAGACACAGATTAGTACATTGGCTGTGCGGGATAGATTGT TGATTGCTGGGGGTTTTCAAGGAGAACTTATTTGCAAGTACATAGATCGACCTGGGGTTAGCTTTTGTTCTAGAACTACA TTTGATGACAATGCAATCACAAATGCTGTCGAGATCTATGACCATCCAAGTGGAGCTGTTCATTTCATGGCTTCAAATAA TGACTGTGTAGTTAGAGACTTTGACTTGGAGAGATTTCAGCTTTCCAAACATTTCTTCTTTTCCTGGCCAGTAAATCACA CTTCATTGAGCCCTGATGGTAAATTACTTGTAATTGTTGGAGACAACCCTGAAGGGATGCTAGTGGATTCTCAAACTGGA AAGACTGTCATGCCTTTATGTGGACATTTGGATTACTCATTTGCATCTGCATGGCATCCTGATGGCCGCATATTTGCCAC CGGGAACCAAGACAAAACATGCCGTGTTTGGGATGTTAGGAACTTGTCAAAGTCTGTTGCTGTGCTTAAGGGCAATCTTG GAGCTATTCGATCTATACGATTCTCATCTGATGGGCAGTTCATGGCAACAGCTGAGCCGGCTGACTTTGTGCATGTCTAT GATGCAAAGAATGGGTTTCAGAAGGAGCAGGAGATAGATTTTTTTGGGGAGATCTCTGGTGTATCTTTTAGCCCTGACAC AGAATCACTTTTCATAGGCGTGTGGGATCGCACCTATGGAAGCCTTCTTCAGTACAATAGGCGAAGAAGCTGCATGTATC TTGACTCGTTGTAA
Protein sequence (LotjaGi4g1v0003600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQVSLGQGRNMSQHQGDDMEYAADDNEMAEEVEDDAYFRGQVFVDSESDDDDDEYESLENRITDTTAAEARKGKDIQGI PWDRLSISREKYRQTRLEQYKNYENIPQSGEQSEKECKPTDKGGVYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDAYLV SNYSIIHWSSLSSKRSEILNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDRLLIAGGFQGELICKYIDRPGVSFCSRTT FDDNAITNAVEIYDHPSGAVHFMASNNDCVVRDFDLERFQLSKHFFFSWPVNHTSLSPDGKLLVIVGDNPEGMLVDSQTG KTVMPLCGHLDYSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFSSDGQFMATAEPADFVHVY DAKNGFQKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQYNRRRSCMYLDSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 43 | 455 | 413 | 1.0E-278 | – | |
| PANTHER | 43 | 455 | 413 | 1.0E-278 | – | |
| MobiDBLite | 43 | 73 | 31 | - | – | |
| Gene3D | 235 | 453 | 219 | 3.7E-31 | ||
| SUPERFAMILY | 255 | 447 | 193 | 9.15E-34 | – | |
| SMART | 319 | 358 | 40 | 1.0E-6 | ||
| Pfam | 321 | 358 | 38 | 9.8E-5 | ||
| ProSiteProfiles | 326 | 367 | 42 | 13.148 | ||
| ProSiteProfiles | 326 | 410 | 85 | 16.296 | ||
| SMART | 362 | 401 | 40 | 0.016 | ||
| SMART | 405 | 446 | 42 | 280.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0003600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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