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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025500 |
| Transcript ID | LotjaGi4g1v0025500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G18170.1 WRKY DNA-binding protein 28; Swiss-Prot: sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28; TrEMBL-Plants: tr|A0A1J7HK30|A0A1J7HK30_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0025500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3136661..3139150) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTCCCTCCTCTAGATTTTTTTCTTATTTTTTTATATATATAAACACACAACACACATAAATAAGTTCAAGAGATA AGACTCCAAAGTCTCACACAACCTCATCATAGTCTTTTTCTTCAGCTTCCTCTCCTTTTATTCTTCATGTCTGATGAACA CCAGGACCTTGTCCCAGGAGGAGGATCTAACATGTACAGTGAATTAAAGCATCACATTTCTAATTCCTTTCCTTCAGCAT ATCATCATGATTCATCATCACAAGCCTTTGATGATCCACCTAATTACATGAGTTTCACTGAGTGTTTGCAAGGAAGAGTC ATGGACTACAATTATTCACCATTCGGGAACACTTCTTTTGGCTTGTCTCCTTCCTCATCAGAAGCTTTTTCATCTGTTGA TCAAGGAAATCAGAAGCCTCCAGAAGGAGATGTTGCAGGTGGTGGTGGTGGTGGTGAAACCCTTGCAACTACTACCCTTA ACTCATCTATCTCTGCTTCCTCATCCTCTGATGCTGGAGCTGAAGAAGATTCAGGAAAGAAAAAGAAAGATAATAACCAG GTCAAAGAAGAAGGAAATAACTCTGGGTAAGTGTTTGTTTCTTTCCCCTCTCTCTTCTTAAATTAATTAAGGTTGACTCG AAGGCAAGATCTATTTTCTAGGCTTATATTAATGGTGCAACTCTTGCAATTTGTTATGGATGAATCATTACAGGAACAAG GATAAAAAGAAAGGAGAGAAGAAGCAGAAGGAGCCAAGGTTTGCCTTCATGACTAAGAGCGAGGTTGATCACCTTGAAGA TGGATACAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAATAGTCCATACCCTAGGTAAAACACTTCTCTCTCTCTCA ATCTCTTTTTCTATATCTCTTTCTCTCTCTCTCTCTCTTTCTTCTTTGCACCCATAGAAAGATCCAGCACTTTAAGGTTC AAACCTTCAACAATATGAATTAGAACACACCCAACTATCTGCAATTGCTTCCACAAACTTTCTTATAGAGTATTTGGATC AACTTATCTTACATCAGAATTAATTCAGAAACTCAGAAGTTATAATCACAGAAACTTCCATAGCTTAATTTGATGAAACA AATATCTGCATCTATTAGTTATTACACCTTAAGTTCCCAACAGAAACATCACTCCACCTGATTGAATCCTATTAATAAAA AACAAAACAAAATACCAAATGGAAAAATTAAACCAGGTTTTCAAATCCACCACTACTCTACTCTATATACCCTATTATGA TTTGCTTACAACTTATAGTATGTTTATTTCACATTTTAATTTCTTTCATATGATCAAACCCGGCTAAAAGCTACTCAGAA AAACTTCTTGTCAGAATTGATTCTTTTTTTCATTGATTTTATAATACCCAAATGTGAACAAGTGGGAAATGGAATTTGAT GACTGAATACTAATGTTATGTCATATGTGTGATTGATTCCAGGAGCTACTACAGGTGCACTACACAGAAATGCACAGTGA AGAAACGCGTAGAGAGGTCATATCAAGACCCAACAACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCC ACATCGCTAAGAGGGAATGCGGCTGGAATGTTCACACACCACTACTCTTTGCTAACCACACCACCCACTCCTCCACTCAG TCTCACAGCCGGGTCAAACTTCCCTCAAGATCTCTTTCTGCACCACCACATGCAGAACCAAACCCTCATCTTCAACAATA ACAACAACAACAACAATGCTCCATCATCAACAAACTCCTCCATGTATTCACACTATAATAACAACTCTCTTCTTCAACAT CAGCATCAGCATCAGCTTCCTCCTGATCAATATGGGCTCCTTCAAGACATTGTCCCTTCAATGTTCCTTAAACAAGAGCC ATGAGAAGTGAGAACTTTACTTAATCAATGTACTCTCTCTTTTTCTCACACCCCCCTCCCCCTATATATGTAGATCTTTA ATTGGGCTTTGTTTATGATCATTTTTGTACATATAGTTTGATTTGATTAAGTTATATGTATTTCTGACTCATCAAAGCCT