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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025700 |
| Transcript ID | LotjaGi4g1v0025700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-binding; TAIR: AT1G29850.1 double-stranded DNA-binding family protein; Swiss-Prot: sp|O14737|PDCD5_HUMAN Programmed cell death protein 5; TrEMBL-Plants: tr|I3S3B2|I3S3B2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0025700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3167482..3171737) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACACCTCTCTCCATTTTGATCCATAAACAAACAAACAAACAAACAAACAAACAACCGCGTAACGCAAACGCGACCT GCTTGTGCTGCTGCTACACAATTCAGGATCAGCGAAAACCCGCTAGGGTTTCTTCCTTCTGCTAATCTACCCAAAATGGT ACCTTCTCATCCCAATTCCCTCTTACTTCCTTCCATTTCCTCGATTATTCAATGTCTTTGTGAACTCAAAACCTTTTTCA ATCTCGCACAATGCCTCAATAGTTTTTTTTAATAATTTTTTTGATAATTTTTGCTTAGTTTTCTGGTTTATATGATAAAC TGTTAATTTCAGGCTGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGATGCAGGAGCTCATGGGTCGCCAGGGCGCGGT AAGCGAGCTTTTCCATGTCTTTATGTTTATTTATTTTTTGCCGCGGAGACTGAGAGAGTTTGATTGCAATTGTGTGTTTG TATTTCAGGGAAGTCAGCAGGACCCTGAACAGAAGGCGGCTCAGGAGGATGCGAAAAGGCGAGTTTAGTTTATGTGTATA CTGTATATATGTGTGTTTGTCTTAATTGGGTAGATTTAGATGAGCTGTTATTGATTTGAGTGAATGGAAATATGTTTGAT TTAGGGAGGCTGATGAACGGAGGCAAATGATGCTTAGTCAGATATTGTCTGCTCAAGCGCGAGAGAGAAGTAAGTTTGTT GCATGATCTTTCCTTCTTAGTTGTTATTTGGCTTTTTAACTACTATAGCATTCTTGTTTTTCCTTTAAAATTTAGTCTGA TTAATGAATATTCTGCTGAACTATATTCATAATGGTTGGATGTGTGTTGTGAACATGCTCAAAAGAAAGTTATCTAAGAA GTTCTATCTTGCAGCTTATGAATTACTGTGATTTTGGGGTCTAAACATTGGTTGCATATCTGCAACCAAACATGCACACT GTTGGCAGAAGATAGAAGTGAAGCTTTTATCATTTGCAATTTGCATAATTTAATATTTCAATCCTGCCTTCAGTCAGCCA TCAATGGATATAGAAAGTATAGATACATGTGGGGTCATAGTTAGTAATATGTACTGTAGGTGGGTAGTTTTCTTAAACTT CCATATAACATATTCCTATAATAATAGTAACAAACACAAAGTATATACATAGTAGTAGTTGCACAATCATAAACGTACAT TAAATGTGAGAATGTACAGGATATTACTAACTAGTCTTACACACATTTCAAATATATGCCTAAAGTTTTTCTGTAGAACA TGCATCAAATTTAACTCTATTAATAGAAGATATTAGTACATTCGGTTATTATGTAGTTATTGTGTCTAAATAGCTGAGTT TCTATCCAAGGTACATGTGAAGTGTGTCGTGGAAAAGTTAATATTGAATTTCTAACTCAATTGGTGGATTTTGACCCAAA ATCGGCAAAGAAAATTGACAACTTTTATGAGATACGAAGCTTGATAAATTACAATTTATTGTATCTCCTCTCTCCCTTTA CCCTCTGTTCTCTGTTTGTCCCTGTGTGCACACTCAGGTGTTCTAAGCAGGTACACTCTTAAGTCTAAGCATGTCATAGG ATGATAGGAGTCGCTGGTTAATTTCTTCACTGTACATTATTCATTTGTTTTAAGTGTCTGCAGTCTGGGACTCTGGGTAT TATGGAGAGGTATTTTTAGTAAATCCTTATAATTTGAACTTTTTTGGTAATTAGTATTGCTTGGCTGAGTTGTCTACCAG CTTTAACTATTTATGGATATTCATTAAAAAAAACTAAAGGATTTGGAGAGTTAGACTATTTGAAGAACATGTTTTCTTCA ACTCATGTTCCTCCATGTCGCTGTAGTTCCTCTTTGCTTTCTGTTCGAAGATGGATTTTTCTGGGCTGATATTTTTTTCC TAACTACTAATCTGAGACATGTCTGGTTGTTTAAGCTAAAACAAAGAGAATATCCGGGATGGATTTGGGAGGTTAAGTCA TGCATTTTAAATGTACTCAACATAGCAATGGTGAAAATTTAGGCGATCTATTTTAGCTCACAAACCTATATAACTGGGTA AGAAGATCTGGGTATAGTTGTCTTAGTTGTAGTAGTCATGAAGATAAATCATATTTGTACAGCAAAATCTGAAATTGCTT TATACATTGAAAGAACTTGTTTGCCAAATGCCAATTCACCTCTGAATTATCCAATCAAAATTTTGAATGCACGAGGCAAT TGTCTTTTTACATTCTTATAAATTTCTGACATCGTCATATGCAGTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCCA GAGGTGTTGAAGATGTTATATTAAGAGCTGCTCAAATGGGTCAGATAACAGAGAAGGTATATTGGATTTTTTTTTCTGCA