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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029000 |
| Transcript ID | LotjaGi4g1v0029000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G68150.1 WRKY DNA-binding protein 9; Swiss-Prot: sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9; TrEMBL-Plants: tr|A0A0B2S4P3|A0A0B2S4P3_GLYSO Putative WRKY transcription factor 9; Found in the gene: LotjaGi4g1v0029000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3586209..3592166) extracted from Lotus japonicus Gifu genome v1.2.
ATGTAGTGGTTAGATTTAATAAACCCTTAATTTGTTTGTTAATTACACAAAGGGAAACTAAAAGGGTCAATGGCCCATCA TTAACTTGACTGGCAGAATGGTGCTTTTTGTCTTTTTGGTCATGGGAGAGCTCACTTATCAAATACTACTAGGGTACCCA CTGTCCTATATTTTGTGAATTTTGAAGCTTATAGACTAATTAATTTAATTGGGGATATATTTAAGAAGCCAATCAAAGTC AAAACTTAGATGCGTCCATGTGTGTCCAAAATATATAAGAAATGTCTTTGGGATTATAGAGGATTGACTTTGGTGCCTCA AAAGCAGCATACTTGTATATCCTAAGAGAAGACAAAGGAAGAGATTCTTCATTCATTCTCTCAACCTTTTCCTAAAGAAC CCATAAAGATGGAGATTGATCTCTCTTTGAAGATAGAAAGTGATGATGAGCAAAATGAAGAAGAGGAGAAGGTGGGTGAG TTAGTGAAAGAGGATGACATGGAAGAAATGGTACATGAAGTCCCCACAGCTGGTGAAGTTGAAGAAGATGATGCATCAGT TGTAGAAATATCTTTGCAAGATAACACAAAAACAAGAGAGGTAATTTTTCCTATGATATTGCTTGTATTCTTTTTCATGA AACTCTTATTTTCTTTTTTCCTTTTTTCAGGTTTCTGCGTTTGCTTACTTATATATGCATGTGTAATAACTCTAATTAAC TCACATGTCTTTACAAAAAAATCTGATTGTTGCTTGTGTTTGATATGTATATACATGCTGCAGTTAATTGACTTGAAAAT GGAGATGGAGAGCATGAAAGAGGAAAACAAAGTCCTGAGAAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGC AAATGAAATTTTCAATCATCCAGGAAAATAATAAAAGAAAGGTAAATCATATTGTTTGGAAGTCCTTTTAGATCGAATTG ATTCGGCAGGCAGAATGAATTTTAGGAAAAAACTATTGTGCATAGCTTTCGTGTGTCAGAATTAATTCTGAGAAAAAGTA AACGGATCACATGTTATTCATTAACTATCATCCTATTAATTATACTAGACTTTCATATAATAATTCATAGATCTTATTAA TATAGGATCCTCAATTTTCTCTCTCACTTCAAGACAATGCAACCGCCACCAGCGAGGAAGGACCATCAAGGATTCTTGAG ATCTTTAGCAAAAATATTCAAAGATCTCCATCTCTACCAAACAATAGTGCTAATGACGATAGTATGGACGAGAATGAATT GGGTTTGTCACTGAGGTTGCAGACAAGCACAAGTCAAAAAGAAACGGAGGAAAATAAGGAAGAAAAAAGAGAGCAATTAG TGGCAAGTTTTGCATCACCACCAGTGCAGAATAATAAATTACAGCGGACACATGACTTGCCGGGTATTACAGCACATGCT GCTGCTGCTAACAGAAAGGCTAGGGTTTCAGTTAGAGCAAGATGTGAAGCCGCCACAGTGAGTTTCAAAATCTGTATATT ATTAATATATAATGTTGTGTTCATATTATGAATTGATTAATATGAAGAGGTGATTTGAAATTTTGTGATATATAGATGAA TGATGGATGTCAATGGAGAAAATATGGCCAGAAAATTGCTAAAGGAAATCCATGTCCACGAGCTTACTATCGTTGCACCG TAGCCCCAGGCTGCCCAGTCAGGAAGCAGGTAAGTCTCAACCATTTGTATGAACACTTCAGTTGCATCCACTTCTAATCC