AGCTAGCCTTTGTTTCAAAGTGAGTGAGTTAATCATGAGGGTACCTACTTAATTAGGCAGAGATTATTAGAAAGAATATA TATCTCTATTTATATGCATTTCAATCATGTGCATGCAGCCCATTTGGGATTTCCATGCTATATATGAATGTGTAACTTTA TTAATTAGATTGAAATATTTTTACTTGATGGATTAGAGCTATTTCTTGGTACTCCATTTTTCTTTCTTTTAAATGTTTCT TGGTCAAGCTATATATACAAGAACTTGTAGGTATGTTGAGCTAATGGGTTTAACTGATCAAACACATACATGCAAGGATT CATGAGCAAGCTTGAGGCAAGTTTGTATGCAAGGATTCAGTACGCATACAATTAAGAGGATTTAATTATATTAAAATGTT TTGTGTATAG
CDS sequence (LotjaGi4g1v0025500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGATGAACACCAGGACCTTGTCCCAGGAGGAGGATCTAACATGTACAGTGAATTAAAGCATCACATTTCTAATTC CTTTCCTTCAGCATATCATCATGATTCATCATCACAAGCCTTTGATGATCCACCTAATTACATGAGTTTCACTGAGTGTT TGCAAGGAAGAGTCATGGACTACAATTATTCACCATTCGGGAACACTTCTTTTGGCTTGTCTCCTTCCTCATCAGAAGCT TTTTCATCTGTTGATCAAGGAAATCAGAAGCCTCCAGAAGGAGATGTTGCAGGTGGTGGTGGTGGTGGTGAAACCCTTGC AACTACTACCCTTAACTCATCTATCTCTGCTTCCTCATCCTCTGATGCTGGAGCTGAAGAAGATTCAGGAAAGAAAAAGA AAGATAATAACCAGGTCAAAGAAGAAGGAAATAACTCTGGGAACAAGGATAAAAAGAAAGGAGAGAAGAAGCAGAAGGAG CCAAGGTTTGCCTTCATGACTAAGAGCGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAGGC TGTTAAGAATAGTCCATACCCTAGGAGCTACTACAGGTGCACTACACAGAAATGCACAGTGAAGAAACGCGTAGAGAGGT CATATCAAGACCCAACAACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACATCGCTAAGAGGGAAT GCGGCTGGAATGTTCACACACCACTACTCTTTGCTAACCACACCACCCACTCCTCCACTCAGTCTCACAGCCGGGTCAAA CTTCCCTCAAGATCTCTTTCTGCACCACCACATGCAGAACCAAACCCTCATCTTCAACAATAACAACAACAACAACAATG CTCCATCATCAACAAACTCCTCCATGTATTCACACTATAATAACAACTCTCTTCTTCAACATCAGCATCAGCATCAGCTT CCTCCTGATCAATATGGGCTCCTTCAAGACATTGTCCCTTCAATGTTCCTTAAACAAGAGCCATGA
Protein sequence (LotjaGi4g1v0025500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDEHQDLVPGGGSNMYSELKHHISNSFPSAYHHDSSSQAFDDPPNYMSFTECLQGRVMDYNYSPFGNTSFGLSPSSSEA FSSVDQGNQKPPEGDVAGGGGGGETLATTTLNSSISASSSSDAGAEEDSGKKKKDNNQVKEEGNNSGNKDKKKGEKKQKE PRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYQDPTTVITTYEGQHNHPVPTSLRGN AAGMFTHHYSLLTTPPTPPLSLTAGSNFPQDLFLHHHMQNQTLIFNNNNNNNNAPSSTNSSMYSHYNNNSLLQHQHQHQL PPDQYGLLQDIVPSMFLKQEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 312 | 286 | 3.0E-119 | – | |
| PANTHER | 27 | 312 | 286 | 3.0E-119 | – | |
| MobiDBLite | 74 | 164 | 91 | - | – | |
| MobiDBLite | 74 | 89 | 16 | - | – | |
| MobiDBLite | 105 | 124 | 20 | - | – | |
| MobiDBLite | 125 | 164 | 40 | - | – | |
| Gene3D | 154 | 235 | 82 | 3.8E-33 | ||
| SUPERFAMILY | 166 | 234 | 69 | 2.35E-29 | ||
| ProSiteProfiles | 169 | 234 | 66 | 33.029 | ||
| SMART | 174 | 233 | 60 | 5.9E-38 | ||
| Pfam | 175 | 232 | 58 | 1.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0025500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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