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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011300 |
| Transcript ID | LotjaGi4g1v0011300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S21 family protein; TAIR: AT3G26360.1 Ribosomal protein S21 family protein; Swiss-Prot: sp|Q3A2B3|RS21_PELCD 30S ribosomal protein S21; TrEMBL-Plants: tr|I3T4W3|I3T4W3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0011300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1394434..1402782) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGATCCAAACTCGTTCGCCGCTAAAATTGTTTAGTGTCACGAAGTTACAAAAATACCCTTAATATACAAGTAGTAGT GTGAAACACCTCTGGCCCCCGACCCTAATCCCCTTATTGTTTCACTGCTCCTGCGATTCTGCCTGGGCTTCTTCTTTACA CTTGCCTTCTCTGTTCCCATCTCTTCTTCGTTCGTGATCTTCGCGCGCCGTTTCTGATCTCACCGGCAGCCACCGAGGTA ATTTCGCCGTTTCATTTTCGTCTGCTCTTCGCCGTTCCTGATACCATTTCGTTCCGATTGTGTTTGTATGTGCTATTGGA GCTTCTAGTAGATTTATTGTCAGTGTCAACTTTTGGTTTGCCAGTTTGTATATTTCTATAATGTGCTCTGTGCCTCTGAT TGCATGTTCATTGAACTTATCGAGATTAATTGATATAGAAATTGGGTTTGTTTAATTTTTATTGATTTTCCTGGCATGAC TAAGAGGTATCATACACTGTTTATTGGTTGTATCCATGGGTACCTGCTTGTATCTAAAAATCTGTTGATGTGGGTACGCG CGGTATGCGGCCTGCCCGGATACAAATATTTGCTCGCGGGGCGGGTGGCGAGTAGCTACTACCCATACCTGCCTGCCCAT TGCCGTCCCTACTGAGAACTGAGATCTGAGATCCGAGAACTCAGTGCATATAATGTTTAAGTTTTGAAAGACATATCCTC AGGTCCCCGAGCCATCAAAGTAGTGAATATAATGTAAAAGTTTTTCACCTTCATCTCTTGTGCTTGTTACATTCTTGCAC TTCAGACTTTAGGAATATTTGTGTATAGCTGATACTGCTGCATGCGAGATAGTTTCCTCTGGCAATCTTAAGTAGAAAGG AACATGCCAGAACCTCAAATAATGGTGACATTGTCATCAATTGATTCCTTCCTAAAGCCATAAGGATATATTATAGCTTT CAGTTAATCAGTGCCGCTAATTTAGTCCATTCACAAATGGAGATTCCAAGAGATAGCATCATCCTTACTATTATATTGCT TCTATTTTTAAAATTTTAGCTTTTCATCTTTCACTATTTTACTTGTTCTCAGAAACTAAGTCGTAAATACGTTCATCTCT CCTAGAAATGAACTCAATTGCTAGGCGTTTATCAAGCTTATTTGGGAAGTCAGCTTGCGCCACTGAACCCTTGAATAGTG GGCGTCATCAACTGCAGCAACTTCAGCAATGCAGAGGCATACGAGTGCGGGTCTTTAATGGGAACTTGGAATCGGCATTG GCATTGATGCAGCGTAAGATGACATCAAGTGGGATCGAGAGGATGATAAAGAAAGAACAGAGATTCCATATCAAAAACTC TGAAAAGCGTGTTTTAGCCCGAAAGAACTTGGAGCGGAGGCTTCGATCCGAGGACCTTGCCCGGAAACTTAAGGCTATTA