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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011700 |
| Transcript ID | LotjaGi4g1v0011700.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ERD (Early-responsive to dehydration stress) family protein; TAIR: AT1G11960.2 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|B5TYT3|CSCL7_ARATH CSC1-like protein At1g11960; TrEMBL-Plants: tr|G7KK36|G7KK36_MEDTR ERD (Early-responsive to dehydration stress) family protein; Found in the gene: LotjaGi4g1v0011700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1470048..1474369) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACGCTTTCCGATATTGGTCTTGCAGCTGCCTTGAACATCTTGAGTGCGGTTATTTTCCTTGTGGCGTTTGCTAT TTTGAGGCTTCAGCCTTTTAATGATAGGGTGTACTTTCCAAAATGGTACCTCAAGGGTTTAAGAACAGACCCTGTGCACG GAGGAGCGTATATGCGCAAGTTTGTCAACTTAGATTGGAGGTCATATATCAGGTTTTTGAATTGGATGCCGGCTGCACTT CGAATGCCTGAGCCTGAGCTTATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGGTATGA ACTATGGAGTATGGACTATGATAGCTTCTATTTTCTCTGAATCAATTATGGCATCCTGAGTTGGAGTTTGGCTATAGAAT ATATTGTTCAAGGATTTTCAAACATGCAGTGAGTGAATTTTACATCAGCATACATAGGAGAGTACATTCCTGATAATGTT GTGTTTTCTTTGTGCAGGCTTAAAATCTTTGTTCCTATAGCATTCCTGGCATGGGCAGTTCTGGTTCCTGTCAACTGGAC AAGTACTGGGCTTGAAGGAGCTGGGCTGAAAAACATAACTTCTAGTGACATTGATAAAATCTCCGTTTCAAATGTCCAGC GTGGATCTGAAAGGTGTTAATTTTCAACTATCATTCAGGGCAATTAAAGTTTTGCTGCTGCTTCTTGACGTTATTTAGTT AATTATTTTCAAGTCTAAAGAAAGAACCTTCATGTCAAGATATTTTCTTGACCTAATATAGTAATATTTATGGATTTGCT ATGATGAGGCTTTCAGGTCTAGTGTTTAACTAAGGCTAGCCTTAATTTACAGCAAAGATGTTAATCGCTTTGCATCTACT TTCTAGATACTTTGGTTATATCATAATTACTTTTTTTCTTACAACATCACTTACTTATCCACTCTGTTTATAATTATTAT TATTATCTTTCTTTTTATGCACAATCTTGCCTGTTGAAGTTGCAAAATTACTTATTATGGAGAATTTACATCGCTATTTG AATACATAAATTATTGTGGGGTGTTGGCTTTTCTAAAATTGTTACTGAATCTTGTGCTGTACTAAAATTTTACCCTCTAC CTCAGGTATTGGGCACACATAGTAGTTGCTTATGCATTTACTTTCTGGACATGCTATATTTTGCTGAAGGAGTATGAAAA GGTCACCTCAATGAGATTGGAATTTCTGGCCACACAAAAACGCCGCCCTGATCAATTTTCGGTAAATTTAATTTTTCTCC ATTTCTATTTAGGAGTTTTTCTCTGCAAGACTTCTTGGTTGAATATAATGGCTCACTCTTCTCTTTTCTGTTTTATATAT GTACACTCTCTCTTATCTTTTTTGGGCAACTTTGAGATGGAGCAATGAAATTATAGTTTTATGTTACTTGGGTTAGGGTG GCATGCTACTTACTCATATGTCTAGGTAGATCTCAATTGTATATTTTATACTTTTCTGTACTAAAAAAAATGTAGATTAC TGGTGTGGATTTGCTAGTCATTAGGCTACCATAATAATAAACTGGCGAGTGGCGATGTATATCAGGCAATAAGTGGGCAA ACCAATGGTGGAAAAAAATGTAGTTTACTGGTGTGGATTTGCTTAGGCTAGCATAATTTCAACACATCTTTAATCTGTCA GTATCTTTATGCTTGATAAGTTTGGTGAAATTGCAATTATTGGTTAAATTTTCACTTGTTAACTTCAAGATATATGCGAT ATTTCTTCATGATGTTTTGCTTATCAAAATGTTATTTTCAGGTGCTTGTTAGAAACATTCCACCAGATCCTGATGAATCT GTTAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAATCATCCGGAAAACTATCTTACTCACCAGGTTGGTTGCTATACACT TTACTCCTAAAATATCATGTTCATTAATTATCTCAATGATTTTGGTATTTGAGAACTTAAGAAATGCTGCAATGTTAAAT TCGTAAATTGTCAAATTGATTATGAAATGATGTATGTGAAACAAAGTGCATTAGTAAGTATATTTTTTAGGGAAGTTAAT