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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0022100 |
Transcript ID | LotjaGi4g1v0022100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ataxin-10; TAIR: AT4G00231.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q55EI6|ATX10_DICDI Ataxin-10 homolog; TrEMBL-Plants: tr|A0A151T9S5|A0A151T9S5_CAJCA Ataxin-10; Found in the gene: LotjaGi4g1v0022100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2709801..2712102) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCCCACGAAAAAACAAAACTATATATAGAAGTAAGGGAGAATGAAACCCTAACCTAATTTTATCGATAAAAATCCAA TTTTTGTTTCGATTCTGCTTCCAATTTCAATGGCGAGTTCAGAAGAAGCCCTTGAATCACTGTTCCGTGCTTCTAACTCC TCCAATTTGGAAGACTCTTTAGAGATTCTCATTCGCAATTCCAAATCCGATGCTGGGCGTTTCGACCTTGTTCTCCCTGC AGTGCTGAGTATAATTCGTTCACTCAATAATCATGATGATGATGTTCTCTCTTTATGTTTCAAGCTCCTCAGAAACTTGT GTGCTGGGGAAATTGCGAACCAGAACTCGTTCCTTGACCATGGTGGGGTGGTTGTTGTTTCTGGAATTTTGAGGTCACAT GCTGATTCTGCAGACCCCCCTAACCATGGCTTGGTTTGCTTGGGTCTGCATGTTCTGGCCAATGTTTCCTTGGCTGGGAA CCACCATCAACGTGCTATTTGGGAAGAGCTTTATCCCTCTGGGTTTTTGTCTCTTGCCACCAAGGAGACTTGTAATCCAT TGTGTATGCTAATTTATACTTGTTGTCATGGAAGTGCTGATTTCTTCAGAGACCTTTGCAGTGATGATGGCGGCCATGTA ATGGCACAAATCCTCAGAAGTGCTTCTTCTGGTCAGTTCATATATTACTACTTTTACTTGTGTGCTTTATTATAACCAAT TATCCTGCTTAACTGCTTTTATATTATATATTTCTAACACAATTGCCCAATTATCCCAAAAGTTTAGTCCTTTGAGTCAA GGGATAGATAGATAGTTTTAGTTTTGGGATGTCCCTCCTATTCCTTTTCCTGTCTTTGTTTAAATGGCTTTCTTAAATTT AGGTTTTCAGATCATGCTATAACTTGATCTTGTGAGTAGTATATAATTTTGTTTTCTATGCTGCTGTCAGTTTCATACCT GTTATGATCTTTTTATAACTTTTTTTTTGTTTCTTGCACTTAGCCTGTGTTGATGAGGATTGGATAAAGTTGCTTCTTTC AAGAATCTGCTTTGAAGAATCTCAGTTTCCTGTCTTGTTTTCTAAGCTACTTCCTATCGGTCAAGATACCCAGTTAAATG ATTATGAGTTTTCATCTGAACAAGCATTTCTTTTGCAAATTCTATCTGGAATTTTGAATGACCGTACCAGAGACGTTGCT GTTTCAGAGGATGTTGCATTGTTTCTTTTTGGAATATTTAACAAGTCTATTGGGGTTCTTGAGCATGCCGGGAGAGGCAC GTCTACTCTTCCTACTGGCTCTGCAGCTGTTGATGTTCTTGGCTACACTCTTACTATACTGAGGGACATTTGTGCTCAAT GTAGTGGGGGGCGTAATAAGGAGGATCACAAAGACGTTGTTGATGCGCTATTATCTTCCGGCCTCATAGACTTTCTTTTG TCTTTGCTTCGGGATCTTGAACCTCCAGCAATAATCATAGAAGGAATCAAGAAATTTGAGAACCAAGAAGGTGCTCTTCA TTCCTCAAAACCATGCCCTTACAAGGGCTTTAGGCGAGACATAGTTGCACTCATTGCCAATTGTGTGTATGGAAGGAAGC ATGCACAAGATGAAATCCGGCATAGGAATGGAATTCTGCTACTCATGCAGCAGTGTGTTACTGACGTAGATAATCCTTCC CTCAGAGAATGGGGGATATGGTCTGTGAGGAATATGTTGGAGGGCAATGAGGAGAATCGAAACTTTGTTGCTGAACTGGA AGTAGAGTTGGATGGCGATGCTGAAATTTCTGCACTTGGTCTATGGGTCTAAGTTGAATAGAGAACTAGACGTGCAAAGC ATGGAAAAGATTACTATGAGCTTGTTACATTTTCTTCTGAGTTTGGTGAATTGACTGTATCTGCACATCTTAACTAGTCT TTTCTAGTATGGTGTCTTTATCTGGGTTGGTTTTTTGTTTAGATTCTTTTTTTTCCCCATCTTTTCTTTTCAAATTGAAG ATGCAGTTTCTAATATAAACATAATTTGCTGAGATCCAATATAAGTTTGCTTGATTATTATAAAATCATGTATATTATTT GTTTCTACTAGATAATCAAGAAAAAATAATTCTTTCACAAACATTACATGCCACAATTGTTCCTATTTCGTTGGAGGACA ACCACGTTGCGGGTATGTTGGCTCATCAAGCGGCTCGAGATGGTTTGCAACATTGGGTTTGGCATCAACCTCCATCTAGT TTGATTGCGTCTCTGTAACATGACGTGATAACATAGTGGCTTTCTTTATTTTCTCTTTCTTC