TTATAGAGTCACTTCTCTTATGTAAAGAAGTCTCTTCATAAATTTCAACATTGATAAATTCACATCCATATTCTCAACCA TTTCACTTTTCCACAATTTTCTTATTTATCTCTTTTTTTAATGGTATCAGATCACCTATCATATTTTTTTTGTCTCTCTC TTTCATTTATATCTCTCTATTGAGTGTACGTATATATTGAGTGTGAACATACCATTTTCCTTATATATGTTACGGTGATC TCTATCCCTAATTAGCTTTTGGCTAGACTTGCTTTACATCCCGTTCTTAAATCAAGTTATTTACAACCAAATTTTCTAAT TTTCTAATCATATCAATAATATTTTAAAAATCAACAACAAATTATTAACAAATTTATTTTGTTTTTAGAAAGAAAATCCA TTATTCGAGGTTTGAATGGAGAATTTGATGAAAAGGATATAAGGAACTTGATCTAAACATTTTCCTATATTCTCATGTTT AGGAGCTATACAAATTTTCTTTAATAATTCAATTTTCTCCTTTTAATAATTATATTTATAAATCTACATTTTTGTATGCA AATATTCATTAATTGTAATATAAATTTATTTCACTCTAGAATTAAAACATTTACAAAAAAATTAGCAATAACAACCCATT TGAATTTTTGGTTTTTCGTTTCTTTGTTTGTTTTTTTGACTCAATTATTATGCATTGTTGTTAATTAAATTTCATGTAAT AGGTACAAAGATGTATAGATGACATGTCCATACTAATTACAACATACGAAGGAACACACAACCATCCACTCCCTGTTGGT GCAACTGCCATGGCTTCTTCCGCAGCTTCCTTCATGTTGCTAGACTCAAGTAACCCCATTTCATATGGCACATCAAGTTT CACATCTCAAGCAACTCTTCCTAATTACAACACGTTCCACCCTTTAAACCCACCTTCCAACATTAGAAGCATAAACCCCA ATGATCCATCTCAAGGAATTGTTCTTGATCTCACCCACAACCTCTCTGAACCCATACGTTTCTCTTCTGGTAGCTCCTCC AAGATGACCACTGAGCCTCGTTTTTCTTGGATGCAAAACAACAAAAGCAGTGGTATTGCAATGAATAACTTTCACAACCC TAGAACACTATTGGATCATGATAGGATTTGGAAAGGAGAAGAAAGTAAGAAGCCATTTGATGACAATAATATGTCCACAA TTGCCTCAGATCCTAAATTTAGGAATGCTGTTGCAGCCGCCATAACTTCACTCATGAATAAAGAAAGCCACACTACTCAT CCCATAGGGGCTTCCTTTGGTCATAGGAGTGGCCAAAATGGTGGCTCAAGTAGCAACAACAATTGGGTCATTGATTCTCT CTCAAAAAATGGTAAGCCCACTTGAATTTCATCTTGAGAAGAAATTGATAATAGGAAAATTCTACGATACACCACTGTTA CACTGCTTATAACTTATTGAGTTTAATTCATAACTATATGTAATGAATATTGTAACTTCTCATAACTTGTAAACTTTCTC ATTACAAGTTTTAACATAAGTTAAAAATCTTATGACACGTAGTTACAAATCAAACTCTACAAGTTAGAAGCAGTGCACTA GTACATCAACAAAACCTTGATAATATGTCTATGTTAAGATAGACAAAAAAAAGTTAATGATGTACACCAAGGTGTTTAGA ACAAAAAGAGACTTGTCCGACATCTGAATATCTCATTTCTTCATATAAATAATCTTACAACTGCATGCGGTCTCTTATGT TTTACTTGTAATTTGGTTTTTATTACATTGTTGACTATTGTAAAGAAAAGTTTGTGTGATTGGTCGAATGACATACGAAT TTCAATTATTAAAGTATTGCAGATCCTTTGTTATTGTGTGCTCTAATCTTGTAACATACTCAGACTACTCAAGTTGACAT GCTTTTAACATTTTGCAAATAGACATTGATATGAATTTTCAACCAGATATGATATGATAGGTAGACGATTGTATATCGTG GACCAAGAAAATATCATTCGTACGTAATTGAAATAGTTAAACATGTATTTATATAGTTCAATATTAGCGACAAATCGACA ATGTAAGTGTTTAACCTTTTTTTAGTCATTGTAAGTAGCTTTTGAGGTGATAGATTTATAACTAGAGTAGTCAATGAACC ATTAACTTTATCAACTTCACCTTTGCTTGGCTAGCTAATTGGAGGAGTTAATAGTTTATCTTGGTTGTCATAGCCGACCA ATAGACGACGTTCACTGGGACATGAATCCTCTGGGCCGATGAGGATGATTATTTGTCTTGGGGTCATTTGGGTTGCCTAG