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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0009300 |
Transcript ID | LotjaGi4g1v0009300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Acyl-protein thioesterase 1; TAIR: AT4G22300.1 carboxylesterase; Swiss-Prot: sp|Q8GYK2|SOBRL_ARATH Probable carboxylesterase SOBER1-like; TrEMBL-Plants: tr|I3TAP9|I3TAP9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0009300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1249349..1252484) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTCAAACTTATTTGTGAGGTCCTATTTGTGAATGTGAAAGGTGAGAGAAGGTTGATAACAATGCAACCGTGCAAGA TCCATATCCAGCAAAGTCATCATGAACGAGATGAGAGATGAAGATCATAAAGCCCATTATCTTGTTTACAATCACATTAA GTAGCGCTCTTCTCATTCTCCTCCTATTCCCCAATAACCCTTCTTCTTCTTCTTCTTCAGTGTCCATGTCGATGTCTCGA AGCTTCATTCTGTGGCTCCATGGTCTGGGCGACTCGGGCCCTGCCAACGAACCCATCAAGACCTTGTTCACTTCTCCTGA GTTCAGAACCACCAAATGGTCCTTCCCTTCCGCACCGAACGCCCCAGTCACTTGCAACTGTACGTTTTTCTTCTCTATAC ACCATTTCTCAGTTACTTTCAATATTAAATTCATTGATTTGCTTCTTGCAGATGGTTCTGTAATGCCTTCATGGTTTGAT ATCCAGGAGATTCCTGTCACAGCTGTGAGTTTAGCTTCCTTTTCTCTGTGCTTTTTTCCCAATATTAATGCTGTGTGATC AATCTTGAAGGTGAAATTGTAAACAATAATATAGCGAATTAGGCTTTATTTCTGTATTGCTATCAGAATGTAAATTGGAG CTCTATGTATACTACATTTAGTTCAATTATGCACACATATATTAGGGTTACAAAATGAGAGGAGAGGGTTCAAATCTCCA CTTGATAGTAAGCATCATTCTGTTTGAAGCATCATTCTTTGTGTTTCTATCATGGTGGTGGACTCGGTTGAGTGAGCATA ATTCTGTTTAAAGCATCAAATCAACCTGTGTTTTTTTTATCAAGGTGGTGCTAAGTGTTAACCAATTAAGAACTATGAGA TCTGCAAAGTGCTCTTCTGTGATAACCTTCATGATGGTTTGTTTACTAGTGTGCCACTGTTCTGACAATAAGTTGATTTC TCATTATATTGATATTCGGCAGCCTTGATATTCCAAAATTTTCAGATATTTTGTATTGATATTCCAAAATTTTCAACAGT TGATCAGAGTTGTGCTTAAAGCATTTAACATGATCAGTTATAATGTTAATTTTGAAAAAAAATCATCGTTATTTGGTCCT GATTTAACTGACTAATTCTATGTGGTGTAATTTGCACCTGTGAGCCTCCTTATATTAATGTGATTTTCAGGCCAACACAA GGATGGTTATGACTTATGAGCATGATCAATTTTCTCTTTTTAAATATACTTGAAAGCATCATATGTTGTCATGAATTAAG CTCAAATAATGTGCCTTTTCACACCCCCCCCCTCTTTTGGTCCAATTAGCTGAGCAACTTGACTCATGCAACTGCTTTTA TCATATTTGGGGTGATATTGTTTATCTCATCGATGTATGTTAAACACTTTTTGCTTATATTTGTCAGGATTCTCCTAAAG ACGAGAGTAGTTTACTTAAAGCTGTTCGGAATGTGCATGCTACAATAGATAAGGAAATAGCTGCTGGCATAAACCCTAAC AATATATTTATCTGTGGATTCAGTCAAGGAGGTCTCTCTTTTATTACCCTTTCTCTTTATGAGTGTGTCTGTGGGCATTT CTTTTCCTTCCCACTAATCCATTAATAGAAAAACAGATAGGTACAACTTATTAATGATGACATTGTTTTGCAGGTGCCTT GACCTTGGCTAGTGTTCTATTGTACCCTAAAACCTTAGGTGGAGGTGCAGTCTTCAGTGGTTGGGTTCCATTTAATTCGT CTAACATAGAACAAATTACACCCGAGGCAAAGCGGGTACTTATCTTCAGTATCAGTAATGTTATTATCTTAAGTATTGTT ATAATGTGCCATCTTGGCGTTTTTGCTCTCATGTTTCTTTATTAGCCTAAATTTCTGTCAGCTATATTCTGTCCATTTTC TGCTATAGAAATCCACACCTTTGGCTTTATTTCAAAACAGATTCATTTCTATTTTCATCCACTGTCAAGCATGGATGCCA GCTCTACTGGTTTTCCTGGTCAAGGCCTGTGGTTGTTGATACACAGTTGTCCTTTGAACGGCTCTCCCATATCTTTAATT GTTTATGTCAATACTATTTTCAATTTAGAATCACTTTCTAGTTTCTATCAGAGGCATGAGCCACATACTAGAATCACTCA