CDS sequence (LotjaGi4g1v0022100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTTCAGAAGAAGCCCTTGAATCACTGTTCCGTGCTTCTAACTCCTCCAATTTGGAAGACTCTTTAGAGATTCT CATTCGCAATTCCAAATCCGATGCTGGGCGTTTCGACCTTGTTCTCCCTGCAGTGCTGAGTATAATTCGTTCACTCAATA ATCATGATGATGATGTTCTCTCTTTATGTTTCAAGCTCCTCAGAAACTTGTGTGCTGGGGAAATTGCGAACCAGAACTCG TTCCTTGACCATGGTGGGGTGGTTGTTGTTTCTGGAATTTTGAGGTCACATGCTGATTCTGCAGACCCCCCTAACCATGG CTTGGTTTGCTTGGGTCTGCATGTTCTGGCCAATGTTTCCTTGGCTGGGAACCACCATCAACGTGCTATTTGGGAAGAGC TTTATCCCTCTGGGTTTTTGTCTCTTGCCACCAAGGAGACTTGTAATCCATTGTGTATGCTAATTTATACTTGTTGTCAT GGAAGTGCTGATTTCTTCAGAGACCTTTGCAGTGATGATGGCGGCCATGTAATGGCACAAATCCTCAGAAGTGCTTCTTC TGCCTGTGTTGATGAGGATTGGATAAAGTTGCTTCTTTCAAGAATCTGCTTTGAAGAATCTCAGTTTCCTGTCTTGTTTT CTAAGCTACTTCCTATCGGTCAAGATACCCAGTTAAATGATTATGAGTTTTCATCTGAACAAGCATTTCTTTTGCAAATT CTATCTGGAATTTTGAATGACCGTACCAGAGACGTTGCTGTTTCAGAGGATGTTGCATTGTTTCTTTTTGGAATATTTAA CAAGTCTATTGGGGTTCTTGAGCATGCCGGGAGAGGCACGTCTACTCTTCCTACTGGCTCTGCAGCTGTTGATGTTCTTG GCTACACTCTTACTATACTGAGGGACATTTGTGCTCAATGTAGTGGGGGGCGTAATAAGGAGGATCACAAAGACGTTGTT GATGCGCTATTATCTTCCGGCCTCATAGACTTTCTTTTGTCTTTGCTTCGGGATCTTGAACCTCCAGCAATAATCATAGA AGGAATCAAGAAATTTGAGAACCAAGAAGGTGCTCTTCATTCCTCAAAACCATGCCCTTACAAGGGCTTTAGGCGAGACA TAGTTGCACTCATTGCCAATTGTGTGTATGGAAGGAAGCATGCACAAGATGAAATCCGGCATAGGAATGGAATTCTGCTA CTCATGCAGCAGTGTGTTACTGACGTAGATAATCCTTCCCTCAGAGAATGGGGGATATGGTCTGTGAGGAATATGTTGGA GGGCAATGAGGAGAATCGAAACTTTGTTGCTGAACTGGAAGTAGAGTTGGATGGCGATGCTGAAATTTCTGCACTTGGTC TATGGGTCTAA
Protein sequence (LotjaGi4g1v0022100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSEEALESLFRASNSSNLEDSLEILIRNSKSDAGRFDLVLPAVLSIIRSLNNHDDDVLSLCFKLLRNLCAGEIANQNS FLDHGGVVVVSGILRSHADSADPPNHGLVCLGLHVLANVSLAGNHHQRAIWEELYPSGFLSLATKETCNPLCMLIYTCCH GSADFFRDLCSDDGGHVMAQILRSASSACVDEDWIKLLLSRICFEESQFPVLFSKLLPIGQDTQLNDYEFSSEQAFLLQI LSGILNDRTRDVAVSEDVALFLFGIFNKSIGVLEHAGRGTSTLPTGSAAVDVLGYTLTILRDICAQCSGGRNKEDHKDVV DALLSSGLIDFLLSLLRDLEPPAIIIEGIKKFENQEGALHSSKPCPYKGFRRDIVALIANCVYGRKHAQDEIRHRNGILL LMQQCVTDVDNPSLREWGIWSVRNMLEGNEENRNFVAELEVELDGDAEISALGLWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 454 | 453 | 3.0E-111 | – | |
Gene3D | 2 | 218 | 217 | 2.0E-9 | ||
SUPERFAMILY | 22 | 439 | 418 | 1.08E-13 | ||
Gene3D | 223 | 444 | 222 | 2.9E-9 | ||
Pfam | 370 | 442 | 73 | 2.5E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0022100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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