TGATCAAGAAAGTCAGGTAATTAGTGCCTATATCAAAGAGCAATTTCTTCCATTGAACATAGAAAAATATGCACCTGGCT AAGAAACTTAAGGTCATTATAATAAAAAAGGTAGGTGATTAGCCCCTATATCTGCATATCAATGACCAATTTTTCTCCCT TGTATCGTTGCAAAATATGCTCCTTCATTCTGCATCACATTTTTAAATACATGATGTACGCTAAATTCCTGAAAATATCC TGCAGTGATGTGAATATTTTACATGCCATAATTAATTTGTAACTGCAAAGAATATTCCCCTTGCTATTATTAGTTATTGA CAATAAAATTCCATGCAAGTGTCAAGCTTTTCTCCCTTTTACATAAGCTATTTGGGAAAGGATATCTGAGAGAAAACAGG ATCAAGATAATAAAAATATGCTTACCTTGTAGGTTCATCCTCTCAATCTAGAGCCTACAATATCTGAACATAGTGGTATG TGAATTTTTAGCTGAAGTGAACTAATTTTGCCTGGGATATTATCCCCTGCAATTTCTGACCATAGTGAAATATGAATTTT TTGCTAAAGTGGAAATTCTGGCTTAGTTATTCATTTGGCCTGCAATGTCTGACCTAGAAGGTATTATTTTTGGGTATTTT GATTTGTTCACTAGTCAATTCTAACTTTGGAAGCACTGTTATCCTATATGAAACCTTGAAATGCATGAGGATGCATGTTC TTGGAAACTATTGAAAAAACTCTTGACCTGACATGACATTAGTTATTAAAAAAATTTAAGGATTGAATTGAAGGTGTCAT GAACAAATGATTACAAAAGCTTAAGCTGTTGGGTGAAGACACATGAATGGTTTTATATTATATTCATAACACACCCCTTT ACATAAGAGCTCATTGGGTTTGAAGTGTAGACAATGCACAAACCCACAATTCTTTAGCTGAAATTCAATTTTTTATTAGA ATTAGGGGGCATTAAGGATCGAAATTTAGACCACTTTGTCATAGAGGTTGATTACCAGTTATGAACCAACTATCCCAAAA GTTTAAGCTAATGGAGATATATGAATGGTTTGATATCATATTTCAAACACTTGTTATTGTAAAAAATATAATGATTGGAG GAGAAAACATTAAACTCCTATCCTGGACAAAATCATTTCCAACCAAATGTAAAGGCAATTTTTGGTTATGGCGTTCTCTT ATCAGCTAGTAGTTGTTTCTCCTGGGGTTGCAAGTTGGTGCCATCATCTTTTGAATCAGAAATGTTAACTAATTTCGATT ATGCGGTGTATTCACAACATTGGGTACTTGATAACTGTATTTTGATATTTACTTGTTACCTAGGAACCGTTTATCTTTCT TGTTCCCACTTTCATGGAGGCTTGCCATGTTTTTATTCTTGAGTTTTAATGCGTTAAGAATAGTAGTTAGAATAAAATTA TTCATGTTGTGGATTCAATGCATATTATATCGTGACATCCTGTGGATTTTGTGCTACCTTCATTACCTTTGCCCAAACGA TTTCTTCTGTATTTTGCTTCTATTTGTACTGATGTATTCTATTGTACTGTGACAGGGGTCTTTGAGAATGTTGCACTAAT ATCGGAAAAGATATGGTTGGTAACAGTTGCAGTTATGTGGTTATTTGTTGGTGGCCACCGCAGCTGTCACTTTCTTTCAA ATTGTATGAGGGGGTAGTATGTACTTTGGTAGCTATTATTTTGGGTATCAGATGCATTGTTGCTCTCTCATTAACTAAGA ATAAAGCAAATATTTTGTGATAACTGATAAGAATGGCAATGGTTTTATTTGGCCAAGTCCTGAATCTGGGTGAATACATA TGTTGAATTTCCCAAGTTGTGAAACAGTTTTCAAGCAGTAGTTGTTGTATGCTGCATTAACCTGATAATTTAATGAATTG