AGTAGAAAAGAAGAGAAAAAAATTAATGAATGTGATATATGCATGATATGATAAGAAGAGAAAAAATGAGGTGTATGTAT AAATGGCCTATGTAATATTTGGTGTATAAATATGACAATGTTGTGGTGGGCTAAGTTAAAAATTGGTCTACCCATGAACC ATATTTTTACTTCAAACATTTAGTATGTGTTACCAAAATTAAAATACAAGGATATTACGTTAATAGGAATTCTTATTCTC ATATGAGTAGAACTTTGTCAATATTGAACCAAACTGTTGAGCCTGTCAAATTATTTTGTAAGAATAGTTAATTCCGATAT TTTTGCAAGCTCGTTTCTCTAAATTCTAAAATTAAATGTCGTCTAACCTTTGTTTGGTTTAAGGAATATGTATTTTTAGA ACTGGTGAGATTAGTAATTGAAATGGTGTTAAAGTAACACGCTGTTAAACATATCAAAAGCTTTAGGGCCCGTTTGGTAT GTTATATAGTATAATGCCTGATAGTATATTGTATTAAGGCTGATAGGATAAGGCTTGATAAAAATTTAATATTATACAAC GTTTGGTCATACACTGTATAACCTGGTGGTGACAATGGTGGTGTTGGTGGTGGTGGTAGTGGTATTGGAAGGTGATGATG GTGACGATGTGGTGGATGGTGGTGGCGACGACGGTGGCGGTAGTGGTGGTGGTAGCGGCGATCGTGGTAGTGGTGGAGGG TGGTGGCAACGACAGTAGGATAACGATGATAGTATCAACGATGATGACAGTGGTGGAGCACTGGAGCTTGATGGTGGTGG CAGCAACAGTGTTAGTGGTGGAGGGTGGCAGTAGTGGTGGCGACGGTGGTGGTGGTGGTAGTGGCGATAACAATGGCAGT GTCAATGATGGTGACAATGGTGGAGGTGGCAGCGACGATGGTGGTGGCGACGGCGGTGGCAATAGTGGTGGCGATGGTGG AGGGTGGCGGCGGCAGCAATGATGGTAGCGGTAGTGGTGGTGATAGTGGTGGTGGTTGCGGTTGATTAAATATATTCAAG TAGTTTATACATCACATTTTTATTCTGCCTTATCCATCATTTATAGGGTGGATTAAATCATTCATCATTTCAGTGTATAA GAGAAGATTGATGTATAAACTTATACAATATAATATGAACACCAAACAGTGGATAAGAGCATAATGTATTGTATAAGCTT ATACAATCATGGTTAATACGGGGTACCATACGAGCCCTTAAATCTTAACAGAAAAAATGGGAACAAAAACTAGCTTGCTT GTTTCTTCAACCCAATTTGACGCTTGACTGGGATACACATGAACTAAACTCTTGACTAACTTAAAAATAGAAATGTATTG TTTTTTTGGGATCAAGAGAGAAATGATCTTTTATCAAGTAATGCAGAGCATTCAAGAATTGGAGCCACTAATAGAGATAC ATGGCCTAACCAAAACAAGCCTATAGTTTTCATTGGGCTTAGTCTTGTAAGTATGTCTGATATCATATACTCGACTAAAT TTTAAATTTAAATGTTTAGTTTTATTTTTTAATCCATGTGTATTTAAAAAAATAGAAAAGCCACGTGGAATAAATGACTC AGCAAAAATTGAGTCATATAGGCTGGAAACACGAGTAGGAACTTATTCTGATTAATTTTTTTTTCAGGGATTCGGAATCG GAAAAAAAATTTCGGGGACTTATTTTCGTACGGTAGACAATTTCAAAGACCTCCAAAACATTTAAACCATAACAATATTT TCTTGGAATTTACTATCTTGCTCCACCCCTCCAAGAGATCTCATAATAAACAAAAAGACATATATATATATATATATTAA TATTTATTTAACTAAAAGTTGTAAGATATGAAGTTTGG
CDS sequence (LotjaGi4g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTGATCTCTCTTTGAAGATAGAAAGTGATGATGAGCAAAATGAAGAAGAGGAGAAGGTGGGTGAGTTAGTGAA AGAGGATGACATGGAAGAAATGGTACATGAAGTCCCCACAGCTGGTGAAGTTGAAGAAGATGATGCATCAGTTGTAGAAA TATCTTTGCAAGATAACACAAAAACAAGAGAGTTAATTGACTTGAAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAA GTCCTGAGAAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAATGAAATTTTCAATCATCCAGGAAAATAA