Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0022700 |
| Transcript ID | LotjaGi4g1v0022700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein (DUF616); TAIR: AT5G46220.1 transmembrane protein (DUF616); Swiss-Prot: sp|Q8IE95|SETVS_PLAF7 Variant-silencing SET domain-containing protein; TrEMBL-Plants: tr|I1K341|I1K341_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2843200..2846976) extracted from Lotus japonicus Gifu genome v1.2.
GAAGATCATCATGTCACTTCTCTATCCTTGTTCCATGGATAAAGTGAAATGCAAATCAAATCTAAGGAACAGAAATCAAA GCTAAGCATTACTATATGGGGAAGCTAATAACAATCTCAAAACCTCTCATTATCCAATCAAAGCTCCTCTGTTTTTCCCT GTTCTACCTCTTCACATCTCTGTTCCTTGCTCTTTACACTATTTCCTTCCAATCCAAATGCCTCTTCAGATCATCCCCAT TTGATCCCATTCAAACCTCTCTCATCAGTTATCCTTCTTCCTATGGAGAGCACAAGTATGCTGTCTCAACCACACGCTCT TCCTGCTCTTCCCCTGTTTTATTTTCAGGTATTGGCCAGAAAAAAGTTGTTGAATTTTCTTCGCCTTTGGATAAATATCG TATCTTTTGGCTAATGGGTGTTGGTTTTTGTGTTTAGATTACCGGGATGTTTTGAAAGAGATAAAGAATTTCCGCAAGAG CTCTACATCTTCCACAAAGATGTTGGGGTATATGCACGGGAATGCTGATAGTTTTGGTGGGAATCTCAGCACCCACTTGA GATTTTCTTATTTTGATCATCAAAATGATAGCACAGAAGTTCCATGTGGGTTTTTTAAAAAATTTCCAATTAGTGATTCA GGTTTGTTCTGCTTCTTCTTTATGTGTGCATGAATGAGAGAGGGTGTGTGAATGATTGTGTAAATATTTGATCGAACAAT GCCGGTCAAATCACCTGTGAAGGTGTTGATTGAGGAGGAAGCGGTGAAGCCTTGTTGTGGAGAGCTTTGCTTGGCGGGAG TGACGAGGAGGGGTTGGAGTTCCGAGCACCGTGTCTGAGCCCGAGAGGGTCCCTAAGAAGGCACTCTGATGCCTAAGTAA GTGGCTGAGCCATTTAGGGAAATCTCTAAGTTACGAAGATTAGACAATGTACCTAACTCCTCTTATAAGAGAGCTTTATA TGCAATGTTCGTAGGCCGAAGTAGCCCAGGGGTATCATGAGTGCCTATAATTTGGGTGCACCTACTCAATAACCTTAACC ACCAGCTGTCCGCAATGATCAAACGACGAACGGTTTTTTGTTAGTGAGGACTAGACCTTGAGCCTCACACCTACTCCCCT ACCGCTAGGTCATAGAGTCTGTGATTAGATGGGGATCTTACCCTTGCGGGTGACCGGTTAGTATGGTCAAGTCAAGCCCG AGCTTAGTTGGTAGAAGATAATCGACTTTATGTATGATCGGGAGGGGACGCAGCTCAGTCGACCATGGGAGCGATGGGCT ATGGAGCCTCCCGGAATAGAGTAGCCTTTCGAATTACCTATTTTGTTGGTTATATGTTCCCACTGAAAGTAATGGATATT GAAAAACCGTGTTTCCAGAATTACTGATATTATGAAGATCAAAAATATTATTTGATGGCTGAGTGAATAGACATTTTGTC CCTTGAAAGATATGCGGTTGATGAACTCAATCTCCGAAAAGATGAAAAAATAGGTAAAATAGTTTGTGAAAGATAAAATG CAATCCATTTGGTTATTGAAAAATAAAATTTTTAATGTAAATTTTAAAACATGAAAAAAATGATTCGTTTTAGTTCCCGC AACACTAAATTAAAATTCAGTTTCATCGTGCAGAGACTATTTTAACAATTTTCTTAGTAGGAGATGATAGTGGCCGAACC TATATTGTTAAAGACTAAAATGACTATTCACTCTTCCGAATAAGATCAATCGTAATATTTTTCCTGTTCTTTTATATTTG