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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0025900 |
Transcript ID | LotjaGi4g1v0025900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT1G29790.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22; TrEMBL-Plants: tr|A0A072UPV1|A0A072UPV1_MEDTR S-adenosyl-L-methionine-dependent methyltransferase; Found in the gene: LotjaGi4g1v0025900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3177650..3178771) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTCACATTCACCACCATGAGTCTAAACTTGGTCCTCCTAATGGCCATGGTGGCCACCAACATCCTCTCCCTCTA CCACCTCTCAACCACCCTCCAATCCCCTAAATCCACCAAACCACCACCATCAGCCCCCGTCCCAGACCAACTCCTCCGCC AGCTCCACACCATACGCGCCACCATCAACCAACTCACGCGCCTCCAACCAAATTCCAAAAAATCCACCATCCCACCAGAT CTACTCCTCTACTCTCACCTCTCCCCCATCGCCTCCTCCTGCCACAACCACCCTGACCTCCTCCACAAGTACATGACCTA CACCGCTTTCTCCCTCTGCCCCTCCGATTCCGACCTCGCCGAATCCCTCATCCTCCGCGGCTGCCACCCCCTCCCCCGCC GCCGATGCTTCTCCAGAACGCCGAAGAAGCAGCAAAACTCTCTCCCTCAGAACCCTTTCCCTTCTTCCTTACCAGATTCC GGAGTCATCTGGGATCACTACACCTGCAAATCCTTCGATTGCTTGAACCGTCGAAACCCTAACCTCGGCTTCGACACTTC CCGCGACGCGTCGAAGTTCACCTCCTACTCCGACGAGCTCGATCTACCGGTGCAGCAGCTTCTCCAGATCGCGAAGAGCG CCAAGTCGGTGCTGCGTCTCGGCCTCGACGTCGGCGGCGGGACGGGGTCCTTCGCCGCGGCAATGAGGCTCCGGAATGTG ACCGTGCTGACGACGACAATGAGCGTGGCGGCGCCGTACAGTGAGGCTGTTGCTCTGAGGGGGCTGGTGCCGCTTCACGT GCCGCTTCAGCAGCGGCTGCCGCTGTTTGACGGTGTGGTGGATGTTATCCGGTGCGGGCGCGCGGTGAACCGGTGGATTC CGGCGACGATGATGGAGTTCCTGCTGTTTGATCTGGACAGGGTGTTGAGGGGTGGAGGGTACTTGTGGCTGGACCATTTT TTCAGCAAAGGGGTGGACCTTGAAAAGGTGTATGCGCCGTTGATCGGGAAATTGGGGTACAAGAAGGTGAAGTGGGCGAC GGGGAACAAGACTGATGCTGGTGGTGTCAAGCATGGGGAGGTTTACTTGACTGTGTTGCTGCAGAAGCCTCTATCAAGAT GA
CDS sequence (LotjaGi4g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCACATTCACCACCATGAGTCTAAACTTGGTCCTCCTAATGGCCATGGTGGCCACCAACATCCTCTCCCTCTA CCACCTCTCAACCACCCTCCAATCCCCTAAATCCACCAAACCACCACCATCAGCCCCCGTCCCAGACCAACTCCTCCGCC AGCTCCACACCATACGCGCCACCATCAACCAACTCACGCGCCTCCAACCAAATTCCAAAAAATCCACCATCCCACCAGAT CTACTCCTCTACTCTCACCTCTCCCCCATCGCCTCCTCCTGCCACAACCACCCTGACCTCCTCCACAAGTACATGACCTA CACCGCTTTCTCCCTCTGCCCCTCCGATTCCGACCTCGCCGAATCCCTCATCCTCCGCGGCTGCCACCCCCTCCCCCGCC GCCGATGCTTCTCCAGAACGCCGAAGAAGCAGCAAAACTCTCTCCCTCAGAACCCTTTCCCTTCTTCCTTACCAGATTCC GGAGTCATCTGGGATCACTACACCTGCAAATCCTTCGATTGCTTGAACCGTCGAAACCCTAACCTCGGCTTCGACACTTC CCGCGACGCGTCGAAGTTCACCTCCTACTCCGACGAGCTCGATCTACCGGTGCAGCAGCTTCTCCAGATCGCGAAGAGCG CCAAGTCGGTGCTGCGTCTCGGCCTCGACGTCGGCGGCGGGACGGGGTCCTTCGCCGCGGCAATGAGGCTCCGGAATGTG ACCGTGCTGACGACGACAATGAGCGTGGCGGCGCCGTACAGTGAGGCTGTTGCTCTGAGGGGGCTGGTGCCGCTTCACGT GCCGCTTCAGCAGCGGCTGCCGCTGTTTGACGGTGTGGTGGATGTTATCCGGTGCGGGCGCGCGGTGAACCGGTGGATTC CGGCGACGATGATGGAGTTCCTGCTGTTTGATCTGGACAGGGTGTTGAGGGGTGGAGGGTACTTGTGGCTGGACCATTTT TTCAGCAAAGGGGTGGACCTTGAAAAGGTGTATGCGCCGTTGATCGGGAAATTGGGGTACAAGAAGGTGAAGTGGGCGAC GGGGAACAAGACTGATGCTGGTGGTGTCAAGCATGGGGAGGTTTACTTGACTGTGTTGCTGCAGAAGCCTCTATCAAGAT GA
Protein sequence (LotjaGi4g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFTFTTMSLNLVLLMAMVATNILSLYHLSTTLQSPKSTKPPPSAPVPDQLLRQLHTIRATINQLTRLQPNSKKSTIPPD LLLYSHLSPIASSCHNHPDLLHKYMTYTAFSLCPSDSDLAESLILRGCHPLPRRRCFSRTPKKQQNSLPQNPFPSSLPDS GVIWDHYTCKSFDCLNRRNPNLGFDTSRDASKFTSYSDELDLPVQQLLQIAKSAKSVLRLGLDVGGGTGSFAAAMRLRNV TVLTTTMSVAAPYSEAVALRGLVPLHVPLQQRLPLFDGVVDVIRCGRAVNRWIPATMMEFLLFDLDRVLRGGGYLWLDHF FSKGVDLEKVYAPLIGKLGYKKVKWATGNKTDAGGVKHGEVYLTVLLQKPLSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PANTHER | 6 | 372 | 367 | 5.5E-192 | – | |
PANTHER | 6 | 372 | 367 | 5.5E-192 | – | |
TMHMM | 7 | 29 | 23 | - | – | |
Phobius | 12 | 30 | 19 | - | – | |
Phobius | 31 | 373 | 343 | - | – | |
Gene3D | 189 | 339 | 151 | 8.6E-6 | – | |
SUPERFAMILY | 196 | 345 | 150 | 4.31E-10 | ||
Pfam | 204 | 316 | 113 | 5.9E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0025900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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