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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0015100 |
| Transcript ID | LotjaGi4g1v0015100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G11700.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|O26342|RFCL_METTH Replication factor C large subunit; TrEMBL-Plants: tr|A0A0L9TTH9|A0A0L9TTH9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0015100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1897444..1899122) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAAAATAATAACTAATGAGTCATTTGGAGTGTAGTGCAGCCTTTGTTTGTCTTGTATTCACTTTTCACGTCACTAAC ATAACATAGGAGGAAATGCATAGAAAATGAATGCGAAACTCAAATTCAAATGAAATGGGAGATGAAGCGATCGAAAGAAA AGGCTATAAATACACATCGACCACAACTCACACTGCTTATGCCAAACCAAACCTAACCCAGGTTCGGTTCCGAAGGGAAC TTTGTAGTGTAATCAAATCTTGGTTCGGGTGCCTTGGTTTGGTTTGGCAGATAAGCTAAATGGCCAAAGGTCGCAGGTTC AGCTCCAACCGAACCGAACGTTTGTTGGGAACCGCCTACACCGCCCAAGGCTCCACCGTCTCCGTCACCGACCCGTCGGA GTTCCGGGAAGAGGATGTGTGGTCCACGGCGGAAGACCACGACATGAATGTCTACCACGACGGCGATTGGGAGTCACGTG CCACGCATCGTGCTCGGAATCGTGAGCTGGAGGAGCAGCACCGCCAATTGGGCGGTTTGTCGATGGCGTTTGAGGATCCG GCGGGGAGGATGATGACCACGGCAACGTCGTCGTCGAGGATCGTGCAGCAGCACCAGTACCACCGGTCGCAGCGGCACCA CCACGTGGCCACGTCAGCGCCGGTGAACGTTCCCGATTGGAGCAAGATACTCCGGGTCAACTCGGTGGAATCGCTTCACG ACGGTTTCGACGATGACGGTGATAACGAACCGGAGATGGTTCCGCCGCACGAGTACTTGGCGCGGAGCCGGAAAATGGCG GCAAATTCGGTTTTCGAGGGCGTTGGCCGCACGTTGAAGGGCCGTGACATGAGCCGGGTTCGGGATGCTGTGTGGAGCCA GACCGGGTTCAATGGCTGAACCGTTCGATCCCTCTGCTTTCCAATTCAATATTCCTCTCCTTATTAATTTTGACCAATCA GATTTAAGGTTGGCAGTTAATTAAAAAAAAAAAGAGAGAAAGAAAGAAATAGAATTAGCTTCTTTTTATTTTTCCTTTTA ATTTTCACTCCTTTTGAGTTGTCAAAATTGGATTTGGGGTTATAGTTTAGCGCTGTGTGGCGAGTATGTGTATGGAAAAT ACCAATGAACTTACATATAGTAGGGAGTCTCGTCAAATTGAAGTATTTAATAGTTGTTTTGAAAAGATCGGTCAACATCT TATGTACTCAGAATTGGAACCAAACATGTCCTTATAGTGCATTTGGAATTGGGCGATTTCATAAGCTACTAGAAGTGATT ATGGTTCCCTGCAGCAGAAACCAAAGGCATCAGAATTTGATGATCTCATCCTCATACAATGAAAGCTGTAATCCCGTTTT TGGATAAATTTGTATCTCTGTTAAGAAAGGATGTGATATCATAGAATGTGAAGAGGAAATTGATCCCCATTTGTGGATAA TTTTGTATTATTGCGGTTCATCTGTTTGTTTATAGTGAAATTTTAATGCACAAGAATATAAAGCAAGGCATCATTTATTG ATAGTTTAATTCATGAGATTTGAATAATATTTGAGGGGTTGGATTGAAAAAAGCATGAAGAAGCATATGCCGACTTTGAC TTAAGAAAGTGTCCTTAGGGAACTTTGGTTTGGTTGGTTATTATGCAAATAATAAGAATCACATATATTCTTTTATTAA
CDS sequence (LotjaGi4g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAGGTCGCAGGTTCAGCTCCAACCGAACCGAACGTTTGTTGGGAACCGCCTACACCGCCCAAGGCTCCACCGT CTCCGTCACCGACCCGTCGGAGTTCCGGGAAGAGGATGTGTGGTCCACGGCGGAAGACCACGACATGAATGTCTACCACG ACGGCGATTGGGAGTCACGTGCCACGCATCGTGCTCGGAATCGTGAGCTGGAGGAGCAGCACCGCCAATTGGGCGGTTTG TCGATGGCGTTTGAGGATCCGGCGGGGAGGATGATGACCACGGCAACGTCGTCGTCGAGGATCGTGCAGCAGCACCAGTA CCACCGGTCGCAGCGGCACCACCACGTGGCCACGTCAGCGCCGGTGAACGTTCCCGATTGGAGCAAGATACTCCGGGTCA ACTCGGTGGAATCGCTTCACGACGGTTTCGACGATGACGGTGATAACGAACCGGAGATGGTTCCGCCGCACGAGTACTTG GCGCGGAGCCGGAAAATGGCGGCAAATTCGGTTTTCGAGGGCGTTGGCCGCACGTTGAAGGGCCGTGACATGAGCCGGGT TCGGGATGCTGTGTGGAGCCAGACCGGGTTCAATGGCTGA
Protein sequence (LotjaGi4g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGRRFSSNRTERLLGTAYTAQGSTVSVTDPSEFREEDVWSTAEDHDMNVYHDGDWESRATHRARNRELEEQHRQLGGL SMAFEDPAGRMMTTATSSSRIVQQHQYHRSQRHHHVATSAPVNVPDWSKILRVNSVESLHDGFDDDGDNEPEMVPPHEYL ARSRKMAANSVFEGVGRTLKGRDMSRVRDAVWSQTGFNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 199 | 194 | 1.9E-77 | – | |
| PANTHER | 6 | 199 | 194 | 1.9E-77 | – | |
| Pfam | 33 | 197 | 165 | 7.8E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0015100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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