ATTTGTATCTTTTATTGCTGGATGCAGATCGAATTGCCATGGAAAAGTGTAAAAATGTAGTTGTTGTTTCAGCAATCTTC AATGACCATGATAAAATCCGGCAACCGAAGGGCCTTGGATCCAAAACATTAGAAAATGTGTGTTTCTTCATATTCATAGA TGATATTACACTCAAACGGCTTGAGCATCATGATTTGATTTCCAGAAAATCAAGTGAATACAAGATTGGTGTATGGAGGG TTGTGAAGGTCTCAAAGGAGTATTTGTATCTGAACCCAGCAATGAATGGGGTTATACCAAAATATTTAGTTCATAGACTT TTCCCAAATTCCCAATTCAGTATTTGGATAGATGCAAAGTTGAAGCTAATGGTTGATCCATTGCTATTGATTCATTCATT AGTTATATCAGAGAATGCAGATATGGCTATATCAAAACACCCATTTTATGTTCATACCATGGAAGAAGCAATGGCAACTG CAAGGTGGAAGAAATGGTGGGATATCAATGCCTTGAAGATGCAAATGGAGACATACTGTGAAAATGGATTGCAACCATGG AATCCTAGCAAGTTGCCTTATGTCTCAGGTAACCAAGCAACACGAATCATTATCCTCTCATGTAAAAATTTCACATGACA CGGTGAAATTTTGTATTTATCTATATCTTTACATGTGTTAAACATGTAGAATCCTCTTAATATTTATAAAGATATAGATT GACACGGTTTCACTTTATAATCTCATGTGACATGAAATAATTGTTATTCATAAATTGAGTGCTTATATTTAAGGCTATGC TTGGATTGATTAAACATAACAAAACGTACAAAATGAAATATAATGGAACTAGTGGAATAGGACGGAGCGGAATAAAAATC ACTTTATATTGTTTGGATATTCTATTATGGAACAAAACATATTTGTCCACCTATTGTTTAGATAATGGATGGAATTGAAT GAATTATATTTTTTTTATCCATATATTACCTTTATTTTAAAAACACTAGTATTAAATATATAATATATATAGGGATTGAA AAATAATTTTATAAATTTAGTATTATGAGTGTTTAGTTCCACCCCTTTCTATCCAAAGTATGGGCTGTAGGACAGCTCAA GTGGTAGGAGGCTCGGAGCAGGGTGACATATGGGTTGACTAGGGGAGGTCCAAGGATCGATTCTTGGCGGGTGCAATTTA TCTTTTCGATGTACCAAAAAAAATATGGGTGCACAAAAATTGATGGGAGTAATGGAATGTAATGGAAAGATTTCATCACC TTTCAATTCTTTCAATCTCTCATCAATCCTTCCATTCTGTCCTATTACACTCTCTCATCAATCCAACCATAACATAAGAA TGTAATTATGTTAATTTTCAGGTAGGTTTACTGATCCAACCCAAACTTACAATGTTAACTTCAGAAAAGCTTTTATACCA TATGATATATAATTGACTTTCTTTTATAGATGTTTATTGAGGATATATGATTTGCAGATGTGCCAGACAGTGCTCTGATC CTAAGGAAACATGGACTGGGTAGTAATCTCTTCTCATGTCTTGTATTCAATGAGTTGGAGGCTTTTAACCCAAGAGACCA ATTGGCCTTTGCATTTGTCAGAGACAACATGAACCCCAAACTGAAGCTGAACATGTTTGAGGTTGAAGTTTTTGAACAAG TAACAATGGAATTCAGACACAATCTCGGGCTAAGTAATGGGTCCACTGCTAAGAAATTGTCAAGGACAGGAAAAACTAAA AGGGCAGAACCAAATTTGATGTATGTAAATGGTAGCTGTTGCAGCAAGTGCCAACAATATCTTTCCATGATGTGGGGTGA ATCTCATTAATGTTGCCCCAGAAGTAAAGAAATGATAATAACCATCTCAAAAGGGAGGCCATAAAACAATCAAAGATAAA ATTGGAACATCTAGGTTGGATTTGTTTTTAAGACAAAAAAAAACTCAAGGACACTAGCAATTAAAAATGTGGAATCAATC ATCATTTTGATCTAAAG
