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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011700 |
| Transcript ID | LotjaGi4g1v0011700.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ERD (Early-responsive to dehydration stress) family protein; TAIR: AT4G04340.1 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|Q9XEA1|CSCL5_ARATH Protein OSCA1; TrEMBL-Plants: tr|A0A151SU28|A0A151SU28_CAJCA Putative membrane protein C2G11.09; Found in the gene: LotjaGi4g1v0011700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1474479..1475727) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGAAACCACTAATCATATATCACTTGAAGAATTTCTTCTTGGTGAAGACAGAAAAAGACAGGGAAGAGGCCATGGA TCCTGGTAGTATTGGTTTCAACACTGGAGAACCTCGTATACAATTGTACTTTTTGCTGGGTCTAGTCTATGCTGCAGTGA CACCCACTGTTCTTCCTTTTATCATAATATTCTTTGGGTTGGCCTATGTTGTGTTCCGTCATCAGGTACTAAGATGTTAG AATTATATTTCTACATGTCAATTATGATTATATGATTCCCGTTCTCTATTTTTGTTGCCATATATCAGATTAAAACTCCT ACCTTCCAATTGCAGATAATCAATGTTTATAATCAACAGTATGAAAGTGGTGCAGCATTCTGGCCTGATGTTAATTTTCG TGTTGTTATGGCACTGATAGTCTCCCAGATAGTTCTGATGGGACTCTTGACCACCAGAAAGGCTGCTTCATCAACTCCAT TTCTCATTGTGCTCCCAATCCTGACCATATGGTTTCATAGATACTGCAAAGGCCGTTTTGAATCTGCATTTGTTAAATTT CCCTTGCAGGTATTTCAATTAGTCATTTGGATAGTTAATAATCCTTTGAAGTAGTTCTTTGTGTTGATGGTGGTTTGTTC ATTCAATTATCGTCTGCTCATTAATTAGATATTCCTATAATCATGTACAATTCCAATGTTTAAACTTCATCACACCCCAT ATACACCTCATTTTTCTCTCGTTCTTTCTTTCTATCACATCATATCATATATCACAGCTATCACTTCTGCTTCTGCTTTA AGCATGTTTGGTTATACTGTGAAATGCTGTAGAATCATTTCTGATTTGAAGCTTCAAGTCTTAGCTTCTGAGCGGACTTG CTTTAGATATTGTGCAAATTGTGAAACCCAACACCTGCTAAATCTGCATCCTTTGTTTCCTGTGTCAGAAATTTGATGTT GCCTTTGTAAATTTGTATACAGGAAGCAATGATGAAAGATACGTTAGAACGAGCTACAGAACCTAACCTGAACTTGAAAG GTTACCTTCAGAATGCCTATGTCCATCCAGTATTTAAGGCTAGCATGGAGGATGAGGAGGAGGATGATGTAATGAGTCAT AAGTGGGATAGTGAGAGTGTTACTGTGCCCACAAAACGCCAATCACAAAGGAACACACCATTGCCCAGCAAAGTTAGTGG TGCATCATCTCCATCTCTGCCTGATATTCGACATAATCCAGAGCCATAA
CDS sequence (LotjaGi4g1v0011700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAACCACTAATCATATATCACTTGAAGAATTTCTTCTTGGTGAAGACAGAAAAAGACAGGGAAGAGGCCATGGA TCCTGGTAGTATTGGTTTCAACACTGGAGAACCTCGTATACAATTGTACTTTTTGCTGGGTCTAGTCTATGCTGCAGTGA CACCCACTGTTCTTCCTTTTATCATAATATTCTTTGGGTTGGCCTATGTTGTGTTCCGTCATCAGATAATCAATGTTTAT AATCAACAGTATGAAAGTGGTGCAGCATTCTGGCCTGATGTTAATTTTCGTGTTGTTATGGCACTGATAGTCTCCCAGAT AGTTCTGATGGGACTCTTGACCACCAGAAAGGCTGCTTCATCAACTCCATTTCTCATTGTGCTCCCAATCCTGACCATAT GGTTTCATAGATACTGCAAAGGCCGTTTTGAATCTGCATTTGTTAAATTTCCCTTGCAGGAAGCAATGATGAAAGATACG TTAGAACGAGCTACAGAACCTAACCTGAACTTGAAAGGTTACCTTCAGAATGCCTATGTCCATCCAGTATTTAAGGCTAG CATGGAGGATGAGGAGGAGGATGATGTAATGAGTCATAAGTGGGATAGTGAGAGTGTTACTGTGCCCACAAAACGCCAAT CACAAAGGAACACACCATTGCCCAGCAAAGTTAGTGGTGCATCATCTCCATCTCTGCCTGATATTCGACATAATCCAGAG CCATAA
Protein sequence (LotjaGi4g1v0011700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKPLIIYHLKNFFLVKTEKDREEAMDPGSIGFNTGEPRIQLYFLLGLVYAAVTPTVLPFIIIFFGLAYVVFRHQIINVY NQQYESGAAFWPDVNFRVVMALIVSQIVLMGLLTTRKAASSTPFLIVLPILTIWFHRYCKGRFESAFVKFPLQEAMMKDT LERATEPNLNLKGYLQNAYVHPVFKASMEDEEEDDVMSHKWDSESVTVPTKRQSQRNTPLPSKVSGASSPSLPDIRHNPE P
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 232 | 232 | 5.4E-128 | – | |
| PANTHER | 1 | 232 | 232 | 5.4E-128 | – | |
| Pfam | 2 | 113 | 112 | 1.2E-29 | ||
| Phobius | 42 | 72 | 31 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 112 | 20 | - | – | |
| TMHMM | 94 | 113 | 20 | - | – | |
| Phobius | 113 | 117 | 5 | - | – | |
| Phobius | 118 | 135 | 18 | - | – | |
| TMHMM | 118 | 135 | 18 | - | – | |
| Phobius | 136 | 241 | 106 | - | – | |
| MobiDBLite | 194 | 241 | 48 | - | – | |
| MobiDBLite | 203 | 232 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0011700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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