GTGTGTGTTTTGCGCCACTTTATACACAAACATAGAGGTCTGTCTCGAAGCTACATTTTGTTTGTATCAACTTCTATTTT CTCATAATCAACTCTGGCGCCCAAAAGCTACTCACAGACACTTTTCTTGACAGTTGATTTTGCCTTTAGAATCAATTGTA AAAGGTTTTTTAAAATGCACGGACCTAGGAGCTTCTGAAAAGCTACTTCCTACGTGAAAAACCTACCGTATCTACCAATA TGTACACAGTTTGTATCTGTGGATGGGGTGTTTTAATCTGTAAAACCATTTAATTTGCATAGCCGGTCATCATAACATTT GACTTAATTGAATTTGCTGGCTTGCAGTTTTGTCTATTATATTTTTATTAACCTCGTACACACAAATATCTGCAGACACC CATATTATGGTCCCATGGGTTGGCTGATAGAACAGTATTGTTCGAGGCCGGACAAGCAGGTCCCCCTTTCCTTGAAAAAA TTGGTGTTGGATGTGAATTTAAGGTGAAGTTTTAAGTTTCAACAATTCATTCATGAACCCTTCTACCAGTCATAGATATT GACATTTGTTGTATTAGCAGGCTTATCCTGGTCTTGGCCACTCGATAAGCAATGAAGAGTTGCGGTATCTTGAGTCATGG ATCAAGGCGCGCTTTCAGAGTTCTTCATAATTGTTATTTCAGCTTTGGATATCAAACTCGGTTACTCAATAATATGAATG TATATGCTTGTGCTTGTGCAAACCTCCTGGTCAGCTGATCTATCTTGCTTTATCCTAGTCAATGTTTAGCAGAAACCAAA TTTCTTGCTTGATCTCATTTATAATATGTTTTGATTGACTTCTTTCTTAGAATCAATTCTGACAATTAGAAGTTACTGAC AGACTTTGCAAGTGTTTCTTTTCCCTCTCACTCTCAATAACACTATAACTGCACTTTTTCTATCTGAGCATATGGAAATA TGAAATAATTTACAGC
CDS sequence (LotjaGi4g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATCATAAAGCCCATTATCTTGTTTACAATCACATTAAGTAGCGCTCTTCTCATTCTCCTCCTATTCCCCAATAA CCCTTCTTCTTCTTCTTCTTCAGTGTCCATGTCGATGTCTCGAAGCTTCATTCTGTGGCTCCATGGTCTGGGCGACTCGG GCCCTGCCAACGAACCCATCAAGACCTTGTTCACTTCTCCTGAGTTCAGAACCACCAAATGGTCCTTCCCTTCCGCACCG AACGCCCCAGTCACTTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGATATCCAGGAGATTCCTGTCACAGCTGATTC TCCTAAAGACGAGAGTAGTTTACTTAAAGCTGTTCGGAATGTGCATGCTACAATAGATAAGGAAATAGCTGCTGGCATAA ACCCTAACAATATATTTATCTGTGGATTCAGTCAAGGAGGTGCCTTGACCTTGGCTAGTGTTCTATTGTACCCTAAAACC TTAGGTGGAGGTGCAGTCTTCAGTGGTTGGGTTCCATTTAATTCGTCTAACATAGAACAAATTACACCCGAGGCAAAGCG GACACCCATATTATGGTCCCATGGGTTGGCTGATAGAACAGTATTGTTCGAGGCCGGACAAGCAGGTCCCCCTTTCCTTG AAAAAATTGGTGTTGGATGTGAATTTAAGGCTTATCCTGGTCTTGGCCACTCGATAAGCAATGAAGAGTTGCGGTATCTT GAGTCATGGATCAAGGCGCGCTTTCAGAGTTCTTCATAA
Protein sequence (LotjaGi4g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIIKPIILFTITLSSALLILLLFPNNPSSSSSSVSMSMSRSFILWLHGLGDSGPANEPIKTLFTSPEFRTTKWSFPSAP NAPVTCNYGSVMPSWFDIQEIPVTADSPKDESSLLKAVRNVHATIDKEIAAGINPNNIFICGFSQGGALTLASVLLYPKT LGGGAVFSGWVPFNSSNIEQITPEAKRTPILWSHGLADRTVLFEAGQAGPPFLEKIGVGCEFKAYPGLGHSISNEELRYL ESWIKARFQSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 7 | 7 | - | – | |
Phobius | 1 | 31 | 31 | - | – | |
TMHMM | 7 | 24 | 18 | - | – | |
Phobius | 8 | 23 | 16 | - | – | |
Phobius | 24 | 31 | 8 | - | – | |
PANTHER | 31 | 247 | 217 | 7.1E-108 | – | |
PANTHER | 31 | 247 | 217 | 7.1E-108 | – | |
Phobius | 32 | 252 | 221 | - | – | |
Gene3D | 36 | 251 | 216 | 2.2E-60 | ||
Pfam | 41 | 245 | 205 | 2.7E-47 | ||
SUPERFAMILY | 43 | 248 | 206 | 2.15E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0009300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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