TAAAAGAAAGGATCCTCAATTTTCTCTCTCACTTCAAGACAATGCAACCGCCACCAGCGAGGAAGGACCATCAAGGATTC TTGAGATCTTTAGCAAAAATATTCAAAGATCTCCATCTCTACCAAACAATAGTGCTAATGACGATAGTATGGACGAGAAT GAATTGGGTTTGTCACTGAGGTTGCAGACAAGCACAAGTCAAAAAGAAACGGAGGAAAATAAGGAAGAAAAAAGAGAGCA ATTAGTGGCAAGTTTTGCATCACCACCAGTGCAGAATAATAAATTACAGCGGACACATGACTTGCCGGGTATTACAGCAC ATGCTGCTGCTGCTAACAGAAAGGCTAGGGTTTCAGTTAGAGCAAGATGTGAAGCCGCCACAATGAATGATGGATGTCAA TGGAGAAAATATGGCCAGAAAATTGCTAAAGGAAATCCATGTCCACGAGCTTACTATCGTTGCACCGTAGCCCCAGGCTG CCCAGTCAGGAAGCAGGTACAAAGATGTATAGATGACATGTCCATACTAATTACAACATACGAAGGAACACACAACCATC CACTCCCTGTTGGTGCAACTGCCATGGCTTCTTCCGCAGCTTCCTTCATGTTGCTAGACTCAAGTAACCCCATTTCATAT GGCACATCAAGTTTCACATCTCAAGCAACTCTTCCTAATTACAACACGTTCCACCCTTTAAACCCACCTTCCAACATTAG AAGCATAAACCCCAATGATCCATCTCAAGGAATTGTTCTTGATCTCACCCACAACCTCTCTGAACCCATACGTTTCTCTT CTGGTAGCTCCTCCAAGATGACCACTGAGCCTCGTTTTTCTTGGATGCAAAACAACAAAAGCAGTGGTATTGCAATGAAT AACTTTCACAACCCTAGAACACTATTGGATCATGATAGGATTTGGAAAGGAGAAGAAAGTAAGAAGCCATTTGATGACAA TAATATGTCCACAATTGCCTCAGATCCTAAATTTAGGAATGCTGTTGCAGCCGCCATAACTTCACTCATGAATAAAGAAA GCCACACTACTCATCCCATAGGGGCTTCCTTTGGTCATAGGAGTGGCCAAAATGGTGGCTCAAGTAGCAACAACAATTGG GTCATTGATTCTCTCTCAAAAAATGGTAAGCCCACTTGA
Protein sequence (LotjaGi4g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDLSLKIESDDEQNEEEEKVGELVKEDDMEEMVHEVPTAGEVEEDDASVVEISLQDNTKTRELIDLKMEMESMKEENK VLRKVVEQTMKDYYDLQMKFSIIQENNKRKDPQFSLSLQDNATATSEEGPSRILEIFSKNIQRSPSLPNNSANDDSMDEN ELGLSLRLQTSTSQKETEENKEEKREQLVASFASPPVQNNKLQRTHDLPGITAHAAAANRKARVSVRARCEAATMNDGCQ WRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASSAASFMLLDSSNPISY GTSSFTSQATLPNYNTFHPLNPPSNIRSINPNDPSQGIVLDLTHNLSEPIRFSSGSSSKMTTEPRFSWMQNNKSSGIAMN NFHNPRTLLDHDRIWKGEESKKPFDDNNMSTIASDPKFRNAVAAAITSLMNKESHTTHPIGASFGHRSGQNGGSSSNNNW VIDSLSKNGKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 476 | 476 | 1.2E-160 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 476 | 476 | 1.2E-160 | – | |
| Coils | 65 | 92 | 28 | - | – | |
| MobiDBLite | 139 | 158 | 20 | - | – | |
| Gene3D | 219 | 297 | 79 | 1.1E-33 | ||
| SUPERFAMILY | 228 | 296 | 69 | 7.19E-28 | ||
| ProSiteProfiles | 230 | 296 | 67 | 29.207 | ||
| SMART | 235 | 295 | 61 | 2.7E-37 | ||
| Pfam | 236 | 294 | 59 | 8.7E-25 | ||
| MobiDBLite | 461 | 492 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0029000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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