AAGAAATAGTTTAGTGAATTAATCTCAGCCTGATAAATCTTGTCAACAGCCTGATAATTTAATCTTGTAGATCGAATGTC CTATCTTTGTCATGATAATTTTAGGGGCTAAGCATAGGTATAGAGTCTGTAGACGGTTGGTCTTGGTCCTGTCTCATGGG TGCCCGCCGACTCCTATCTGACTTTGATTGGGAGAACCCGCTTTAACCGTGTTTAGTGAAAAAAATTGAATCTGAACTCG ATTCAATTCTTATATTTTAAATCATTTGAATTGAAATGTGTTTGGTGTAGTTAAAAATATAAGTGAATAAGATTAAGAAA TAAAGTTGAGTTCAAAAAAAGATTAAGAAATAAAGTTGCCAAACCCGATGATGATAAGGTTGAGTATATCCTCGCTTTCT TCAAACCTGTTCTATACTTAGCTGGTCGGGAGGGTGTAATCAGCCCCCTCCCCCAGTCAATAGAAAAAACTAAACCGGTT CATGAGCCATTACATAAGGCTGAAACAAAGGAAAAAAACTCTTATCAACTCAAACAAAATTGAGAAAGGAGCTAGAATTC TAAGCTAGAAAATTGGCAACACCATTACAACTATCACAAACAAACAAACAAAAGCTCAAAAGAGAGATGGTTGCATGATA TCTATCAGTATAAGCATGGATATTCATCACATCATTGCTTATTGATAAAGTTGTAAACCCAAAAGCTAATAGAAGCCATA GCAAAGAGTAAAGGTTTACATTGTAAAAAGTTAATTGAACATTACAAAGACACTGATACTTATACACAAGACTAACTCTT CTAACTAACTAGGAAGTATTTGAAGATTTGGTCCTTGCACTCTAGCTATATTCTAATACTTATCAGTAGACAACCAACCA CACAAAACTGACATACATTTTCTGCTAAATCCAAATAGAGATGATCCTCTATTCTCTGCATCTTCCAACTCCATCTTCTT CTCCTCACTCTCACTCTCACTCTCACTCTCACTCTCCTAACCCTATCCCCTACCGTCACCCAAACACAAACGGTTACATC AAGTTCAGAACAACCTACCGCGAAAACCTTCGTTACCTCACAACATTAACCTTAATCCACCCAAAAACCCAACCCAACAA CCTCCCTCTCCCCGACGCCGTCGACCACATCCTCGCCACCGTCAGCTTCCTCAAATCCCATTCCTTCTCCGACGCCGACA TCCCCCGCCTCGCCCGCCACTTCCCCCACCTATTCTCCACCTCATTCGACCCCATTTCTTTGAATTGCTTTTTACAGGAA AAAGATTTGTTTTTTTTATCTACAGGGAAGGTTAAATGGCTACGCTTTCCGATATTGGGCTTGCGGCTGCCTTGAACATC TTGAGTGCGGTTATTTTCCTTGTGGCGTTTGCTATTTTGAGGCTTCAGCCTTTTAATGATAGGGTGTACTTTCCAAAATG GTACCTCAAGGGTTTAAGAACAGACCCTGTGCACGGAGGAGCGTATATGCGCAAGTTTGTCAACTTAGATTGGAGGTCAT ATATCATTTTTTTGAATTGGATGCCGGCTGCACTCCGAATGCCTGAGCCTGAGCTTATTGACCATGCTGGATTGGACTCT GTTGTTTACTTGAGGATTTACTTGATAGGGTATGAACTATGGAGTATGGACTATGATAGCTTCTATTTTCTCTGAATCAA TTATGGCATCCTGAGTTGGAGTTTGGCTATAGAATATATTGTTCAAGGATTTTCAAACATGCAGTGTGTGAATTTTACAT CAGCATAGGAGAGTACATTCCTGATAATGTTGTGTTTTCTTTGGGCAGGCTTAAAATCTTTGTTCCTATAGCATTCCTGG CATGGGCAGTTCTGGTTCCTGTCAACTGGACAAGTACTGGGCTTGAAGGAACTGGGCTGAAAAACATAACTGCTAGTGAC ATTGATAAAATCTCCGTTTCAAATGTCCAGCGTGGATCTCAAAGGTGTTAACTTTCAACTATCATACAGGGCAATTAAAG