TTATCCTCAAATCATTTGGGGAGGGAGAGTAACACCCCAATAAATTCCTGTCAACCCATAAATAAGATAGTATTTTCAAA TTAAATTATATCTCCTTTTTAATAATAATTCAACCATTTATCATTTACGATATGCACATATATATGTATGTATTTTTTTT CAATTTTTATCTCTTATCAATCTTATTACTAATTTAAACCCCAAATAAATATTTCCCCTAGGAAATATATACATATGCCA CCCATATGTCACTTAAAATAAGGAAATTTTTTTCCTTTCCACCAAGTAATTCCTTTCCACCAAAATATTACTTCCTCCAA TTAAATAAATAACAAACCAAAATCAAACAATAATTCTCCTTAGAGAATTTATATAATTTACGCATATATATAATTATTTA ATAAATACTAAATTACCCAAATGCCCTTGAATATTTTTCAGGGTCTTACAGGGAGAGAATAGGATATCTCTGAATATTTA TTGTGATATTATGCAGGTCGTTTACAAGGCAAATACACTGGCTAAGTTGGTTAAGAAGAAGAGTAAGTTGCAGAATTGGC TCGTCTATTATCAAAATAAATTTGAAAGGACTTCAAAAAGACCTGAAACAAAGGTGCATAAACTTTAACTTGATATGCTT CCAAAAGTTTTGATAGCTATCATCGGATTAACCCCAATCTTTCCTTCTTATTTACCAGACTGGTTTCCTTGGTTTTCGTG GAAAAAAAGTCGATGCTATTGATTATTACACCACTGAAATCGACAAGCTGTCTGAAGAAGTAAGTACCATTGTTTTTTCT TTAGTTATAAATTTTAGCGCACACTGCATGCAAATATTTTTTAACATAGGATTATGCCAATAATATATTGAAAAAATCTA TTAATTATTTTTACATGGGAATCAAATGTTAGTTTTGCAAATTCATGTACTGACAGACTATGATATACCTAATTTGACTA GTATCTTTTATCTTTATCTTTATCATACACACATCATATTTGTTCTGCTTTCAAGGAGTTATTTCCTTATCTAACAGCTT CATAACTTCTTGCCTGCACCTATTATTGCAATATGTATTTTTCTCATTATTCATTAATGCTTTCACGAAATAAAATTTGG AAGACCTGAACAGATACTGAAAGAACTTCTTAGCCATAAAATTTATATTATGATAAAATCTGCAGAAACTGTGAACCTTA TTGTTGTGATTCCATAACCTTTCTGTTTTTTGAAATTCTCAATGATGCTTACAGTGATTGAAGCTTATTATCTTTCGCAG ATAGCTTTAGAGAGGGATAAGGTCACTCATGATCCCAAGTTTGTCATGCCTGCTGCATTTGTTTCCTTTAAATCGCGATG GGGTGCTGCAGTTTGTGCGCAAACTCAACAAACCAGAAATCCAACACTTTGGTTGACTGAATGGGCTCCAGAGCCACGCG ATATCTATTGGCCAAACTTGTCAATTCCATATGTTTCCCTTACTATTAGAAGGTTGATCATGGCTGTTGCATTCTTTTTT CTCACCTTCTTTTTTATGATCCCCATCGCATTCGTACAAACTCTTGCAAGTCTTGATGGACTCGAGAAAAAAGCACCATG GTTGGAGCCGCTTCTTAAAATGTAAGTGTAATCTCCTAGTTAGATCTACAATTTCACATCACTGGATATTATTTACTTGA ATTTACTTTATTGTGCAGGAAATTCATTAAGTCATTTGTTCAAGGTTTTCTACCTGGTATTGTATTGAAGCTTTTTCTCA TCTTTCTGCCAACAATACTGATGATCATGTCAAAATTCGAAGGCTTTGGATCTATATCATCTCTGGAGAGAAGATCAGCT TCTAGATATTATCTTTTTAATTTTGTGAATATATTTCTTGGGAACATACTTGCTGGGTCAGCATTTCAACAGCTGGACAC TTTCATTCATGAATCAGCCAATCGGTAAGTCCTTAAAAATGATTCGCATTTTTAATTGGCACTGTATTCCTGTGCCTTTG GGTGCATATATATGTTATGCTACACCTAAAAGCTTGCATGGGTTGTGGATATCTTGTGTTATGTCTGGTCAACTTATTAT GACATGTACAAGAAGGGTTTTTGTACTTCTGCATGTGCTTTAGCTAGTTAAGAACGGTGATGTTAGTTTTCTGAATAGTT GAATCTTTTTACAGGCTGTTCTCTGACTAATTGTCTCAATTAATACCATGTCAATATGACTAACTAAGCATTCTTTTTAT AT
CDS sequence (LotjaGi4g1v0011700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACGCTTTCCGATATTGGTCTTGCAGCTGCCTTGAACATCTTGAGTGCGGTTATTTTCCTTGTGGCGTTTGCTAT TTTGAGGCTTCAGCCTTTTAATGATAGGGTGTACTTTCCAAAATGGTACCTCAAGGGTTTAAGAACAGACCCTGTGCACG GAGGAGCGTATATGCGCAAGTTTGTCAACTTAGATTGGAGGTCATATATCAGGTTTTTGAATTGGATGCCGGCTGCACTT CGAATGCCTGAGCCTGAGCTTATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGGCTTAA AATCTTTGTTCCTATAGCATTCCTGGCATGGGCAGTTCTGGTTCCTGTCAACTGGACAAGTACTGGGCTTGAAGGAGCTG