ACGTTTCTCATTCTTATCTCAAGCTGTTAGGCTTTTCATTTTAAACATGAACTTTTATGGGTAGTATATTGCCATCTGAT CAGTACTGGTTCTAGTTGTAATCATTGATCCATCATGTCTTCACGTGACATGTTAAGTAGGACTTCAACAGTTGGAATAG TATAATGTCGATATTTAATATTAAAGCTTTAGTGTTCTCATAATTCATACAACTTCTCTGTAAAACTTTACGATTTAGAT TACTTTGACATTCAATGGAAGGTTCTCAATCCTAAGTCATACTTGGAATTGTTAAGGGAGGTAGACACTTGAAATTGTAA CATGGAGTATAAGATCTTACCTGTATTTATATGTAAAAATAAAGAATCAATTCAACATTGTTGTTGATATATTATGTTAT AGGATTATGCTTTAGAAATTATAATCAAATTATGCTATAAAAATCCTGGTACATATTTTTCCCTTCTCTATGTCAGCCAT TACCATTTAGTATCTTGAAAACGTAAGTCTGTGATGGGTGTTGTGTCCAACTCTAGAAGGCTTTTGATTGCCAACCCACT TATTGATGCCATCTGTTAAATCTTGTCTTTGCTTGGGAACTAGAAAACCATAAGAATTAAGAAGTTAATAAAGCCAATTT GTCTGAAGTCTGAACTGAAGTTGGTGTTGGGAGCTCTGAACCACCAATTAGATGGAGGCTTTGGTGGGAGTTCAAAGACA GAACCAGCATCATGCTTGAAGCACCAGTCTCTCAGATAAAGGAAATGACCTTCCCATTGCAGTGCATGTGAAAACAGTTA CAGAGTGTGCATAGTTTTTTTTGCCAATTGGAGGTCTAAGGTTTTGGCTGGATTAATTTTGGGAGGTTGTCTTCTGGGTT TGTTAGTGGATTTGTTCAGGTTTTTTAATTTAAGCATCTAGTGGGCTAGGAATGGAAAGACCTGAACCTACTACCTTTTC ATGCCCCGGCGCGATCCTAGCAGAATGAGTTTCCTGATTTGATCTTGATTGTTCTAGCCATATCAACAATCGACACCTAA AATCGCAATATTCTCTGCATTGAATTGCGATCACATATGTTTTTGGCATTAAGGTGCTGACTGATGAAGTCAAAACATCA GTGCATGCTGTCTCATGAGTGGTTGTGATTCGAGAATGACTTGTTCAGGCAGAGTTTAATCTGTTATTAAACTACATGCA AGGAAGTTGGTTTTTCCTTTCCAAAAAGTGAAAGAGAAATCACTAGATGAAATTTGTGCACGAAATACAGATATCATAGT TTTTCCCTTACAAAGCATTATTTTATCGGGGTATCTACTGTGCCTCATCTATTCAATGGCATCTTCAGGTTTCTGAGGAA AGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAGCAAGACAGACAAAAGTAACCGTAAGTTGTAGACTATTTGT TCATTGTTCTATTCTCATTTCTCAGTTTATAAGTTTGTCATTAATTTACTTTTTTTCAGATACAAAGGCGTCGAAATGTT CTCGAGGATGATGATTAACTTTGACACCATCTCTTTAAAATGAGTCTTCTGTGACTTCATGCTTTATCATGTCTCTTGAA GTATTTTATATGGGTTGTATATGTTAATTTTCAATTTTTGGTTGTCTTGCCAGGCCTCCAAATTAAACTAGAAAGATGTA TCAATTTTCTGGCGTATTCTTTTGTAAAACATATTCTAGCATGTGGATGACATCTCATAGATTACAAGCTTTCAATGTAT CCTGAAATATTTATGTTGCATGAATGCTGAGTCAATGAAAATTGGTACCGGGTCAATTTGATTGTTTGTGGTTGGTTTAA GGTGGTACATGTGGGA
CDS sequence (LotjaGi4g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGATGCAGGAGCTCATGGGTCGCCAGGGCGCGGGAAGTCAGCA GGACCCTGAACAGAAGGCGGCTCAGGAGGATGCGAAAAGGGAGGCTGATGAACGGAGGCAAATGATGCTTAGTCAGATAT TGTCTGCTCAAGCGCGAGAGAGAATTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCCAGAGGTGTTGAAGATGTTATA TTAAGAGCTGCTCAAATGGGTCAGATAACAGAGAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAA CCAAACAGCAAGACAGACAAAAGTAACCATACAAAGGCGTCGAAATGTTCTCGAGGATGATGATTAA
Protein sequence (LotjaGi4g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADPELEAIRQRRMQELMGRQGAGSQQDPEQKAAQEDAKREADERRQMMLSQILSAQARERIARIALVKPEKARGVEDVI LRAAQMGQITEKVSEERLISLLEQINNQTARQTKVTIQRRRNVLEDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 128 | 128 | 4.1E-37 | ||
| PANTHER | 1 | 128 | 128 | 1.7E-53 | ||
| Gene3D | 2 | 110 | 109 | 7.1E-34 | ||
| Pfam | 9 | 120 | 112 | 4.0E-30 | ||
| SUPERFAMILY | 9 | 117 | 109 | 1.83E-30 | ||
| MobiDBLite | 15 | 45 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0025700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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