TTTTGCTGCTGCTTCTTGACGTTATTTAGTTAATTATTTTCAAGTCTTAAAGAAAGAACCTTCATGTCAAGATATGTTCT TGACCTAATATAGTAATATTTATGGATTTGCTATGATGAGGGCTTTCAGGTCTAGTGTTTAACTAAGGCTAGCCTTAATT TACAGCAAAAATGTCAATCCCTTTGCATCTACTTTCTAGATACTTTGGTTATATCATAATTACTTTTTTTCCTACAACAT CACTTACTTATCCACTCTGTTTATAATTATTATTATTATCTTTCTTTTTATGCACAATCTTGCCTGTTGAAGTTGCAAAA TTACTTATTATGGAGCATTCACATCGCTATTTGAATACATAAGTTATTGTGGGGTGTTGGCTTTTCTAAAATTGTTACTG AATCTTGTGCTGTACTAAAATTTTACCCTCTACCTCAGGTATTGGGCACACATAGTAGTTGCTTATGCATTTACTTTCTG GACATGCTATATTTTGCTGAAGGAGTATGAAAAGGTCACCTCAATGAGATTGGAATTTCTGGCCACACAAAAACGCCGCC CTGATCAATTTTCGGTAAATTTAATCTTTCTCCATTTCTATTTAGGAGTTTTTCTCTGCAAGACTTCTTGGTTTAATATA ATGGCTCACTCTTCTCTTTTCTGTTTTATATATGTACACTCTTTTATCTTTTTTGGGCAACTTTGAGATGGGGCAATGGA ATTCTAGTTTTATGTTACTTGTGTTAGGGTGGCATGCTACTTACTCATATGTCTAGGTAGATCTCTATTGTATGTTTTAC ACTTTTCTGTTCTAAAAAAATGTAAATTACTGGTGTGGATTTGCTAGTCATTAGGCTAGCATAATAATAAACTGGCGAGT GGCGATAAGTGGGCAAAGCAATGGTGAAAAAAATGTCGATTACTGGTGTGGATTTGCTAGTCATTAGGCATTTAGGCTAG CATAATTTCAACACATCTTTAATCTGTCAGCATCTTTATGCTTGATAAGTTTGGTGAAATTGCAATTATTGGTTAAATTT TCCCATGTTAACTTCAAGATATATGGGATATTTCTTCATGATATTTTGCTTATCAAAATGTTATTTTCAGGTGCTTGTTA GAAACATTCCACCAGATGCTGATGAATCTGTTAGTGAGCTTGTGGAGCACTTTTTTCTAGTCAATCATCCGGAAAACTAT CTTACTCACCAGGTTGGTTGCTATACACTTTACTCCCAAAATATCATGTTCATTAATCATCTCAATGATTTTGGTATTTG TGAATTTAAGAAACTTCGTGTGAAACATACTTCGCAAGTTTCAGATTTTGCTGCAATGTTAAATTCCTAATTGTCAAATT GATTATAAAATGATGTATGTGAATTGTGAAACAGAGTGCATTAGGAAGTAAATTTTTTAGGGAAGTTAATTTATCCTCAA ATCATTTGGGGTGGGAGAGTAACACCCAGATTTCTCGAGGGTTAGAATCGTAAGGTTGAACAAATTATAAAGACAATAAT GGCAGTGAAAATTTGAATCAAATAAAAACCTTCATTAAAAGAGAGCCAAGAAGGAAATAATCCAAACCTCAAGAGAAAAT AATGAAACTAAGTCACCCCTCCCGAATCAATGCACATGAAGAAACTCAAAGATGGAGATGACCCTAATAACGGAAAGCGA TAAAAGTTAATGGAAGAGTACAGACTCGATCAACTGACGACCATAAACCCACTATAAACCTGAACTCCTAGGAACCCTAC GTCGAACCGTAGAGGGAATCGAAACACTTACGCGTGGGAGAAAGAGGGATAGGCGATAACAATGAAACACCCAGCCTCGA CCCAAAAGAGGCGACAATAAGGACGGAAGGTATCCATGGATAAGGATGGAAGCTCCTAACGAGGGGGGAATGGAGGCTTG