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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0020000 |
| Transcript ID | LotjaGi4g1v0020000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxiredoxin, putative; TAIR: AT1G48130.1 1-cysteine peroxiredoxin 1; Swiss-Prot: sp|Q6E2Z6|REHY_MEDTR 1-Cys peroxiredoxin; TrEMBL-Plants: tr|I3SM62|I3SM62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0020000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2507180..2508547) extracted from Lotus japonicus Gifu genome v1.2.
ATCACAGAACCCAAAACAAGTTTCAGAATCAGAGCAACTTCTTCTCAAAATGCCAGGCCTCACCATCGGAGACACCATTC CTAACCTTGATGTTGAAACCACCAATGGCAAATACAACCTCCACAAGTTCTGTTCTGATAGCTGGACCATCCTCTTCTCC CATCCAGGTTCTCATTGGATTTCAAATTGCTTAATTTGTGTTGATTCTTTTGGTTTGTTGTTTTCATTTTTATATACATA TGATCATGTATGTGTCTTTAGGTGATTTCACTCCTGTTTGTACCACTGAGCTTGGTAAGATGGCTCAGTATTCCAAGGAG TTTTATCAAAGAGGAGTGAAGCTTTTGGGCATGTCCTGTAATGACATTAAATCCCATAATGAGTGGATCAAAGACATTGA AGCCTACACAGTGAGTTTTTTTCCAGTTTTCACAACCCTCAGAGCATACTCTATTTCTGTTTCACTTGAGGAGGATCTAA TTAAGTTTGTTTGTTTATTTGTTGCATGCAATTGCAGTCAGGTGCAAAGGTGGACTATCCAATCATTGCTGATCCAGAAA GAGAACTCATCAAGCAACTCAACATGGTTGACCCTGATGAGAAAGACTCCAATGGTAACTTACCCTCCAGGGCTCTTCAC ATAGTGGGGCCAGATTTGAAGGTGAAAATTTTCCTCAGAAATTCAAATAGTTTGCATTTTTTTCCTCTTTTGTGCAGTGT TGGACTAATATGCAAATTGGGTATTTCATTGCAGATCAAGTTGAGTTTTCTGTATCCTGCAACTACTGGCAGGAACATGG ATGAAGTGCTGAGGGTGGTGGAGTCACTGCAGAAGGCCTCAAAATTCAAGGTTGCAACACCAGCAAATTGGAAGCAAGGG GAACCTGTTGTGATTCAACCTGGTGTGACTAATGAGCAAGCTAAGGAGATGTTTCCTCAAGGTTTTGAGACCAAAGATCT TCCATCCAAAAAGGAATACTTGCGTTTCACCAAAGTAAACTAGTTTGATGTGCTTAACCTTTTCAGCTAATGCCATCTAG TTGTATATCTACCCTGATGAAATTATGTGTAGTAAGAGTACACTCTTTTGTATGTGCTTTTTGTTATGTTATATATATGA AAGACTATACTTTATGTATCCTTTTGTTGATGTCTATGGTTTCCATGCTGTAAAAATCCCTTAACTAGTAAGTTTCAATT AAACTAGTTTGTTCCTTCAATTTGAAGTTACTTTATTTTGGTCTTGTAATTGACTAGAGTAAATTATTAGCAATTAACAT TGAGATATAAACCAACCTATTACATGGGAGTTTATTCAGTTTTGTTGTTCATAAACATAATTTCTTAGCTTACCTACATG GGGAACAG
CDS sequence (LotjaGi4g1v0020000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGCCTCACCATCGGAGACACCATTCCTAACCTTGATGTTGAAACCACCAATGGCAAATACAACCTCCACAAGTT CTGTTCTGATAGCTGGACCATCCTCTTCTCCCATCCAGGTGATTTCACTCCTGTTTGTACCACTGAGCTTGGTAAGATGG CTCAGTATTCCAAGGAGTTTTATCAAAGAGGAGTGAAGCTTTTGGGCATGTCCTGTAATGACATTAAATCCCATAATGAG TGGATCAAAGACATTGAAGCCTACACATCAGGTGCAAAGGTGGACTATCCAATCATTGCTGATCCAGAAAGAGAACTCAT CAAGCAACTCAACATGGTTGACCCTGATGAGAAAGACTCCAATGGTAACTTACCCTCCAGGGCTCTTCACATAGTGGGGC CAGATTTGAAGATCAAGTTGAGTTTTCTGTATCCTGCAACTACTGGCAGGAACATGGATGAAGTGCTGAGGGTGGTGGAG TCACTGCAGAAGGCCTCAAAATTCAAGGTTGCAACACCAGCAAATTGGAAGCAAGGGGAACCTGTTGTGATTCAACCTGG TGTGACTAATGAGCAAGCTAAGGAGATGTTTCCTCAAGGTTTTGAGACCAAAGATCTTCCATCCAAAAAGGAATACTTGC GTTTCACCAAAGTAAACTAG
Protein sequence (LotjaGi4g1v0020000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGLTIGDTIPNLDVETTNGKYNLHKFCSDSWTILFSHPGDFTPVCTTELGKMAQYSKEFYQRGVKLLGMSCNDIKSHNE WIKDIEAYTSGAKVDYPIIADPERELIKQLNMVDPDEKDSNGNLPSRALHIVGPDLKIKLSFLYPATTGRNMDEVLRVVE SLQKASKFKVATPANWKQGEPVVIQPGVTNEQAKEMFPQGFETKDLPSKKEYLRFTKVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 5.7E-123 | – | |
| PIRSF | 1 | 218 | 218 | 1.0E-70 | ||
| PANTHER | 1 | 218 | 218 | 5.7E-123 | – | |
| Gene3D | 3 | 150 | 148 | 9.0E-47 | ||
| SUPERFAMILY | 4 | 217 | 214 | 6.02E-64 | ||
| ProSiteProfiles | 4 | 164 | 161 | 16.585 | ||
| Pfam | 6 | 139 | 134 | 4.1E-26 | ||
| CDD | 6 | 217 | 212 | 2.46877E-118 | – | |
| Gene3D | 151 | 218 | 68 | 6.9E-30 | – | |
| Pfam | 161 | 200 | 40 | 6.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Antioxidant activity | Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. | ||
| Molecular function | Peroxiredoxin activity | Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0020000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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