GGCTGAAAAACATAACTTCTAGTGACATTGATAAAATCTCCGTTTCAAATGTCCAGCGTGGATCTGAAAGGTATTGGGCA CACATAGTAGTTGCTTATGCATTTACTTTCTGGACATGCTATATTTTGCTGAAGGAGTATGAAAAGGTCACCTCAATGAG ATTGGAATTTCTGGCCACACAAAAACGCCGCCCTGATCAATTTTCGGTGCTTGTTAGAAACATTCCACCAGATCCTGATG AATCTGTTAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAATCATCCGGAAAACTATCTTACTCACCAGGTCGTTTACAAG GCAAATACACTGGCTAAGTTGGTTAAGAAGAAGAGTAAGTTGCAGAATTGGCTCGTCTATTATCAAAATAAATTTGAAAG GACTTCAAAAAGACCTGAAACAAAGACTGGTTTCCTTGGTTTTCGTGGAAAAAAAGTCGATGCTATTGATTATTACACCA CTGAAATCGACAAGCTGTCTGAAGAAATAGCTTTAGAGAGGGATAAGGTCACTCATGATCCCAAGTTTGTCATGCCTGCT GCATTTGTTTCCTTTAAATCGCGATGGGGTGCTGCAGTTTGTGCGCAAACTCAACAAACCAGAAATCCAACACTTTGGTT GACTGAATGGGCTCCAGAGCCACGCGATATCTATTGGCCAAACTTGTCAATTCCATATGTTTCCCTTACTATTAGAAGGT TGATCATGGCTGTTGCATTCTTTTTTCTCACCTTCTTTTTTATGATCCCCATCGCATTCGTACAAACTCTTGCAAGTCTT GATGGACTCGAGAAAAAAGCACCATGGTTGGAGCCGCTTCTTAAAATGAAATTCATTAAGTCATTTGTTCAAGGTTTTCT ACCTGGTATTGTATTGAAGCTTTTTCTCATCTTTCTGCCAACAATACTGATGATCATGTCAAAATTCGAAGGCTTTGGAT CTATATCATCTCTGGAGAGAAGATCAGCTTCTAGATATTATCTTTTTAATTTTGTGAATATATTTCTTGGGAACATACTT GCTGGGTCAGCATTTCAACAGCTGGACACTTTCATTCATGAATCAGCCAATCGGCTGTTCTCTGACTAA
Protein sequence (LotjaGi4g1v0011700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLSDIGLAAALNILSAVIFLVAFAILRLQPFNDRVYFPKWYLKGLRTDPVHGGAYMRKFVNLDWRSYIRFLNWMPAAL RMPEPELIDHAGLDSVVYLRIYLIGLKIFVPIAFLAWAVLVPVNWTSTGLEGAGLKNITSSDIDKISVSNVQRGSERYWA HIVVAYAFTFWTCYILLKEYEKVTSMRLEFLATQKRRPDQFSVLVRNIPPDPDESVSELVEHFFLVNHPENYLTHQVVYK ANTLAKLVKKKSKLQNWLVYYQNKFERTSKRPETKTGFLGFRGKKVDAIDYYTTEIDKLSEEIALERDKVTHDPKFVMPA AFVSFKSRWGAAVCAQTQQTRNPTLWLTEWAPEPRDIYWPNLSIPYVSLTIRRLIMAVAFFFLTFFFMIPIAFVQTLASL DGLEKKAPWLEPLLKMKFIKSFVQGFLPGIVLKLFLIFLPTILMIMSKFEGFGSISSLERRSASRYYLFNFVNIFLGNIL AGSAFQQLDTFIHESANRLFSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 499 | 497 | 2.6E-290 | – | |
| PANTHER | 3 | 499 | 497 | 2.6E-290 | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 7 | 179 | 173 | 1.6E-48 | ||
| TMHMM | 10 | 28 | 19 | - | – | |
| Phobius | 29 | 100 | 72 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 157 | 37 | - | – | |
| Phobius | 158 | 177 | 20 | - | – | |
| TMHMM | 158 | 177 | 20 | - | – | |
| Phobius | 178 | 373 | 196 | - | – | |
| Pfam | 200 | 361 | 162 | 8.7E-45 | ||
| Pfam | 372 | 494 | 123 | 1.7E-31 | ||
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 374 | 398 | 25 | - | – | |
| Phobius | 399 | 417 | 19 | - | – | |
| Phobius | 418 | 445 | 28 | - | – | |
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 446 | 465 | 20 | - | – | |
| TMHMM | 466 | 488 | 23 | - | – | |
| Phobius | 466 | 485 | 20 | - | – | |
| Phobius | 486 | 502 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0011700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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