CDS sequence (LotjaGi4g1v0022700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGCTAATAACAATCTCAAAACCTCTCATTATCCAATCAAAGCTCCTCTGTTTTTCCCTGTTCTACCTCTTCAC ATCTCTGTTCCTTGCTCTTTACACTATTTCCTTCCAATCCAAATGCCTCTTCAGATCATCCCCATTTGATCCCATTCAAA CCTCTCTCATCAGTTATCCTTCTTCCTATGGAGAGCACAAGTATGCTGTCTCAACCACACGCTCTTCCTGCTCTTCCCCT GTTTTATTTTCAGATTACCGGGATGTTTTGAAAGAGATAAAGAATTTCCGCAAGAGCTCTACATCTTCCACAAAGATGTT GGGGTATATGCACGGGAATGCTGATAGTTTTGGTGGGAATCTCAGCACCCACTTGAGATTTTCTTATTTTGATCATCAAA ATGATAGCACAGAAGTTCCATGTGGGTTTTTTAAAAAATTTCCAATTAGTGATTCAGATCGAATTGCCATGGAAAAGTGT AAAAATGTAGTTGTTGTTTCAGCAATCTTCAATGACCATGATAAAATCCGGCAACCGAAGGGCCTTGGATCCAAAACATT AGAAAATGTGTGTTTCTTCATATTCATAGATGATATTACACTCAAACGGCTTGAGCATCATGATTTGATTTCCAGAAAAT CAAGTGAATACAAGATTGGTGTATGGAGGGTTGTGAAGGTCTCAAAGGAGTATTTGTATCTGAACCCAGCAATGAATGGG GTTATACCAAAATATTTAGTTCATAGACTTTTCCCAAATTCCCAATTCAGTATTTGGATAGATGCAAAGTTGAAGCTAAT GGTTGATCCATTGCTATTGATTCATTCATTAGTTATATCAGAGAATGCAGATATGGCTATATCAAAACACCCATTTTATG TTCATACCATGGAAGAAGCAATGGCAACTGCAAGGTGGAAGAAATGGTGGGATATCAATGCCTTGAAGATGCAAATGGAG ACATACTGTGAAAATGGATTGCAACCATGGAATCCTAGCAAGTTGCCTTATGTCTCAGATGTGCCAGACAGTGCTCTGAT CCTAAGGAAACATGGACTGGGTAGTAATCTCTTCTCATGTCTTGTATTCAATGAGTTGGAGGCTTTTAACCCAAGAGACC AATTGGCCTTTGCATTTGTCAGAGACAACATGAACCCCAAACTGAAGCTGAACATGTTTGAGGTTGAAGTTTTTGAACAA GTAACAATGGAATTCAGACACAATCTCGGGCTAAGTAATGGGTCCACTGCTAAGAAATTGTCAAGGACAGGAAAAACTAA AAGGGCAGAACCAAATTTGATGTATGTAAATGGTAGCTGTTGCAGCAAGTGCCAACAATATCTTTCCATGATGTGGGGTG AATCTCATTAA
Protein sequence (LotjaGi4g1v0022700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKLITISKPLIIQSKLLCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISYPSSYGEHKYAVSTTRSSCSSP VLFSDYRDVLKEIKNFRKSSTSSTKMLGYMHGNADSFGGNLSTHLRFSYFDHQNDSTEVPCGFFKKFPISDSDRIAMEKC KNVVVVSAIFNDHDKIRQPKGLGSKTLENVCFFIFIDDITLKRLEHHDLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNG VIPKYLVHRLFPNSQFSIWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFYVHTMEEAMATARWKKWWDINALKMQME TYCENGLQPWNPSKLPYVSDVPDSALILRKHGLGSNLFSCLVFNELEAFNPRDQLAFAFVRDNMNPKLKLNMFEVEVFEQ VTMEFRHNLGLSNGSTAKKLSRTGKTKRAEPNLMYVNGSCCSKCQQYLSMMWGESH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 456 | 456 | 2.6E-238 | – | |
| PANTHER | 1 | 456 | 456 | 2.6E-238 | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 17 | 36 | 20 | - | – | |
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 37 | 456 | 420 | - | – | |
| Pfam | 113 | 407 | 295 | 5.1E-113 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0022700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…