GAACGACAAAGAAGGATGTAGTGTTCCGGATGGGGTGGGTTCGAAGGAGGGAGAAGGAAAGGATTAGGTGTTCTGGACTT GGAACCCTAGATGAGGGAGATGAATCTTCTGGAGCTTTTGAGTTTTGATTTCGTTGGGAGAGATGGGTATAATCTGAAAT GGTTTAATTCAATTGAATGGTATATGGATGGGTAGATGGGGTAAGTTGGGGTAAGTTTGGGTAGATCTGATTAACATTAA TGGTGGTTAATTTTTTTTAAAATTTTTTTTTTTTACTTCTAATTATTTACCTTACTTAATTAAGGTAAATAATTACCACC TGGGTTAATCTTATATTAATCCTAATTATTCTCTAATTATTTACTGAATAATTGTATCATATAATAACTATTTTATTTTT CAAAATAACTAAAAAATACAAAAAACCTGATGTACCAGGTCAAAAGCAAAATGTGTAACTTTACACAACTTTTTACATGA TCATAATAAATTTTCCCATTTTTTTTTGCCTTTTTTCTACTTTCCTGAACACATACAGTGTCAGTGAAGACTTTTCAACA TCTAATTTCACTTTTCTGCACCAATTCAAGTTAGGAGTATACTTTACATCACTTTTCTGGCCAAATTGCTCCATATATAA GGCCCTCCAATTGAGATTTTTGTGGCCCTCCATATATCATGCTTTCACATTTCATGGGTATCTTGGTTTTTCTTGTGATA TATACAAAAATGCTGTTTTTTTATCACTGTTATCATAGATTTGTTTGTTATGAAGTGAAGCTTTGTTGTGTGTTATAGCT ACTAAAGGTGTAGATTTTATTGGGTGGTTAATATAAGATTGTGAATGATGTGCAGCTTGAGGAGGCAGAGAAAAGGTTGC AGGATTCTGAATCGAAATTGGCTCGCCTTCGAGGTCCAGCCAATGCAGTTTCGTCTAGGAAAAATAACAGCTTGGATGAT GGGATTAAACCGGTGAAAATGGAGCGGCGATCAAGCAGTCCTCCAGATAATATGAAAACGTTGGTTCTGGATTCTTACAG CGGGGATTCTGATCCGAAGGATCATCTTC
CDS sequence (LotjaGi4g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCAATTGCTAGGCGTTTATCAAGCTTATTTGGGAAGTCAGCTTGCGCCACTGAACCCTTGAATAGTGGGCGTCA TCAACTGCAGCAACTTCAGCAATGCAGAGGCATACGAGTGCGGGTCTTTAATGGGAACTTGGAATCGGCATTGGCATTGA TGCAGCGTAAGATGACATCAAGTGGGATCGAGAGGATGATAAAGAAAGAACAGAGATTCCATATCAAAAACTCTGAAAAG CGTGTTTTAGCCCGAAAGAACTTGGAGCGGAGGCTTCGATCCGAGGACCTTGCCCGGAAACTTAAGGCTATTATGATCAA GAAAGTCAGGGGTCTTTGA
Protein sequence (LotjaGi4g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSIARRLSSLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTSSGIERMIKKEQRFHIKNSEK RVLARKNLERRLRSEDLARKLKAIMIKKVRGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 111 | 111 | 2.2E-47 | – | |
| PANTHER | 1 | 111 | 111 | 2.2E-47 | – | |
| Pfam | 40 | 93 | 54 | 2.1E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi4g1v0011300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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